Reference/ChEBI CHEBI 16015
type: UnificationXref
id: CHEBI:16015
db: ChEBI

Reference/ChemSpider 30572
type: UnificationXref
id: 30572
db: ChemSpider

Compound/PW C000479 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Ribulose 5-phosphate
stoichiometric coefficient: 1.0

Reference/CAS 7722-84-1
type: UnificationXref
id: 7722-84-1
db: CAS

Reference/PubChem-compound 6022
type: UnificationXref
id: 6022
db: PubChem-compound

Reference/KEGG Compound C00314
type: UnificationXref
id: C00314
db: KEGG Compound

Reference/TAXONOMY 3702
type: UnificationXref
id: 3702
db: TAXONOMY

Reference/ChemSpider 937
type: UnificationXref
id: 937
db: ChemSpider

Compound/PW C000500 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Glutamine
stoichiometric coefficient: 1.0

Pyridoxal 5'-phosphate
type: SmallMolecule
entity reference: Pyridoxal 5'-phosphate

Reference/ChEBI CHEBI 16134
type: UnificationXref
id: CHEBI:16134
db: ChEBI

Reference/HMDB HMDB0003125
type: UnificationXref
id: HMDB0003125
db: HMDB

Pyridoxal
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyridoxal

Reference/ChEBI CHEBI 27951
type: UnificationXref
id: CHEBI:27951
db: ChEBI

ChemicalStructure/PW C001420
type: ChemicalStructure
structure format: SMILES
structure data: O

ChemicalStructure/PW C001783
type: ChemicalStructure
structure format: SMILES
structure data: OO

Reference/ChEBI CHEBI 28803
type: UnificationXref
id: CHEBI:28803
db: ChEBI

Ammonia
type: SmallMoleculeReference
xref: Reference/BioCyc AMMONIA
xref: Reference/CAS 7664-41-7
xref: Reference/HMDB HMDB0000051
xref: Reference/PubChem-compound 222
xref: Reference/KEGG Compound C00014
xref: Reference/ChEBI CHEBI 16134
xref: Reference/ChemSpider 217
chemical formula: H3N
molecular weight: 17.026548
structure: ChemicalStructure/PW C000035

Compound/PW C002937 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: O-Phospho-4-hydroxy-L-threonine
stoichiometric coefficient: 1.0

Reference/ChemSpider 50
type: UnificationXref
id: 50
db: ChemSpider

Compound/PW C001065 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxygen
stoichiometric coefficient: 1.0

Reference/PubChem-compound 58838673
type: UnificationXref
id: 58838673
db: PubChem-compound

Reference/HMDB HMDB0000538
type: UnificationXref
id: HMDB0000538
db: HMDB

Reference/BioCyc ATP
type: UnificationXref
id: ATP
db: BioCyc

Reference/PubChem-compound 5961
type: UnificationXref
id: 5961
db: PubChem-compound

Compound/PW C000095 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Glutamic acid
stoichiometric coefficient: 1.0

Pyridoxine 5'-phosphate
type: SmallMolecule
entity reference: Pyridoxine 5'-phosphate

Phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Phosphate

Pyridoxine
type: SmallMolecule
entity reference: Pyridoxine
name: SubPathwayOutput

Reference/CAS 66-72-8
type: UnificationXref
id: 66-72-8
db: CAS

Water
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Water

Reference/PubChem-compound 51
type: UnificationXref
id: 51
db: PubChem-compound

Phosphoserine aminotransferase 1, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Phosphoserine aminotransferase 1, chloroplastic

Reference/BioCyc ADP
type: UnificationXref
id: ADP
db: BioCyc

Pyridoxamine
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyridoxamine

Compound/PW C001148/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxal 5'-phosphate
stoichiometric coefficient: 1.0

Pyridoxine
type: SmallMoleculeReference
xref: Reference/CAS 65-23-6
xref: Reference/ChemSpider 1025
xref: Reference/KEGG Compound C00314
xref: Reference/BioCyc CPD-455
xref: Reference/HMDB HMDB0000239
xref: Reference/ChEBI CHEBI 16709
xref: Reference/PubChem-compound 1054
chemical formula: C8H11NO3
molecular weight: 169.0739
structure: ChemicalStructure/PW C000161

Reference/ChemSpider 1026
type: UnificationXref
id: 1026
db: ChemSpider

Reference/ChemSpider 1025
type: UnificationXref
id: 1025
db: ChemSpider

Reference/ChemSpider 1024
type: UnificationXref
id: 1024
db: ChemSpider

Reference/ChemSpider 5746
type: UnificationXref
id: 5746
db: ChemSpider

Compound/PW C000095 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Glutamic acid
stoichiometric coefficient: 1.0

Compound/PW C001420 Cytoplasm/Stoichiometry/3.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 3.0

Inorganic pyrophosphatase 2
type: Protein
entity reference: Inorganic pyrophosphatase 2

Reference/ChemSpider 5742
type: UnificationXref
id: 5742
db: ChemSpider

Reference/PubChem-compound 439184
type: UnificationXref
id: 439184
db: PubChem-compound

Compound/PW C001017 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxine 5'-phosphate
stoichiometric coefficient: 1.0

Reference/ChemSpider 1023
type: UnificationXref
id: 1023
db: ChemSpider

Reference/ChemSpider 1022
type: UnificationXref
id: 1022
db: ChemSpider

Reference/ChemSpider 1021
type: UnificationXref
id: 1021
db: ChemSpider

Reference/ChemSpider 952
type: UnificationXref
id: 952
db: ChemSpider

Reference/BioCyc PYRIDOXAL PHOSPHATE
type: UnificationXref
id: PYRIDOXAL_PHOSPHATE
db: BioCyc

Reference/BioCyc ALPHA-GLUCOSE-16-BISPHOSPHATE
type: UnificationXref
id: ALPHA-GLUCOSE-16-BISPHOSPHATE
db: BioCyc

