Reference/ChEBI CHEBI 16015
type: UnificationXref
id: CHEBI:16015
db: ChEBI

Reference/ChemSpider 30572
type: UnificationXref
id: 30572
db: ChemSpider

Reference/ChemSpider 17215925
type: UnificationXref
id: 17215925
db: ChemSpider

Reference/CAS 7722-84-1
type: UnificationXref
id: 7722-84-1
db: CAS

ChemicalStructure/PW C096945
type: ChemicalStructure
structure format: SMILES
structure data: CN1[C@H]2CC[C@@H]1CC(=O)C2

Reference/PubChem-compound 6140
type: UnificationXref
id: 6140
db: PubChem-compound

Reference/TAXONOMY 3702
type: UnificationXref
id: 3702
db: TAXONOMY

Reference/ChemSpider 937
type: UnificationXref
id: 937
db: ChemSpider

Tyrosine aminotransferase
type: Protein
cellular location: Cytosol
entity reference: Tyrosine aminotransferase

ChemicalStructure/PW C096944
type: ChemicalStructure
structure format: SMILES
structure data: CN1[C@H]2CC[C@@H]1C[C@H](O)C2

Reference/ChEBI CHEBI 16134
type: UnificationXref
id: CHEBI:16134
db: ChEBI

Reference/CAS 63-91-2
type: UnificationXref
id: 63-91-2
db: CAS

Reference/UniProt Q9LVY1
type: UnificationXref
id: Q9LVY1
db: UniProt

Reference/HMDB HMDB0003125
type: UnificationXref
id: HMDB0003125
db: HMDB

Compound/PW C001065/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxygen
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001783
type: ChemicalStructure
structure format: SMILES
structure data: OO

ChemicalStructure/PW C001420
type: ChemicalStructure
structure format: SMILES
structure data: O

Ammonia
type: SmallMoleculeReference
xref: Reference/BioCyc AMMONIA
xref: Reference/CAS 7664-41-7
xref: Reference/HMDB HMDB0000051
xref: Reference/PubChem-compound 222
xref: Reference/KEGG Compound C00014
xref: Reference/ChEBI CHEBI 16134
xref: Reference/ChemSpider 217
chemical formula: H3N
molecular weight: 17.026548
structure: ChemicalStructure/PW C000035

Reference/ChemSpider 50
type: UnificationXref
id: 50
db: ChemSpider

Compound/PW C040034/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Compound/PW C012810 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
stoichiometric coefficient: 1.0

Reference/PubChem-compound 440932
type: UnificationXref
id: 440932
db: PubChem-compound

Compound/PW C000095 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Glutamic acid
stoichiometric coefficient: 1.0

2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
type: SmallMoleculeReference
xref: Reference/CAS 156-06-9
xref: Reference/HMDB HMDB0031629
xref: Reference/ChEBI CHEBI 30851
xref: Reference/ChemSpider 972
xref: Reference/PubChem-compound 997
xref: Reference/KEGG Compound C00166
chemical formula: C9H8O3
molecular weight: 164.04735
structure: ChemicalStructure/PW C012810

Reference/PubChem-compound 51
type: UnificationXref
id: 51
db: PubChem-compound

Reference/BioCyc TROPINONE
type: UnificationXref
id: TROPINONE
db: BioCyc

1-Methylpyrrolinium
type: SmallMolecule
entity reference: 1-Methylpyrrolinium

1-Methylpyrrolinium
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0060253
xref: Reference/KEGG Compound C06178
xref: Reference/ChEBI CHEBI 27435
xref: Reference/PubChem-compound 440932
chemical formula: C5H10N
molecular weight: 84.08132
structure: ChemicalStructure/PW C041153

Compound/PW C000035/Stoichiometry/1.0
type: Stoichiometry
physical entity: Ammonia
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0060253
type: UnificationXref
id: HMDB0060253
db: HMDB

Reference/CAS 53-59-8
type: UnificationXref
id: 53-59-8
db: CAS

Compound/PW C000095 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Glutamic acid
stoichiometric coefficient: 1.0

