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Pathway Description
Operon: Xylose Transport
Escherichia coli
Category:
Protein Pathway
Sub-Categories:
Transport/Degradation
Gene Regulatory
Cellular Response
Created: 2015-11-04
Last Updated: 2019-12-11
The xylFGHR operon in E. coli contains four genes involved in the transport of xylose into the cell, and the regulation of the operon. This operon is both positively and negatively regulated. It is negatively regulated by the DNA-binding protein Fis, which binds to the promoter region and represses transcription of the operon. The operon can also be activated by the cAMP-activated global transcriptional regulator CRP, which is itself activated by the binding of cAMP. cAMP generally has a higher cellular concentration when glucose is not being used as the primary energy source of the cell, and in such conditions, alternative sources of carbon such as xylose would be needed. When this complex binds to the promoter region, it activates transcription of the operon, leading to increased levels of xylose transport into the cell. The operon can also be activated by the xylose operon regulatory protein, which is activated by the binding of D-xylose. This also binds to and activates transcription of the operon.
The first gene in the operon, xylF, encodes a D-xylose-binding periplasmic protein, which exists in the periplasm of the cell and binds to D-xylose. It is a part of the xylose transport system, along with the proteins encoded by xylG and xylH that are responsible for moving xylose against the concentration gradient into the cell.
The second gene, xylG, encodes the xylose import ATP-binding protein XylG, which is responsible for providing the energy necessary for the transport of xylose across the membrane and concentration gradient.
The third gene, xylH, encodes the xylose transport system permease protein xylH, which is likely responsible for moving xylose molecules across the cell's inner membrane.
The final gene in the operon, xylR, encodes the xylose operon regulatory protein, which regulates this operon, as well as tye xylAB operon, which is involved with the breakdown of xylose.
References
Operon: Xylose Transport References
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Bradley MD, Beach MB, de Koning AP, Pratt TS, Osuna R: Effects of Fis on Escherichia coli gene expression during different growth stages. Microbiology. 2007 Sep;153(Pt 9):2922-40. doi: 10.1099/mic.0.2007/008565-0.
Pubmed: 17768236
Laikova ON, Mironov AA, Gelfand MS: Computational analysis of the transcriptional regulation of pentose utilization systems in the gamma subdivision of Proteobacteria. FEMS Microbiol Lett. 2001 Dec 18;205(2):315-22.
Pubmed: 11750821
Song S, Park C: Organization and regulation of the D-xylose operons in Escherichia coli K-12: XylR acts as a transcriptional activator. J Bacteriol. 1997 Nov;179(22):7025-32.
Pubmed: 9371449
Sumiya M, Davis EO, Packman LC, McDonald TP, Henderson PJ: Molecular genetics of a receptor protein for D-xylose, encoded by the gene xylF, in Escherichia coli. Receptors Channels. 1995;3(2):117-28.
Pubmed: 8581399
Xu J, Johnson RC: Identification of genes negatively regulated by Fis: Fis and RpoS comodulate growth-phase-dependent gene expression in Escherichia coli. J Bacteriol. 1995 Feb;177(4):938-47.
Pubmed: 7860604
Sofia HJ, Burland V, Daniels DL, Plunkett G 3rd, Blattner FR: Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Nucleic Acids Res. 1994 Jul 11;22(13):2576-86. doi: 10.1093/nar/22.13.2576.
Pubmed: 8041620
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
Hayashi K, Morooka N, Yamamoto Y, Fujita K, Isono K, Choi S, Ohtsubo E, Baba T, Wanner BL, Mori H, Horiuchi T: Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol Syst Biol. 2006;2:2006.0007. doi: 10.1038/msb4100049. Epub 2006 Feb 21.
Pubmed: 16738553
Johnson RC, Ball CA, Pfeffer D, Simon MI: Isolation of the gene encoding the Hin recombinational enhancer binding protein. Proc Natl Acad Sci U S A. 1988 May;85(10):3484-8. doi: 10.1073/pnas.85.10.3484.
Pubmed: 2835774
Koch C, Vandekerckhove J, Kahmann R: Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene. Proc Natl Acad Sci U S A. 1988 Jun;85(12):4237-41. doi: 10.1073/pnas.85.12.4237.
Pubmed: 2837762
Ball CA, Osuna R, Ferguson KC, Johnson RC: Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol. 1992 Dec;174(24):8043-56. doi: 10.1128/jb.174.24.8043-8056.1992.
Pubmed: 1459953
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
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