Reference/GENE ONTOLOGY GO 0009507
type: UnificationXref
id: GO:0009507
db: GENE ONTOLOGY

Compound/PW C001783 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen peroxide
stoichiometric coefficient: 1.0

Oxoglutaric acid
type: SmallMoleculeReference
xref: Reference/CAS 328-50-7
xref: Reference/PubChem-compound 51
xref: Reference/BioCyc 2-KETOGLUTARATE
xref: Reference/HMDB HMDB0000208
xref: Reference/ChEBI CHEBI 30915
xref: Reference/KEGG Compound C00026
xref: Reference/ChemSpider 50
chemical formula: C5H6O5
molecular weight: 146.02153
structure: ChemicalStructure/PW C000134

D-Glyceraldehyde 3-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: D-Glyceraldehyde 3-phosphate
name: SubPathwayOutput

Compound/PW C001148 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxal 5'-phosphate
stoichiometric coefficient: 1.0

Reference/ChemSpider 709
type: UnificationXref
id: 709
db: ChemSpider

Phosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00009
xref: Reference/PubChem-compound 1061
xref: Reference/CAS 14265-44-2
xref: Reference/HMDB HMDB0001429
xref: Reference/BioCyc CPD-8587
xref: Reference/ChEBI CHEBI 18367
xref: Reference/ChemSpider 1032
chemical formula: O4P
molecular weight: 94.95342
structure: ChemicalStructure/PW C001104

Reference/ChEBI CHEBI 16240
type: UnificationXref
id: CHEBI:16240
db: ChEBI

Pyridoxamine
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001431
xref: Reference/ChEBI CHEBI 16410
xref: Reference/KEGG Compound C00534
xref: Reference/PubChem-compound 1052
xref: Reference/CAS 85-87-0
xref: Reference/ChemSpider 1023
xref: Reference/BioCyc PYRIDOXAMINE
chemical formula: C8H12N2O2
molecular weight: 168.08987
structure: ChemicalStructure/PW C001106

Compound/PW C000035 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Ammonia
stoichiometric coefficient: 1.0

D-Ribulose 5-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: D-Ribulose 5-phosphate
name: SubPathwayOutput

Oxygen
type: SmallMolecule
cellular location: Chloroplast
entity reference: Oxygen

Reference/CAS 529-96-4
type: UnificationXref
id: 529-96-4
db: CAS

Pyridoxamine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Pyridoxamine

Reference/ChEBI CHEBI 28330
type: UnificationXref
id: CHEBI:28330
db: ChEBI

D-Glyceraldehyde 3-phosphate
type: SmallMoleculeReference
xref: Reference/BioCyc GAP
xref: Reference/ChEBI CHEBI 17138
xref: Reference/HMDB HMDB0001112
xref: Reference/ChemSpider 709
xref: Reference/KEGG Compound C00661
xref: Reference/PubChem-compound 729
xref: Reference/CAS 591-59-3
chemical formula: C3H7O6P
molecular weight: 169.99803
structure: ChemicalStructure/PW C000869

Reference/BioCyc CPD-455
type: UnificationXref
id: CPD-455
db: BioCyc

L-Glutamine
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000641
xref: Reference/ChEBI CHEBI 18050
xref: Reference/ChemSpider 5746
xref: Reference/BioCyc GLN
xref: Reference/KEGG Compound C00064
xref: Reference/PubChem-compound 5961
xref: Reference/CAS 56-85-9
chemical formula: C5H10N2O3
molecular weight: 146.06914
structure: ChemicalStructure/PW C000500

Pyridoxal 5'-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Pyridoxal 5'-phosphate

Reference/HMDB HMDB0000208
type: UnificationXref
id: HMDB0000208
db: HMDB

Reference/PubChem-compound 21145142
type: UnificationXref
id: 21145142
db: PubChem-compound

L-Glutamic acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: L-Glutamic acid

Reference/BioCyc CPD-6641
type: UnificationXref
id: CPD-6641
db: BioCyc

Reference/ChemSpider 217
type: UnificationXref
id: 217
db: ChemSpider

Reference/BioCyc PYRIDOXAMINE-5P
type: UnificationXref
id: PYRIDOXAMINE-5P
db: BioCyc

Pyridoxal
type: SmallMolecule
entity reference: Pyridoxal

Compound/PW C001188 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxal
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001104
type: ChemicalStructure
structure format: SMILES
structure data: [O-]P([O-])([O-])=O

Reference/HMDB HMDB0001545
type: UnificationXref
id: HMDB0001545
db: HMDB

ChemicalStructure/PW C000134
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(=O)C(O)=O

Reference/ChEBI CHEBI 30915
type: UnificationXref
id: CHEBI:30915
db: ChEBI

Reference/KEGG Compound C00009
type: UnificationXref
id: C00009
db: KEGG Compound

Reference/KEGG Compound C00008
type: UnificationXref
id: C00008
db: KEGG Compound

Reference/KEGG Compound C00007
type: UnificationXref
id: C00007
db: KEGG Compound

Hydrogen peroxide
type: SmallMolecule
cellular location: Chloroplast
entity reference: Hydrogen peroxide

ReactionCatalysis98529
type: Catalysis
controller: Pyridoxal 5'-phosphate synthase subunit PDX1.1
controlled: 4.3.3.6
control type: ACTIVATION

Compound/PW C002936 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Oxo-3-hydroxy-4-phosphobutanoic acid
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0001429
type: UnificationXref
id: HMDB0001429
db: HMDB

Reference/KEGG Compound C00001
type: UnificationXref
id: C00001
db: KEGG Compound

Reference/UniProt Q8W1X2
type: UnificationXref
id: Q8W1X2
db: UniProt

ChemicalStructure/PW C001106
type: ChemicalStructure
structure format: SMILES
structure data: CC1=C(O)C(CN)=C(CO)C=N1