5-Aminopentanal
type: SmallMoleculeReference
xref: Reference/ChemSpider 391944
xref: Reference/PubChem-compound 443849
xref: Reference/HMDB HMDB0012815
xref: Reference/KEGG Compound C12455
chemical formula: C5H11NO
molecular weight: 101.08406
structure: ChemicalStructure/PW C008091

Reference/PubChem-compound 1038
type: UnificationXref
id: 1038
db: PubChem-compound

Reference/ChEBI CHEBI 16474
type: UnificationXref
id: CHEBI:16474
db: ChEBI

Reference/ChemSpider 952
type: UnificationXref
id: 952
db: ChemSpider

Tropinone reductase homolog At5g06060
type: Protein
entity reference: Tropinone reductase homolog At5g06060

Reference/GENE ONTOLOGY GO 0005829
type: UnificationXref
id: GO:0005829
db: GENE ONTOLOGY

Ammonia
type: SmallMolecule
entity reference: Ammonia

Reference/UniProt B9DHD3
type: UnificationXref
id: B9DHD3
db: UniProt

Reference/GENE ONTOLOGY GO 0009507
type: UnificationXref
id: GO:0009507
db: GENE ONTOLOGY

Oxoglutaric acid
type: SmallMoleculeReference
xref: Reference/CAS 328-50-7
xref: Reference/PubChem-compound 51
xref: Reference/BioCyc 2-KETOGLUTARATE
xref: Reference/HMDB HMDB0000208
xref: Reference/ChEBI CHEBI 30915
xref: Reference/KEGG Compound C00026
xref: Reference/ChemSpider 50
chemical formula: C5H6O5
molecular weight: 146.02153
structure: ChemicalStructure/PW C000134

Reference/KEGG Compound C01672
type: UnificationXref
id: C01672
db: KEGG Compound

Primary amine oxidase 1
type: Protein
entity reference: Primary amine oxidase 1

Reference/ChEBI CHEBI 16240
type: UnificationXref
id: CHEBI:16240
db: ChEBI

NADPH
type: SmallMolecule
entity reference: NADPH

Reference/ChemSpider 1010
type: UnificationXref
id: 1010
db: ChemSpider

Reference/CAS 462-94-2
type: UnificationXref
id: 462-94-2
db: CAS

NADP
type: SmallMolecule
entity reference: NADP

NADPH
type: SmallMoleculeReference
xref: Reference/CAS 53-57-6
xref: Reference/HMDB HMDB0000221
xref: Reference/PubChem-compound 22833512
xref: Reference/BioCyc NADPH
xref: Reference/ChemSpider 17215925
xref: Reference/KEGG Compound C00005
xref: Reference/ChEBI CHEBI 16474
chemical formula: C21H30N7O17P3
molecular weight: 745.0911
structure: ChemicalStructure/PW C000146

NADP
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00006
xref: Reference/CAS 53-59-8
xref: Reference/BioCyc NAD(P)
xref: Reference/HMDB HMDB0000217
xref: Reference/ChEBI CHEBI 18009
xref: Reference/PubChem-compound 5886
xref: Reference/ChemSpider 5675
chemical formula: C21H29N7O17P3
molecular weight: 744.08325
structure: ChemicalStructure/PW C000143

Reference/ChemSpider 13866593
type: UnificationXref
id: 13866593
db: ChemSpider

Compound/PW C000146/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADPH
stoichiometric coefficient: 1.0

Reference/BioCyc NADPH
type: UnificationXref
id: NADPH
db: BioCyc

Reference/ChEBI CHEBI 15884
type: UnificationXref
id: CHEBI:15884
db: ChEBI

Compound/PW C012810 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
stoichiometric coefficient: 1.0

ChemicalStructure/PW C008091
type: ChemicalStructure
structure format: SMILES
structure data: NCCCCC=O

