Loading Pathway...
Error: Pathway image not found.
Hide
Pathway Description
Operon: Glycine Cleavage System Inactivation
Escherichia coli
Protein Pathway
The gcvTHP operon in E. coli contains three genes that encode proteins involved in the glycine cleavage system. This system consists of four proteins, three of which are encoded in this operon, the other being the lipoamide dehydrogenase Lpd protein encoded by the lpd gene. Activation of the system occurs when large concentration of glycine are found in the cell, forming carbon dioxide, ammonia, a reduced pyridine nucleotide that cam be reused, and 5,10-methylenetetrahydrofolate. The operon can be inactivated when the glycine cleavge system transcriptional activator (GcvA) binds to one of four binding sites upstream of the promoter. If glycine levels in the cell are low, GcvA binds successfully, preventing transcription of the operon. However, if there is a high concentration of glycine in the cell, the cleavage system will need to be activated, and glycine can bind to GcvA, preventing its binding upstream of the promoter, and allowing transcription of the operon. The operon can also be inhibited by the transcriptional repressor PurR. Hypoxanthine can bind to PurR, activating it and allowing it to bind to the promoter region of the operon, blocking RNA polymerase and preventing the transcription of the operon.
The first gene in the operon, gcvT, encodes an aminomethyltransferase also known as the glycine cleavage system T-protein. This protein transfers the amino group from the intermediate produced by the H-protein, as well as the formation of 5,10-methylenetetrahydrofolate.
The second gene, gcvH, encodes the glycine cleavage system H-protein. This protein transfers the methylamine group of glycine between the P and T-proteins of the cleavage system.
The final gene in the operon, gcvP, encodes a decarboxylating glycine dehydrogenase, also known as the glycine cleavage system P-protein. This protein binds to and cleaves the amino group of glycine, transferring it to the complex with the H-protein and releasing carbon dioxide.
References
Operon: Glycine Cleavage System Inactivation References
Wonderling LD, Stauffer GV: The cyclic AMP receptor protein is dependent on GcvA for regulation of the gcv operon. J Bacteriol. 1999 Mar;181(6):1912-9.
Pubmed: 10074087
Wilson RL, Urbanowski ML, Stauffer GV: DNA binding sites of the LysR-type regulator GcvA in the gcv and gcvA control regions of Escherichia coli. J Bacteriol. 1995 Sep;177(17):4940-6.
Pubmed: 7665470
Jourdan AD, Stauffer GV: Genetic analysis of the GcvA binding site in the gcvA control region. Microbiology. 1999 Aug;145 ( Pt 8):2153-62. doi: 10.1099/13500872-145-8-2153.
Pubmed: 10463182
Stauffer LT, Fogarty SJ, Stauffer GV: Characterization of the Escherichia coli gcv operon. Gene. 1994 May 3;142(1):17-22.
Pubmed: 8181752
Stauffer LT, Stauffer GV: Role for the leucine-responsive regulatory protein (Lrp) as a structural protein in regulating the Escherichia coli gcvTHP operon. Microbiology. 1999 Mar;145 ( Pt 3):569-76. doi: 10.1099/13500872-145-3-569.
Pubmed: 10217490
McArthur SD, Pulvermacher SC, Stauffer GV: The Yersinia pestis gcvB gene encodes two small regulatory RNA molecules. BMC Microbiol. 2006 Jun 12;6:52. doi: 10.1186/1471-2180-6-52.
Pubmed: 16768793
Cho BK, Federowicz SA, Embree M, Park YS, Kim D, Palsson BO: The PurR regulon in Escherichia coli K-12 MG1655. Nucleic Acids Res. 2011 Aug;39(15):6456-64. doi: 10.1093/nar/gkr307. Epub 2011 May 13.
Pubmed: 21572102
Highlighted elements will appear in red.
Highlight Compounds
Highlight Proteins
Enter relative concentration values (without units). Elements will be highlighted in a color gradient where red = lowest concentration and green = highest concentration. For the best results, view the pathway in Black and White.
Visualize Compound Data
Visualize Protein Data
Settings