Pyridoxine 5'-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Pyridoxine 5'-phosphate

Reference/ChEBI CHEBI 18367
type: UnificationXref
id: CHEBI:18367
db: ChEBI

Reference/ChemSpider 1032
type: UnificationXref
id: 1032
db: ChemSpider

2-Oxo-3-hydroxy-4-phosphobutanoic acid
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 27951
xref: Reference/KEGG Compound C06054
xref: Reference/HMDB HMDB0006801
xref: Reference/PubChem-compound 21145142
chemical formula: C4H7O8P
molecular weight: 213.98785
structure: ChemicalStructure/PW C002936

Reference/KEGG Compound C00002
type: UnificationXref
id: C00002
db: KEGG Compound

O-Phospho-4-hydroxy-L-threonine
type: SmallMoleculeReference
xref: Reference/KEGG Compound C06055
xref: Reference/ChEBI CHEBI 18336
xref: Reference/ChemSpider 389731
xref: Reference/HMDB HMDB0006802
xref: Reference/PubChem-compound 440901
chemical formula: C4H10NO7P
molecular weight: 215.01949
structure: ChemicalStructure/PW C002937

ReactionCatalysis98530
type: Catalysis
controller: Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic
controlled: 1.4.3.5
control type: ACTIVATION

Reference/HMDB HMDB0001431
type: UnificationXref
id: HMDB0001431
db: HMDB

ReactionCatalysis98531
type: Catalysis
controller: Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic
controlled: Reaction108420
control type: ACTIVATION

Reference/HMDB HMDB0001555
type: UnificationXref
id: HMDB0001555
db: HMDB

Reference/KEGG Compound C00250
type: UnificationXref
id: C00250
db: KEGG Compound

Reference/BioCyc GLN
type: UnificationXref
id: GLN
db: BioCyc

Reference/BioCyc GLT
type: UnificationXref
id: GLT
db: BioCyc

Reference/CAS 7664-41-7
type: UnificationXref
id: 7664-41-7
db: CAS

Compound/PW C001188/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxal
stoichiometric coefficient: 1.0

Hydrogen
type: SmallMoleculeReference
xref: Reference/PubChem-compound 58838673
xref: Reference/CAS 1333-74-0
xref: Reference/ChemSpider 762
xref: Reference/BioCyc ALPHA-GLUCOSE-16-BISPHOSPHATE
xref: Reference/KEGG Compound C00282
xref: Reference/HMDB HMDB0001362
xref: Reference/ChEBI CHEBI 18276
chemical formula: H2
molecular weight: 2.01565
structure: ChemicalStructure/PW C001051

Reference/KEGG Compound C00018
type: UnificationXref
id: C00018
db: KEGG Compound

Reference/ChEBI CHEBI 18335
type: UnificationXref
id: CHEBI:18335
db: ChEBI

Reference/ChEBI CHEBI 18336
type: UnificationXref
id: CHEBI:18336
db: ChEBI

Adenosine triphosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Adenosine triphosphate

ReactionCatalysis98538
type: Catalysis
controller: Inorganic pyrophosphatase 2
controlled: Reaction108427
control type: ACTIVATION

Reference/HMDB HMDB0001319
type: UnificationXref
id: HMDB0001319
db: HMDB

Pyridoxine 5'-phosphate
type: SmallMoleculeReference
xref: Reference/ChemSpider 1026
xref: Reference/KEGG Compound C00627
xref: Reference/ChEBI CHEBI 28803
xref: Reference/HMDB HMDB0001319
xref: Reference/BioCyc PYRIDOXINE-5P
xref: Reference/PubChem-compound 1055
xref: Reference/CAS 447-05-2
chemical formula: C8H12NO6P
molecular weight: 249.04022
structure: ChemicalStructure/PW C001017

ReactionCatalysis98539
type: Catalysis
controller: Inorganic pyrophosphatase 2
controlled: Reaction108428
control type: ACTIVATION

ReactionCatalysis98536
type: Catalysis
controller: Pyridoxal kinase
controlled: Reaction108425
control type: ACTIVATION

ReactionCatalysis98537
type: Catalysis
controller: Pyridoxal kinase
controlled: Reaction108426
control type: ACTIVATION

ReactionCatalysis98534
type: Catalysis
controller: Inorganic pyrophosphatase 2
controlled: 3.1.3.74
control type: ACTIVATION

Reference/PubChem-compound 222
type: UnificationXref
id: 222
db: PubChem-compound

ReactionCatalysis98535
type: Catalysis
controller: Pyridoxal kinase
controlled: 2.7.1.35
control type: ACTIVATION

Reference/ChEBI CHEBI 17363
type: UnificationXref
id: CHEBI:17363
db: ChEBI

Reference/KEGG Compound C00014
type: UnificationXref
id: C00014
db: KEGG Compound

ReactionCatalysis98532
type: Catalysis
controller: Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic
controlled: Reaction108421
control type: ACTIVATION

ReactionCatalysis98533
type: Catalysis
controller: Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic
controlled: 1.4.3.5
control type: ACTIVATION

Compound/PW C001051 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen
stoichiometric coefficient: 1.0

ReactionCatalysis98541
type: Catalysis
controller: Phosphoserine aminotransferase 1, chloroplastic
controlled: 2.6.1.52
control type: ACTIVATION

ReactionCatalysis98540
type: Catalysis
controller: Threonine synthase 2
controlled: 4.2.3.1
control type: ACTIVATION

Compound/PW C041184 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: 4-Hydroxy-L-threonine
stoichiometric coefficient: 1.0

Compound/PW C001148 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxal 5'-phosphate
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0000239
type: UnificationXref
id: HMDB0000239
db: HMDB

Reference/PubChem-compound 5957
type: UnificationXref
id: 5957
db: PubChem-compound