Hydrogen Ion
type: SmallMolecule
entity reference: Hydrogen Ion

Reference/HMDB HMDB0000208
type: UnificationXref
id: HMDB0000208
db: HMDB

N-Methylputrescine
type: SmallMoleculeReference
xref: Reference/CAS 14475-60-6
xref: Reference/KEGG Compound C02723
xref: Reference/PubChem-compound 439791
xref: Reference/ChemSpider 388845
xref: Reference/BioCyc CPD-394
xref: Reference/HMDB HMDB0003661
xref: Reference/ChEBI CHEBI 17166
chemical formula: C5H14N2
molecular weight: 102.1157
structure: ChemicalStructure/PW C001951

L-Glutamic acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: L-Glutamic acid

Cytosol
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005829

Tropinone reductase homolog At5g06060
type: ProteinReference
xref: Reference/UniProt Q9LHT0
organism: Arabidopsis thaliana

Reference/BioCyc CPD-6641
type: UnificationXref
id: CPD-6641
db: BioCyc

Reference/ChemSpider 217
type: UnificationXref
id: 217
db: ChemSpider

Reference/HMDB HMDB0031629
type: UnificationXref
id: HMDB0031629
db: HMDB

Protein/13579/Stoichiometry/2.0
type: Stoichiometry
physical entity: Primary amine oxidase 1
stoichiometric coefficient: 2.0

Reference/HMDB HMDB0000217
type: UnificationXref
id: HMDB0000217
db: HMDB

ChemicalStructure/PW C000134
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(=O)C(O)=O

Oxygen
type: SmallMolecule
entity reference: Oxygen

Reference/ChEBI CHEBI 30915
type: UnificationXref
id: CHEBI:30915
db: ChEBI

Reference/KEGG Compound C12455
type: UnificationXref
id: C12455
db: KEGG Compound

Reference/KEGG Compound C00007
type: UnificationXref
id: C00007
db: KEGG Compound

Compound/PW C008091/Stoichiometry/1.0
type: Stoichiometry
physical entity: 5-Aminopentanal
stoichiometric coefficient: 1.0

Reference/KEGG Compound C00006
type: UnificationXref
id: C00006
db: KEGG Compound

Reference/ChEBI CHEBI 18127
type: UnificationXref
id: CHEBI:18127
db: ChEBI

Reference/ChEBI CHEBI 18009
type: UnificationXref
id: CHEBI:18009
db: ChEBI

Reference/KEGG Compound C00001
type: UnificationXref
id: C00001
db: KEGG Compound

Reference/KEGG Compound C00005
type: UnificationXref
id: C00005
db: KEGG Compound

ChemicalStructure/PW C000143
type: ChemicalStructure
structure format: SMILES

L-Phenylalanine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: L-Phenylalanine

Reference/HMDB HMDB0000221
type: UnificationXref
id: HMDB0000221
db: HMDB

ChemicalStructure/PW C000146
type: ChemicalStructure
structure format: SMILES

Histidinol-phosphate aminotransferase 1, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Histidinol-phosphate aminotransferase 1, chloroplastic

Reference/BioCyc GLT
type: UnificationXref
id: GLT
db: BioCyc

Reference/CAS 7664-41-7
type: UnificationXref
id: 7664-41-7
db: CAS

Tropinone
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 16656
xref: Reference/BioCyc TROPINONE
xref: Reference/PubChem-compound 79038
xref: Reference/ChemSpider 393722
xref: Reference/CAS 532-24-1
xref: Reference/KEGG Compound C00783
chemical formula: C8H13NO
molecular weight: 139.09972
structure: ChemicalStructure/PW C096945

Reference/CAS 53-57-6
type: UnificationXref
id: 53-57-6
db: CAS

Reference/ChemSpider 391944
type: UnificationXref
id: 391944
db: ChemSpider

Tropine
type: SmallMoleculeReference
xref: Reference/CAS 120-29-6
xref: Reference/BioCyc TROPINE
xref: Reference/ChEBI CHEBI 15884
xref: Reference/ChemSpider 10180559
xref: Reference/KEGG Compound C00729
xref: Reference/PubChem-compound 8424
chemical formula: C8H15NO
molecular weight: 141.11537
structure: ChemicalStructure/PW C096944

Oxoglutaric acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Oxoglutaric acid