Reference/UniProt O80448
type: UnificationXref
id: O80448
db: UniProt

Reference/ChEBI CHEBI 16709
type: UnificationXref
id: CHEBI:16709
db: ChEBI

Compound/PW C000134 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxoglutaric acid
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 17138
type: UnificationXref
id: CHEBI:17138
db: ChEBI

Vitamin B6 Metabolism
type: Pathway
pathway order: PathwayEnzymeReaction/1187152
pathway order: PathwayEnzymeReaction/1187153
pathway order: PathwayEnzymeReaction/1187143
pathway order: PathwayEnzymeReaction/1187154
pathway order: PathwayEnzymeReaction/1187144
pathway order: PathwayEnzymeReaction/1187155
pathway order: PathwayEnzymeReaction/1187145
pathway order: PathwayEnzymeReaction/1187146
pathway order: PathwayEnzymeReaction/1187147
pathway order: PathwayEnzymeReaction/1187137
pathway order: PathwayEnzymeReaction/1187138
pathway order: PathwayEnzymeReaction/1187149
pathway order: PathwaySubPathway/57044
pathway order: PathwaySubPathway/57043
pathway order: PathwaySubPathway/57046
pathway order: PathwayEnzymeReaction/1187150
pathway order: PathwaySubPathway/57045
pathway component: Reaction108428
pathway component: 4.2.3.1
pathway component: ReactionCatalysis98538
pathway component: Reaction108420
pathway component: Reaction108421
pathway component: ReactionCatalysis98539
pathway component: 1.4.3.5
pathway component: ReactionCatalysis98536
pathway component: 3.1.3.74
pathway component: ReactionCatalysis98537
pathway component: ReactionCatalysis98534
pathway component: 2.7.1.35
pathway component: ReactionCatalysis98535
pathway component: Reaction108425
pathway component: ReactionCatalysis98532
pathway component: Reaction108426
pathway component: Reaction108427
pathway component: ReactionCatalysis98533
pathway component: ReactionCatalysis98541
pathway component: ReactionCatalysis98540
pathway component: 2.6.1.52
pathway component: 4.3.3.6
pathway component: Glyoxylate and dicarboxylate metabolism
pathway component: ReactionCatalysis98529
pathway component: Glycolysis
pathway component: Pentose phosphate pathway
pathway component: ReactionCatalysis98530
pathway component: ReactionCatalysis98531
xref: Reference/SMPDB SMP0063472
xref: Reference/PathWhiz PW064434
organism: Arabidopsis thaliana

Pyridoxal 5'-phosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00018
xref: Reference/PubChem-compound 1051
xref: Reference/BioCyc PYRIDOXAL PHOSPHATE
xref: Reference/CAS 54-47-7
xref: Reference/ChEBI CHEBI 18405
xref: Reference/HMDB HMDB0001491
xref: Reference/ChemSpider 1022
chemical formula: C8H10NO6P
molecular weight: 247.02457
structure: ChemicalStructure/PW C001148

ChemicalStructure/PW C000479
type: ChemicalStructure
structure format: SMILES
structure data: OCC(=O)[C@H](O)[C@H](O)COP(O)(O)=O

Reference/CAS 56-65-5
type: UnificationXref
id: 56-65-5
db: CAS

Reference/KEGG Compound C00027
type: UnificationXref
id: C00027
db: KEGG Compound

Reference/KEGG Compound C00026
type: UnificationXref
id: C00026
db: KEGG Compound

Reference/KEGG Compound C00025
type: UnificationXref
id: C00025
db: KEGG Compound

Reference/BioCyc PYRIDOXAL
type: UnificationXref
id: PYRIDOXAL
db: BioCyc

Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic

Compound/PW C000869 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Glyceraldehyde 3-phosphate
stoichiometric coefficient: 1.0

Reference/CAS 54-47-7
type: UnificationXref
id: 54-47-7
db: CAS

Water
type: SmallMolecule
cellular location: Chloroplast
entity reference: Water

Adenosine diphosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00008
xref: Reference/PubChem-compound 6022
xref: Reference/ChemSpider 5800
xref: Reference/CAS 58-64-0
xref: Reference/BioCyc ADP
xref: Reference/ChEBI CHEBI 16761
xref: Reference/HMDB HMDB0001341
chemical formula: C10H15N5O10P2
molecular weight: 427.02942
structure: ChemicalStructure/PW C001034

Reference/GENE ONTOLOGY GO 0005737
type: UnificationXref
id: GO:0005737
db: GENE ONTOLOGY

Reference/CAS 4151-19-3
type: UnificationXref
id: 4151-19-3
db: CAS

Pyridoxal kinase
type: Protein
cellular location: Cytoplasm
entity reference: Pyridoxal kinase

Threonine synthase 2
type: Protein
cellular location: Chloroplast
entity reference: Threonine synthase 2

Reference/BioCyc PYRIDOXAMINE
type: UnificationXref
id: PYRIDOXAMINE
db: BioCyc

Reaction108428
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001017/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000161/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104/Stoichiometry/1.0
right: Water
right: Pyridoxine 5'-phosphate
spontaneous: false
left: Pyridoxine
left: Phosphate
name: Phosphate + Pyridoxine → Pyridoxine 5'-phosphate + Water
conversion direction: LEFT_TO_RIGHT

Reference/ChEBI CHEBI 16410
type: UnificationXref
id: CHEBI:16410
db: ChEBI

Pyridoxamine 5'-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Pyridoxamine 5'-phosphate

4.2.3.1
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C041184 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002937 Chloroplast/Stoichiometry/1.0
right: Phosphate
right: 4-Hydroxy-L-threonine
spontaneous: false
EC number: 4.2.3.1
left: Water
left: O-Phospho-4-hydroxy-L-threonine
name: O-Phospho-4-hydroxy-L-threonine + Water → 4-Hydroxy-L-threonine + Phosphate
conversion direction: LEFT_TO_RIGHT