Compound/PW C001783/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen peroxide
stoichiometric coefficient: 1.0

Compound/PW C000134 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxoglutaric acid
stoichiometric coefficient: 1.0

ChemicalStructure/PW C000104
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CC1=CC=CC=C1)C(O)=O

Reference/PubChem-compound 222
type: UnificationXref
id: 222
db: PubChem-compound

Reference/PubChem-compound 8424
type: UnificationXref
id: 8424
db: PubChem-compound

Reference/KEGG Compound C00014
type: UnificationXref
id: C00014
db: KEGG Compound

Reference/CAS 120-29-6
type: UnificationXref
id: 120-29-6
db: CAS

Reference/BioCyc NAD(P)
type: UnificationXref
id: NAD(P)
db: BioCyc

ChemicalStructure/PW C001565
type: ChemicalStructure
structure format: SMILES
structure data: NCCCCCN

Compound/PW C096944/Stoichiometry/1.0
type: Stoichiometry
physical entity: Tropine
stoichiometric coefficient: 1.0

Compound/PW C000134 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxoglutaric acid
stoichiometric coefficient: 1.0

Hydrogen Ion
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00080
xref: Reference/ChEBI CHEBI 15378
xref: Reference/HMDB HMDB0059597
xref: Reference/PubChem-compound 1038
xref: Reference/ChemSpider 1010
chemical formula: H
molecular weight: 1.007825
structure: ChemicalStructure/PW C040034

Tropane, Piperidine, and Pyridine Alkaloid Biosynthesis
type: Pathway
pathway order: PathwayEnzymeReaction/1188928
pathway order: PathwayEnzymeReaction/1187174
pathway order: PathwayEnzymeReaction/1188927
pathway order: PathwaySubPathway/57050
pathway order: PathwayEnzymeReaction/1188929
pathway order: PathwayEnzymeReaction/1188953
pathway order: PathwayEnzymeReaction/1188954
pathway order: PathwaySubPathway/57049
pathway component: Phenylalanine, tyrosine and tryptophan biosynthesis
pathway component: Reaction108431
pathway component: ReactionCatalysis98549
pathway component: Phenylalanine metabolism
pathway component: Reaction108432
pathway component: 1.1.1.206
pathway component: ReactionCatalysis98547
pathway component: ReactionCatalysis98548
pathway component: Reaction108434
pathway component: ReactionCatalysis98545
pathway component: ReactionCatalysis98543
pathway component: ReactionCatalysis98544
xref: Reference/PathWhiz PW064436
xref: Reference/SMPDB SMP0063474
organism: Arabidopsis thaliana

ReactionCatalysis98549
type: Catalysis
controller: Primary amine oxidase
controlled: Reaction108434
control type: ACTIVATION

ReactionCatalysis98547
type: Catalysis
controller: Primary amine oxidase
controlled: Reaction108432
control type: ACTIVATION

ReactionCatalysis98548
type: Catalysis
controller: Tropinone reductase homolog At5g06060
controlled: 1.1.1.206
control type: ACTIVATION

Compound/PW C000104 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Phenylalanine
stoichiometric coefficient: 1.0

L-Glutamic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: L-Glutamic acid

ReactionCatalysis98545
type: Catalysis
controller: Histidinol-phosphate aminotransferase 1, chloroplastic
controlled: Reaction108431
control type: ACTIVATION

Reference/KEGG Compound C00027
type: UnificationXref
id: C00027
db: KEGG Compound

Reference/KEGG Compound C00026
type: UnificationXref
id: C00026
db: KEGG Compound

N-Methylputrescine
type: SmallMolecule
entity reference: N-Methylputrescine

ReactionCatalysis98543
type: Catalysis
controller: Aspartate aminotransferase, cytoplasmic
controlled: Reaction108431
control type: ACTIVATION

Reference/KEGG Compound C00025
type: UnificationXref
id: C00025
db: KEGG Compound

ReactionCatalysis98544
type: Catalysis
controller: Tyrosine aminotransferase
controlled: Reaction108431
control type: ACTIVATION

Reference/GENE ONTOLOGY GO 0005737
type: UnificationXref
id: GO:0005737
db: GENE ONTOLOGY

Reference/BioCyc CADAVERINE
type: UnificationXref
id: CADAVERINE
db: BioCyc

Compound/PW C000143/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADP
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16656
type: UnificationXref
id: CHEBI:16656
db: ChEBI

Reference/UniProt O23349
type: UnificationXref
id: O23349
db: UniProt

Phenylalanine metabolism
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway57050
pathway component: SubPathwayInteraction57050
name: SubPathway

L-Glutamic acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: L-Glutamic acid

Reference/CAS 328-50-7
type: UnificationXref
id: 328-50-7
db: CAS

Hydrogen peroxide
type: SmallMolecule
entity reference: Hydrogen peroxide

Water
type: SmallMolecule
entity reference: Water

Reference/ChEBI CHEBI 27435
type: UnificationXref
id: CHEBI:27435
db: ChEBI

Reference/PubChem-compound 439791
type: UnificationXref
id: 439791
db: PubChem-compound

Reference/BioCyc HYDROGEN-PEROXIDE
type: UnificationXref
id: HYDROGEN-PEROXIDE
db: BioCyc

SubPathwayInteraction57049
type: Interaction
name: SubPathwayReaction
name: SubPathway57049Reaction
participant: L-Phenylalanine

2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
type: SmallMolecule
cellular location: Cytosol
entity reference: 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)

Phenylalanine, tyrosine and tryptophan biosynthesis
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway57049
pathway component: SubPathwayInteraction57049
name: SubPathway

Tropine
type: SmallMolecule
entity reference: Tropine

Reference/PubChem-compound 997
type: UnificationXref
id: 997
db: PubChem-compound

Tropinone
type: SmallMolecule
entity reference: Tropinone

Reaction108431
type: BiochemicalReaction
participant stoichiometry: Compound/PW C012810 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000104 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000104 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000095 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000095 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C012810 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000104 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000095 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C012810 Chloroplast/Stoichiometry/1.0
right: 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
right: L-Glutamic acid
spontaneous: false
left: L-Phenylalanine
left: Oxoglutaric acid
name: L-Phenylalanine + Oxoglutaric acid ↔ 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto) + L-Glutamic acid
conversion direction: REVERSIBLE

Reference/KEGG Compound C00166
type: UnificationXref
id: C00166
db: KEGG Compound

Reaction108432
type: BiochemicalReaction
participant stoichiometry: Compound/PW C041153/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001065/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001783/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001951/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000035/Stoichiometry/1.0
right: Hydrogen peroxide
right: Ammonia
right: 1-Methylpyrrolinium
spontaneous: false
left: Hydrogen Ion
left: Oxygen
left: N-Methylputrescine
name: Hydrogen Ion + N-Methylputrescine + Oxygen → 1-Methylpyrrolinium + Ammonia + Hydrogen peroxide
conversion direction: LEFT_TO_RIGHT

1.1.1.206
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000146/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000143/Stoichiometry/1.0
participant stoichiometry: Compound/PW C096944/Stoichiometry/1.0
participant stoichiometry: Compound/PW C096945/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034/Stoichiometry/1.0
right: Hydrogen Ion
right: Tropinone
right: NADPH
spontaneous: false
EC number: 1.1.1.206
left: Tropine
left: NADP
name: NADP + Tropine ← Hydrogen Ion + NADPH + Tropinone
conversion direction: RIGHT_TO_LEFT

Reference/ChemSpider 5675
type: UnificationXref
id: 5675
db: ChemSpider

Reaction108434
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420/Stoichiometry/1.0
participant stoichiometry: Compound/PW C008091/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001565/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001065/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001783/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000035/Stoichiometry/1.0
right: 5-Aminopentanal
right: Hydrogen peroxide
right: Ammonia
spontaneous: false
left: Water
left: Oxygen
left: Cadaverine
name: Cadaverine + Oxygen + Water → 5-Aminopentanal + Ammonia + Hydrogen peroxide
conversion direction: LEFT_TO_RIGHT