SubPathwayInteraction57043
type: Interaction
name: SubPathway57043Reaction
name: SubPathwayReaction
participant: D-Glyceraldehyde 3-phosphate

SubPathwayInteraction57046
type: Interaction
name: SubPathwayReaction
name: SubPathway57046Reaction
participant: Pyridoxine

SubPathwayInteraction57044
type: Interaction
name: SubPathway57044Reaction
name: SubPathwayReaction
participant: D-Ribulose 5-phosphate

SubPathwayInteraction57045
type: Interaction
name: SubPathway57045Reaction
name: SubPathwayReaction
participant: 2-Oxo-3-hydroxy-4-phosphobutanoic acid

Reaction108420
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001065 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001148 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001017 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001783 Chloroplast/Stoichiometry/1.0
right: Hydrogen peroxide
right: Pyridoxal 5'-phosphate
spontaneous: false
left: Oxygen
left: Pyridoxine 5'-phosphate
name: Oxygen + Pyridoxine 5'-phosphate → Hydrogen peroxide + Pyridoxal 5'-phosphate
conversion direction: LEFT_TO_RIGHT

Reaction108421
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001065 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001051 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001188 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001106 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000035 Chloroplast/Stoichiometry/1.0
right: Pyridoxal
right: Ammonia
right: Hydrogen
spontaneous: false
left: Oxygen
left: Water
left: Pyridoxamine
name: Oxygen + Pyridoxamine + Water → Ammonia + Hydrogen + Pyridoxal
conversion direction: LEFT_TO_RIGHT

Reference/BioCyc CPD-8587
type: UnificationXref
id: CPD-8587
db: BioCyc

1.4.3.5
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001065 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001188 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001783 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000161 Chloroplast/Stoichiometry/1.0
right: Pyridoxal
right: Hydrogen peroxide
spontaneous: false
EC number: 1.4.3.5
left: Pyridoxine
left: Oxygen
name: Oxygen + Pyridoxine ↔ Hydrogen peroxide + Pyridoxal
conversion direction: REVERSIBLE

3.1.3.74
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001197/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001106/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104/Stoichiometry/1.0
right: Water
right: Pyridoxamine 5'-phosphate
spontaneous: false
EC number: 3.1.3.74
left: Phosphate
left: Pyridoxamine
name: Phosphate + Pyridoxamine → Pyridoxamine 5'-phosphate + Water
conversion direction: LEFT_TO_RIGHT

ChemicalStructure/PW C001017
type: ChemicalStructure
structure format: SMILES
structure data: CC1=NC=C(COP(O)(O)=O)C(CO)=C1O

2.7.1.35
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001106 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001197 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Cytoplasm/Stoichiometry/1.0
right: Pyridoxamine 5'-phosphate
right: Adenosine diphosphate
spontaneous: false
EC number: 2.7.1.35
left: Adenosine triphosphate
left: Pyridoxamine
name: Adenosine triphosphate + Pyridoxamine → Adenosine diphosphate + Pyridoxamine 5'-phosphate
conversion direction: LEFT_TO_RIGHT

Reaction108425
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000161 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001017 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Cytoplasm/Stoichiometry/1.0
right: Pyridoxine 5'-phosphate
right: Adenosine diphosphate
spontaneous: false
left: Pyridoxine
left: Adenosine triphosphate
name: Adenosine triphosphate + Pyridoxine → Adenosine diphosphate + Pyridoxine 5'-phosphate
conversion direction: LEFT_TO_RIGHT

Reference/ChEBI CHEBI 18276
type: UnificationXref
id: CHEBI:18276
db: ChEBI

Reaction108426
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001148 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001188 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Cytoplasm/Stoichiometry/1.0
right: Pyridoxal 5'-phosphate
right: Adenosine diphosphate
spontaneous: false
left: Pyridoxal
left: Adenosine triphosphate
name: Adenosine triphosphate + Pyridoxal → Adenosine diphosphate + Pyridoxal 5'-phosphate
conversion direction: LEFT_TO_RIGHT

L-Glutamic acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: L-Glutamic acid

Reaction108427
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001188/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001148/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104/Stoichiometry/1.0
right: Pyridoxal
right: Phosphate
spontaneous: false
left: Water
left: Pyridoxal 5'-phosphate
name: Pyridoxal 5'-phosphate + Water → Phosphate + Pyridoxal
conversion direction: LEFT_TO_RIGHT

Reference/CAS 328-50-7
type: UnificationXref
id: 328-50-7
db: CAS

Water
type: SmallMolecule
entity reference: Water

ChemicalStructure/PW C001148
type: ChemicalStructure
structure format: SMILES
structure data: CC1=NC=C(COP(O)(O)=O)C(C=O)=C1O

Pyridoxine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Pyridoxine

Reference/KEGG Compound C00282
type: UnificationXref
id: C00282
db: KEGG Compound

Reference/BioCyc HYDROGEN-PEROXIDE
type: UnificationXref
id: HYDROGEN-PEROXIDE
db: BioCyc

Compound/PW C001104 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphate
stoichiometric coefficient: 1.0

2.6.1.52
type: BiochemicalReaction
participant stoichiometry: Compound/PW C002936 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002937 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000095 Chloroplast/Stoichiometry/1.0
right: 2-Oxo-3-hydroxy-4-phosphobutanoic acid
right: L-Glutamic acid
spontaneous: false
EC number: 2.6.1.52
left: O-Phospho-4-hydroxy-L-threonine
left: Oxoglutaric acid
name: O-Phospho-4-hydroxy-L-threonine + Oxoglutaric acid → 2-Oxo-3-hydroxy-4-phosphobutanoic acid + L-Glutamic acid
conversion direction: LEFT_TO_RIGHT

Phosphoserine aminotransferase 1, chloroplastic
type: ProteinReference
xref: Reference/UniProt Q96255
organism: Arabidopsis thaliana