Aspartate aminotransferase, cytoplasmic
type: Complex
cellular location: Cytoplasm
component: Aspartate aminotransferase, cytoplasmic isozyme 2
component: Aspartate aminotransferase, cytoplasmic isozyme 1

Reference/UniProt P46646
type: UnificationXref
id: P46646
db: UniProt

Reference/ChemSpider 763
type: UnificationXref
id: 763
db: ChemSpider

Reference/HMDB HMDB0002322
type: UnificationXref
id: HMDB0002322
db: HMDB

ChemicalStructure/PW C001951
type: ChemicalStructure
structure format: SMILES
structure data: CNCCCCN

Reference/HMDB HMDB0000148
type: UnificationXref
id: HMDB0000148
db: HMDB

Compound/PW C000134 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxoglutaric acid
stoichiometric coefficient: 1.0

Reference/UniProt P46645
type: UnificationXref
id: P46645
db: UniProt

Cytoplasm
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005737

Reference/KEGG Compound C00729
type: UnificationXref
id: C00729
db: KEGG Compound

Oxoglutaric acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: Oxoglutaric acid

Tyrosine aminotransferase
type: ProteinReference
xref: Reference/UniProt Q9LVY1
organism: Arabidopsis thaliana

Histidinol-phosphate aminotransferase 1, chloroplastic
type: ProteinReference
xref: Reference/UniProt B9DHD3
organism: Arabidopsis thaliana

L-Phenylalanine
type: SmallMolecule
cellular location: Cytosol
entity reference: L-Phenylalanine

Reference/PubChem-compound 784
type: UnificationXref
id: 784
db: PubChem-compound

Arabidopsis thaliana
type: BioSource
xref: Reference/TAXONOMY 3702

Reference/CAS 7732-18-5
type: UnificationXref
id: 7732-18-5
db: CAS

Compound/PW C096945/Stoichiometry/1.0
type: Stoichiometry
physical entity: Tropinone
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 17166
type: UnificationXref
id: CHEBI:17166
db: ChEBI

Oxygen
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001377
xref: Reference/ChemSpider 952
xref: Reference/KEGG Compound C00007
xref: Reference/ChEBI CHEBI 15379
xref: Reference/PubChem-compound 977
xref: Reference/BioCyc CPD-6641
xref: Reference/CAS 7782-44-7
chemical formula: O2
molecular weight: 31.98983
structure: ChemicalStructure/PW C001065

Reference/HMDB HMDB0000159
type: UnificationXref
id: HMDB0000159
db: HMDB

Aspartate aminotransferase, cytoplasmic isozyme 1
type: Protein
cellular location: Cytoplasm
entity reference: Aspartate aminotransferase, cytoplasmic isozyme 1

Reference/BioCyc AMMONIA
type: UnificationXref
id: AMMONIA
db: BioCyc

ChemicalStructure/PW C000035
type: ChemicalStructure
structure format: SMILES
structure data: N

Reference/CAS 56-86-0
type: UnificationXref
id: 56-86-0
db: CAS

Primary amine oxidase
type: Complex
component stoichiometry: Protein/13579/Stoichiometry/2.0
component: Primary amine oxidase 1

2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)

Primary amine oxidase 1
type: ProteinReference
xref: Reference/UniProt O23349
organism: Arabidopsis thaliana

L-Glutamic acid
type: SmallMoleculeReference
xref: Reference/PubChem-compound 33032
xref: Reference/ChEBI CHEBI 16015
xref: Reference/ChemSpider 30572
xref: Reference/HMDB HMDB0000148
xref: Reference/CAS 56-86-0
xref: Reference/BioCyc GLT
xref: Reference/KEGG Compound C00025
chemical formula: C5H9NO4
molecular weight: 147.05316
structure: ChemicalStructure/PW C000095

Reference/HMDB HMDB0003661
type: UnificationXref
id: HMDB0003661
db: HMDB

Reference/BioCyc TROPINE
type: UnificationXref
id: TROPINE
db: BioCyc

Reference/CAS 156-06-9
type: UnificationXref
id: 156-06-9
db: CAS

Reference/PubChem-compound 33032
type: UnificationXref
id: 33032
db: PubChem-compound

Reference/SMPDB SMP0063474
type: UnificationXref
id: SMP0063474
db: SMPDB

Compound/PW C001565/Stoichiometry/1.0
type: Stoichiometry
physical entity: Cadaverine
stoichiometric coefficient: 1.0

Reference/UniProt Q9LHT0
type: UnificationXref
id: Q9LHT0
db: UniProt

Compound/PW C000095 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Glutamic acid
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 17295
type: UnificationXref
id: CHEBI:17295
db: ChEBI

Reference/CAS 7782-44-7
type: UnificationXref
id: 7782-44-7
db: CAS

Reference/PathWhiz PW064436
type: UnificationXref
id: PW064436
db: PathWhiz

Reference/HMDB HMDB0001377
type: UnificationXref
id: HMDB0001377
db: HMDB

Reference/KEGG Compound C06178
type: UnificationXref
id: C06178
db: KEGG Compound

Reference/HMDB HMDB0012815
type: UnificationXref
id: HMDB0012815
db: HMDB

Reference/BioCyc PHE
type: UnificationXref
id: PHE
db: BioCyc

ChemicalStructure/PW C012810
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)C(=O)CC1=CC=CC=C1

Reference/PubChem-compound 962
type: UnificationXref
id: 962
db: PubChem-compound

L-Phenylalanine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 6140
xref: Reference/HMDB HMDB0000159
xref: Reference/ChemSpider 5910
xref: Reference/ChEBI CHEBI 17295
xref: Reference/BioCyc PHE
xref: Reference/CAS 63-91-2
xref: Reference/KEGG Compound C00079
chemical formula: C9H11NO2
molecular weight: 165.07898
structure: ChemicalStructure/PW C000104

Reference/BioCyc 2-KETOGLUTARATE
type: UnificationXref
id: 2-KETOGLUTARATE
db: BioCyc

Reference/KEGG Compound C00079
type: UnificationXref
id: C00079
db: KEGG Compound

Reference/KEGG Compound C00080
type: UnificationXref
id: C00080
db: KEGG Compound

Reference/ChemSpider 972
type: UnificationXref
id: 972
db: ChemSpider

ChemicalStructure/PW C001065
type: ChemicalStructure
structure format: SMILES
structure data: O=O

Reference/PubChem-compound 79038
type: UnificationXref
id: 79038
db: PubChem-compound

Cadaverine
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0002322
xref: Reference/ChEBI CHEBI 18127
xref: Reference/CAS 462-94-2
xref: Reference/KEGG Compound C01672
xref: Reference/BioCyc CADAVERINE
xref: Reference/PubChem-compound 273
xref: Reference/ChemSpider 13866593
chemical formula: C5H14N2
molecular weight: 102.1157
structure: ChemicalStructure/PW C001565

Oxoglutaric acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Oxoglutaric acid

Reference/HMDB HMDB0000051
type: UnificationXref
id: HMDB0000051
db: HMDB

ChemicalStructure/PW C000095
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CCC(O)=O)C(O)=O

Reference/HMDB HMDB0002111
type: UnificationXref
id: HMDB0002111
db: HMDB

Reference/ChEBI CHEBI 15377
type: UnificationXref
id: CHEBI:15377
db: ChEBI

Reference/ChEBI CHEBI 15379
type: UnificationXref
id: CHEBI:15379
db: ChEBI

5-Aminopentanal
type: SmallMolecule
entity reference: 5-Aminopentanal

Reference/ChEBI CHEBI 15378
type: UnificationXref
id: CHEBI:15378
db: ChEBI

ChemicalStructure/PW C040034
type: ChemicalStructure
structure format: SMILES
structure data: [H+]

Chloroplast
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0009507

Compound/PW C000104 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Phenylalanine
stoichiometric coefficient: 1.0

L-Phenylalanine
type: SmallMolecule
cellular location: Chloroplast
entity reference: L-Phenylalanine