Reference/HMDB HMDB0001341
type: UnificationXref
id: HMDB0001341
db: HMDB

Glyoxylate and dicarboxylate metabolism
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway57046
pathway component: SubPathwayInteraction57046
name: SubPathway

Reference/ChemSpider 389731
type: UnificationXref
id: 389731
db: ChemSpider

Compound/PW C001197 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxamine 5'-phosphate
stoichiometric coefficient: 1.0

L-Glutamine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: L-Glutamine

Glycolysis
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway57043
pathway component: SubPathwayInteraction57043
name: SubPathway

Pentose phosphate pathway
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway57045
pathway component: SubPathwayInteraction57045
name: SubPathway

Reference/CAS 56-85-9
type: UnificationXref
id: 56-85-9
db: CAS

Pentose phosphate pathway
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway57044
pathway component: SubPathwayInteraction57044
name: SubPathway

Compound/PW C001420 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001034
type: ChemicalStructure
structure format: SMILES

Reference/HMDB HMDB0001112
type: UnificationXref
id: HMDB0001112
db: HMDB

Reference/CAS 65-23-6
type: UnificationXref
id: 65-23-6
db: CAS

Reference/ChemSpider 763
type: UnificationXref
id: 763
db: ChemSpider

Pyridoxal
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Pyridoxal

Reference/ChemSpider 762
type: UnificationXref
id: 762
db: ChemSpider

Reference/HMDB HMDB0000148
type: UnificationXref
id: HMDB0000148
db: HMDB

Pyridoxal 5'-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyridoxal 5'-phosphate

Reference/HMDB HMDB0006801
type: UnificationXref
id: HMDB0006801
db: HMDB

Reference/HMDB HMDB0006802
type: UnificationXref
id: HMDB0006802
db: HMDB

Cytoplasm
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005737

Oxoglutaric acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: Oxoglutaric acid

Reference/PubChem-compound 193577
type: UnificationXref
id: 193577
db: PubChem-compound

Reference/PubChem-compound 784
type: UnificationXref
id: 784
db: PubChem-compound

Reference/ChEBI CHEBI 15422
type: UnificationXref
id: CHEBI:15422
db: ChEBI

Reference/CAS 85-87-0
type: UnificationXref
id: 85-87-0
db: CAS

Arabidopsis thaliana
type: BioSource
xref: Reference/TAXONOMY 3702

Reference/CAS 7732-18-5
type: UnificationXref
id: 7732-18-5
db: CAS

Reference/CAS 591-59-3
type: UnificationXref
id: 591-59-3
db: CAS

Oxygen
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001377
xref: Reference/ChemSpider 952
xref: Reference/KEGG Compound C00007
xref: Reference/ChEBI CHEBI 15379
xref: Reference/PubChem-compound 977
xref: Reference/BioCyc CPD-6641
xref: Reference/CAS 7782-44-7
chemical formula: O2
molecular weight: 31.98983
structure: ChemicalStructure/PW C001065

Pyridoxal
type: SmallMoleculeReference
xref: Reference/PubChem-compound 1050
xref: Reference/CAS 66-72-8
xref: Reference/KEGG Compound C00250
xref: Reference/HMDB HMDB0001545
xref: Reference/ChEBI CHEBI 17310
xref: Reference/ChemSpider 1021
xref: Reference/BioCyc PYRIDOXAL
chemical formula: C8H9NO3
molecular weight: 167.05824
structure: ChemicalStructure/PW C001188

Reference/BioCyc AMMONIA
type: UnificationXref
id: AMMONIA
db: BioCyc

ChemicalStructure/PW C000035
type: ChemicalStructure
structure format: SMILES
structure data: N

Reference/CAS 56-86-0
type: UnificationXref
id: 56-86-0
db: CAS

ChemicalStructure/PW C041184
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H]([C@H](O)CO)C(O)=O

Adenosine diphosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Adenosine diphosphate

Reference/HMDB HMDB0001362
type: UnificationXref
id: HMDB0001362
db: HMDB

L-Glutamic acid
type: SmallMoleculeReference
xref: Reference/PubChem-compound 33032
xref: Reference/ChEBI CHEBI 16015
xref: Reference/ChemSpider 30572
xref: Reference/HMDB HMDB0000148
xref: Reference/CAS 56-86-0
xref: Reference/BioCyc GLT
xref: Reference/KEGG Compound C00025
chemical formula: C5H9NO4
molecular weight: 147.05316
structure: ChemicalStructure/PW C000095

Reference/PubChem-compound 33032
type: UnificationXref
id: 33032
db: PubChem-compound

Inorganic pyrophosphatase 2
type: ProteinReference
xref: Reference/UniProt Q9FZ62
organism: Arabidopsis thaliana

Reference/SMPDB SMP0063472
type: UnificationXref
id: SMP0063472
db: SMPDB

4.3.3.6
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000479 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000869 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001148 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000095 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytoplasm/Stoichiometry/3.0
participant stoichiometry: Compound/PW C000500 Cytoplasm/Stoichiometry/1.0
right: Water
right: Pyridoxal 5'-phosphate
right: L-Glutamic acid
right: Phosphate
spontaneous: false
EC number: 4.3.3.6
left: D-Glyceraldehyde 3-phosphate
left: L-Glutamine
left: D-Ribulose 5-phosphate
name: D-Glyceraldehyde 3-phosphate + D-Ribulose 5-phosphate + L-Glutamine → L-Glutamic acid + Phosphate + Pyridoxal 5'-phosphate + 3 Water
conversion direction: LEFT_TO_RIGHT

1.4.3.5
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001065 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001148 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001197 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001783 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000035 Chloroplast/Stoichiometry/1.0
right: Ammonia
right: Hydrogen peroxide
right: Pyridoxal 5'-phosphate
spontaneous: false
EC number: 1.4.3.5
left: Oxygen
left: Water
left: Pyridoxamine 5'-phosphate
name: Oxygen + Pyridoxamine 5'-phosphate + Water → Ammonia + Hydrogen peroxide + Pyridoxal 5'-phosphate
conversion direction: LEFT_TO_RIGHT

Compound/PW C001106/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxamine
stoichiometric coefficient: 1.0

Pyridoxal kinase
type: ProteinReference
xref: Reference/UniProt Q8W1X2
organism: Arabidopsis thaliana

Adenosine triphosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15422
xref: Reference/PubChem-compound 5957
xref: Reference/HMDB HMDB0000538
xref: Reference/CAS 56-65-5
xref: Reference/ChemSpider 5742
xref: Reference/BioCyc ATP
xref: Reference/KEGG Compound C00002
chemical formula: C10H16N5O13P3
molecular weight: 506.99576
structure: ChemicalStructure/PW C000414

Threonine synthase 2
type: ProteinReference
xref: Reference/UniProt Q9SSP5
organism: Arabidopsis thaliana

Reference/KEGG Compound C00627
type: UnificationXref
id: C00627
db: KEGG Compound

Pyridoxal 5'-phosphate synthase subunit PDX1.1
type: ProteinReference
xref: Reference/UniProt O80448
organism: Arabidopsis thaliana

O-Phospho-4-hydroxy-L-threonine
type: SmallMolecule
cellular location: Chloroplast
entity reference: O-Phospho-4-hydroxy-L-threonine

Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic
type: ProteinReference
xref: Reference/UniProt Q9LTX3
organism: Arabidopsis thaliana

Reference/KEGG Compound C00064
type: UnificationXref
id: C00064
db: KEGG Compound

Reference/ChEBI CHEBI 16761
type: UnificationXref
id: CHEBI:16761
db: ChEBI

Reference/CAS 7782-44-7
type: UnificationXref
id: 7782-44-7
db: CAS

Reference/HMDB HMDB0001377
type: UnificationXref
id: HMDB0001377
db: HMDB

Reference/PathWhiz PW064434
type: UnificationXref
id: PW064434
db: PathWhiz

Pyridoxamine 5'-phosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00647
xref: Reference/BioCyc PYRIDOXAMINE-5P
xref: Reference/HMDB HMDB0001555
xref: Reference/ChEBI CHEBI 18335
xref: Reference/ChemSpider 1024
xref: Reference/CAS 529-96-4
xref: Reference/PubChem-compound 1053
chemical formula: C8H13N2O5P
molecular weight: 248.05621
structure: ChemicalStructure/PW C001197

Reference/KEGG Compound C06055
type: UnificationXref
id: C06055
db: KEGG Compound

Reference/KEGG Compound C06054
type: UnificationXref
id: C06054
db: KEGG Compound

2-Oxo-3-hydroxy-4-phosphobutanoic acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: 2-Oxo-3-hydroxy-4-phosphobutanoic acid
name: SubPathwayOutput

Pyridoxamine 5'-phosphate
type: SmallMolecule
entity reference: Pyridoxamine 5'-phosphate

Compound/PW C001106 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxamine
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0001491
type: UnificationXref
id: HMDB0001491
db: HMDB

ChemicalStructure/PW C000161
type: ChemicalStructure
structure format: SMILES
structure data: CC1=C(O)C(CO)=C(CO)C=N1

Reference/PubChem-compound 962
type: UnificationXref
id: 962
db: PubChem-compound

Reference/PubChem-compound 1050
type: UnificationXref
id: 1050
db: PubChem-compound

Reference/CAS 1333-74-0
type: UnificationXref
id: 1333-74-0
db: CAS

Reference/PubChem-compound 1051
type: UnificationXref
id: 1051
db: PubChem-compound

Ammonia
type: SmallMolecule
cellular location: Chloroplast
entity reference: Ammonia

Reference/PubChem-compound 1052
type: UnificationXref
id: 1052
db: PubChem-compound

Reference/BioCyc 2-KETOGLUTARATE
type: UnificationXref
id: 2-KETOGLUTARATE
db: BioCyc

Reference/BioCyc RIBULOSE-5P
type: UnificationXref
id: RIBULOSE-5P
db: BioCyc

Reference/ChemSpider 5800
type: UnificationXref
id: 5800
db: ChemSpider

Reference/KEGG Compound C00199
type: UnificationXref
id: C00199
db: KEGG Compound

Compound/PW C000161/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxine
stoichiometric coefficient: 1.0

Reference/PubChem-compound 440901
type: UnificationXref
id: 440901
db: PubChem-compound

Reference/PubChem-compound 1053
type: UnificationXref
id: 1053
db: PubChem-compound

Compound/PW C001034 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine diphosphate
stoichiometric coefficient: 1.0

Phosphate
type: SmallMolecule
entity reference: Phosphate

Reference/PubChem-compound 1054
type: UnificationXref
id: 1054
db: PubChem-compound

Reference/UniProt Q96255
type: UnificationXref
id: Q96255
db: UniProt

Compound/PW C001104/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphate
stoichiometric coefficient: 1.0

Reference/PubChem-compound 1055
type: UnificationXref
id: 1055
db: PubChem-compound

Pyridoxamine
type: SmallMolecule
entity reference: Pyridoxamine

ChemicalStructure/PW C001188
type: ChemicalStructure
structure format: SMILES
structure data: CC1=NC=C(CO)C(C=O)=C1O

ChemicalStructure/PW C001065
type: ChemicalStructure
structure format: SMILES
structure data: O=O

Reference/PubChem-compound 729
type: UnificationXref
id: 729
db: PubChem-compound

Reference/HMDB HMDB0000051
type: UnificationXref
id: HMDB0000051
db: HMDB

Pyridoxal 5'-phosphate synthase subunit PDX1.1
type: Protein
cellular location: Cytoplasm
entity reference: Pyridoxal 5'-phosphate synthase subunit PDX1.1