Reference/ChemSpider 5910
type: UnificationXref
id: 5910
db: ChemSpider

Reference/ChemSpider 388845
type: UnificationXref
id: 388845
db: ChemSpider

Reference/PubChem-compound 273
type: UnificationXref
id: 273
db: PubChem-compound

Reference/PubChem-compound 5886
type: UnificationXref
id: 5886
db: PubChem-compound

Reference/CAS 532-24-1
type: UnificationXref
id: 532-24-1
db: CAS

Reference/CAS 14475-60-6
type: UnificationXref
id: 14475-60-6
db: CAS

Compound/PW C001420/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Aspartate aminotransferase, cytoplasmic isozyme 1
type: ProteinReference
xref: Reference/UniProt P46645
organism: Arabidopsis thaliana

Aspartate aminotransferase, cytoplasmic isozyme 2
type: Protein
cellular location: Cytoplasm
entity reference: Aspartate aminotransferase, cytoplasmic isozyme 2

Reference/ChemSpider 10180559
type: UnificationXref
id: 10180559
db: ChemSpider

Aspartate aminotransferase, cytoplasmic isozyme 2
type: ProteinReference
xref: Reference/UniProt P46646
organism: Arabidopsis thaliana

Reference/ChemSpider 393722
type: UnificationXref
id: 393722
db: ChemSpider

Reference/BioCyc CPD-394
type: UnificationXref
id: CPD-394
db: BioCyc

Cadaverine
type: SmallMolecule
entity reference: Cadaverine

Reference/PubChem-compound 22833512
type: UnificationXref
id: 22833512
db: PubChem-compound

Reference/ChEBI CHEBI 30851
type: UnificationXref
id: CHEBI:30851
db: ChEBI

Reference/PubChem-compound 443849
type: UnificationXref
id: 443849
db: PubChem-compound

Hydrogen peroxide
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0003125
xref: Reference/PubChem-compound 784
xref: Reference/ChemSpider 763
xref: Reference/CAS 7722-84-1
xref: Reference/BioCyc HYDROGEN-PEROXIDE
xref: Reference/ChEBI CHEBI 16240
xref: Reference/KEGG Compound C00027
chemical formula: H2O2
molecular weight: 34.005478
structure: ChemicalStructure/PW C001783

Water
type: SmallMoleculeReference
xref: Reference/PubChem-compound 962
xref: Reference/ChEBI CHEBI 15377
xref: Reference/KEGG Compound C00001
xref: Reference/ChemSpider 937
xref: Reference/HMDB HMDB0002111
xref: Reference/CAS 7732-18-5
chemical formula: H2O
molecular weight: 18.010565
structure: ChemicalStructure/PW C001420

Compound/PW C001951/Stoichiometry/1.0
type: Stoichiometry
physical entity: N-Methylputrescine
stoichiometric coefficient: 1.0

Reference/KEGG Compound C02723
type: UnificationXref
id: C02723
db: KEGG Compound

Reference/PubChem-compound 977
type: UnificationXref
id: 977
db: PubChem-compound

Reference/HMDB HMDB0059597
type: UnificationXref
id: HMDB0059597
db: HMDB

2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
type: SmallMolecule
cellular location: Chloroplast
entity reference: 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)

Compound/PW C000104 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Phenylalanine
stoichiometric coefficient: 1.0

L-Phenylalanine
type: SmallMolecule
entity reference: L-Phenylalanine
name: SubPathwayOutput

SubPathwayInteraction57050
type: Interaction
name: SubPathway57050Reaction
name: SubPathwayReaction
participant: L-Phenylalanine

Reference/KEGG Compound C00783
type: UnificationXref
id: C00783
db: KEGG Compound

Compound/PW C041153/Stoichiometry/1.0
type: Stoichiometry
physical entity: 1-Methylpyrrolinium
stoichiometric coefficient: 1.0

Compound/PW C012810 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Oxo-3-phenylpropanoic acid (Mixture oxo and keto)
stoichiometric coefficient: 1.0

ChemicalStructure/PW C041153
type: ChemicalStructure
structure format: SMILES
structure data: C[N+]1=CCCC1