Compound/PW C000161 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxine
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0002111
type: UnificationXref
id: HMDB0002111
db: HMDB

ChemicalStructure/PW C000095
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CCC(O)=O)C(O)=O

4-Hydroxy-L-threonine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 193577
xref: Reference/ChEBI CHEBI 28330
chemical formula: C4H9NO4
molecular weight: 135.05316
structure: ChemicalStructure/PW C041184

Reference/ChEBI CHEBI 15377
type: UnificationXref
id: CHEBI:15377
db: ChEBI

Reference/KEGG Compound C00647
type: UnificationXref
id: C00647
db: KEGG Compound

Reference/UniProt Q9FZ62
type: UnificationXref
id: Q9FZ62
db: UniProt

Compound/PW C001197/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxamine 5'-phosphate
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 15379
type: UnificationXref
id: CHEBI:15379
db: ChEBI

Reference/CAS 14265-44-2
type: UnificationXref
id: 14265-44-2
db: CAS

Chloroplast
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0009507

D-Ribulose 5-phosphate
type: SmallMoleculeReference
xref: Reference/CAS 4151-19-3
xref: Reference/BioCyc RIBULOSE-5P
xref: Reference/KEGG Compound C00199
xref: Reference/PubChem-compound 439184
xref: Reference/HMDB HMDB0000618
xref: Reference/ChEBI CHEBI 17363
chemical formula: C5H11O8P
molecular weight: 230.01915
structure: ChemicalStructure/PW C000479

Reference/ChEBI CHEBI 18405
type: UnificationXref
id: CHEBI:18405
db: ChEBI

Compound/PW C001188 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxal
stoichiometric coefficient: 1.0

Reference/CAS 58-64-0
type: UnificationXref
id: 58-64-0
db: CAS

Compound/PW C001104 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphate
stoichiometric coefficient: 1.0

ChemicalStructure/PW C000414
type: ChemicalStructure
structure format: SMILES

Compound/PW C000161 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxine
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 17310
type: UnificationXref
id: CHEBI:17310
db: ChEBI

Reference/HMDB HMDB0000618
type: UnificationXref
id: HMDB0000618
db: HMDB

Phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Phosphate

Compound/PW C000414 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine triphosphate
stoichiometric coefficient: 1.0

Compound/PW C001106 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxamine
stoichiometric coefficient: 1.0

Compound/PW C001017/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxine 5'-phosphate
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001197
type: ChemicalStructure
structure format: SMILES
structure data: CC1=NC=C(COP(O)(O)=O)C(CN)=C1O

Compound/PW C001420/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

4-Hydroxy-L-threonine
type: SmallMolecule
cellular location: Chloroplast
entity reference: 4-Hydroxy-L-threonine

Reference/CAS 447-05-2
type: UnificationXref
id: 447-05-2
db: CAS

Reference/KEGG Compound C00534
type: UnificationXref
id: C00534
db: KEGG Compound

Compound/PW C001197 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxamine 5'-phosphate
stoichiometric coefficient: 1.0

ChemicalStructure/PW C000500
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CCC(N)=O)C(O)=O

ChemicalStructure/PW C000869
type: ChemicalStructure
structure format: SMILES
structure data: OC(COP(O)(O)=O)C=O

Reference/BioCyc PYRIDOXINE-5P
type: UnificationXref
id: PYRIDOXINE-5P
db: BioCyc

Pyridoxine
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyridoxine

Reference/ChEBI CHEBI 18050
type: UnificationXref
id: CHEBI:18050
db: ChEBI

Water
type: SmallMoleculeReference
xref: Reference/PubChem-compound 962
xref: Reference/ChEBI CHEBI 15377
xref: Reference/KEGG Compound C00001
xref: Reference/ChemSpider 937
xref: Reference/HMDB HMDB0002111
xref: Reference/CAS 7732-18-5
chemical formula: H2O
molecular weight: 18.010565
structure: ChemicalStructure/PW C001420

Pyridoxamine 5'-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyridoxamine 5'-phosphate

Hydrogen peroxide
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0003125
xref: Reference/PubChem-compound 784
xref: Reference/ChemSpider 763
xref: Reference/CAS 7722-84-1
xref: Reference/BioCyc HYDROGEN-PEROXIDE
xref: Reference/ChEBI CHEBI 16240
xref: Reference/KEGG Compound C00027
chemical formula: H2O2
molecular weight: 34.005478
structure: ChemicalStructure/PW C001783

Reference/UniProt Q9SSP5
type: UnificationXref
id: Q9SSP5
db: UniProt

Pyridoxine 5'-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyridoxine 5'-phosphate

Reference/BioCyc GAP
type: UnificationXref
id: GAP
db: BioCyc

Reference/PubChem-compound 1061
type: UnificationXref
id: 1061
db: PubChem-compound

Reference/PubChem-compound 977
type: UnificationXref
id: 977
db: PubChem-compound

Compound/PW C001017 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyridoxine 5'-phosphate
stoichiometric coefficient: 1.0

Reference/KEGG Compound C00661
type: UnificationXref
id: C00661
db: KEGG Compound

ChemicalStructure/PW C002936
type: ChemicalStructure
structure format: SMILES
structure data: O[C@H](COP(O)(O)=O)C(=O)C(O)=O

ChemicalStructure/PW C002937
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H]([C@H](O)COP(O)(O)=O)C(O)=O

Reference/UniProt Q9LTX3
type: UnificationXref
id: Q9LTX3
db: UniProt

Reference/HMDB HMDB0000641
type: UnificationXref
id: HMDB0000641
db: HMDB

Hydrogen
type: SmallMolecule
cellular location: Chloroplast
entity reference: Hydrogen

ChemicalStructure/PW C001051
type: ChemicalStructure
structure format: SMILES
structure data: [H][H]