Reference/BioCyc 3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE
type: UnificationXref
id: 3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE
db: BioCyc

Compound/PW C000174 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Succinic acid
stoichiometric coefficient: 1.0

Serine hydroxymethyltransferase, cytosolic
type: ProteinReference
xref: Reference/UniProt Q2KIP4
organism: Bos taurus

Trimethyllysine dioxygenase, mitochondrial
type: ProteinReference
xref: Reference/UniProt Q0VC74
organism: Bos taurus

Reference/KEGG Compound C00318
type: UnificationXref
id: C00318
db: KEGG Compound

Histone-lysine N-methyltransferase SETD7
type: ProteinReference
xref: Reference/UniProt F1MUT0
organism: Bos taurus

Reference/ChemSpider 937
type: UnificationXref
id: 937
db: ChemSpider

S-Adenosylhomocysteine
type: SmallMolecule
cellular location: Nucleoplasm
entity reference: S-Adenosylhomocysteine

Reference/PubChem-compound 439153
type: UnificationXref
id: 439153
db: PubChem-compound

ChemicalStructure/PW C001420
type: ChemicalStructure
structure format: SMILES
structure data: O

Reference/ChemSpider 131
type: UnificationXref
id: 131
db: ChemSpider

Succinic acid
type: SmallMolecule
cellular location: Mitochondrion
entity reference: Succinic acid

Reference/ChemSpider 130
type: UnificationXref
id: 130
db: ChemSpider

Reference/HMDB HMDB0001185
type: UnificationXref
id: HMDB0001185
db: HMDB

Reference/ChemSpider 50
type: UnificationXref
id: 50
db: ChemSpider

Compound/PW C001037 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 4-Trimethylammoniobutanal
stoichiometric coefficient: 1.0

Reference/TAXONOMY 9913
type: UnificationXref
id: 9913
db: TAXONOMY

N6,N6,N6-Trimethyl-L-lysine
type: SmallMolecule
cellular location: Mitochondrion
entity reference: N6,N6,N6-Trimethyl-L-lysine

4-trimethylaminobutyraldehyde dehydrogenase
type: ProteinReference
xref: Reference/UniProt Q2KJH9
organism: Bos taurus

Trimethyllysine dioxygenase, mitochondrial
type: Protein
cellular location: Mitochondrion
entity reference: Trimethyllysine dioxygenase, mitochondrial

Reference/PubChem-compound 5962
type: UnificationXref
id: 5962
db: PubChem-compound

Reference/CAS 64595-66-0
type: UnificationXref
id: 64595-66-0
db: CAS

Reference/PubChem-compound 51
type: UnificationXref
id: 51
db: PubChem-compound

Water
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Water

Reference/ChEBI CHEBI 15846
type: UnificationXref
id: CHEBI:15846
db: ChEBI

L-Carnitine
type: SmallMoleculeReference
xref: Reference/BioCyc CARNITINE
xref: Reference/ChEBI CHEBI 16347
xref: Reference/PubChem-compound 10917
xref: Reference/CAS 541-15-1
xref: Reference/KEGG Compound C00318
xref: Reference/HMDB HMDB0000062
xref: Reference/ChemSpider 10455
chemical formula: C7H15NO3
molecular weight: 161.1052
structure: ChemicalStructure/PW C000044

N6,N6,N6-Trimethyl-L-lysine
type: SmallMolecule
cellular location: Nucleoplasm
entity reference: N6,N6,N6-Trimethyl-L-lysine

Reference/ChemSpider 5747
type: UnificationXref
id: 5747
db: ChemSpider

Glycine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Glycine

S-Adenosylmethionine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 24762165
xref: Reference/KEGG Compound C00019
xref: Reference/ChemSpider 31983
xref: Reference/ChEBI CHEBI 15414
xref: Reference/CAS 485-80-3
xref: Reference/BioCyc S-ADENOSYLMETHIONINE
xref: Reference/HMDB HMDB0001185
chemical formula: C15H23N6O5S
molecular weight: 399.14505
structure: ChemicalStructure/PW C000921

Reference/BRENDA TISSUE ONTOLOGY BTO 0000759
type: UnificationXref
id: BTO:0000759
db: BRENDA TISSUE ONTOLOGY

Protein/15452 Mitochondrion/Stoichiometry/2.0
type: Stoichiometry
physical entity: Trimethyllysine dioxygenase, mitochondrial
stoichiometric coefficient: 2.0

Reference/PubChem-compound 1038
type: UnificationXref
id: 1038
db: PubChem-compound

Protein/15462 Cytoplasm/Stoichiometry/4.0
type: Stoichiometry
physical entity: 4-trimethylaminobutyraldehyde dehydrogenase
stoichiometric coefficient: 4.0

Reference/BioCyc LYS
type: UnificationXref
id: LYS
db: BioCyc

Reference/ChemSpider 952
type: UnificationXref
id: 952
db: ChemSpider

Carbon dioxide
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Carbon dioxide

Reference/ChemSpider 274
type: UnificationXref
id: 274
db: ChemSpider

Oxoglutaric acid
type: SmallMoleculeReference
xref: Reference/CAS 328-50-7
xref: Reference/PubChem-compound 51
xref: Reference/BioCyc 2-KETOGLUTARATE
xref: Reference/HMDB HMDB0000208
xref: Reference/ChEBI CHEBI 30915
xref: Reference/KEGG Compound C00026
xref: Reference/ChemSpider 50
chemical formula: C5H6O5
molecular weight: 146.02153
structure: ChemicalStructure/PW C000134

Reference/ChEBI CHEBI 16908
type: UnificationXref
id: CHEBI:16908
db: ChEBI

Compound/PW C000749 Nucleoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: S-Adenosylhomocysteine
stoichiometric coefficient: 1.0

Reference/BioCyc ADENOSYL-HOMO-CYS
type: UnificationXref
id: ADENOSYL-HOMO-CYS
db: BioCyc

3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
type: SmallMolecule
cellular location: Mitochondrion
entity reference: 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine

Reference/CAS 485-80-3
type: UnificationXref
id: 485-80-3
db: CAS

Reference/UniProt F1MUT0
type: UnificationXref
id: F1MUT0
db: UniProt

Trimethyllysine dioxygenase, mitochondrial
type: Protein
cellular location: Cytoplasm
entity reference: Trimethyllysine dioxygenase, mitochondrial

Reference/PubChem-compound 133
type: UnificationXref
id: 133
db: PubChem-compound

Reference/PubChem-compound 134
type: UnificationXref
id: 134
db: PubChem-compound

Reference/ChemSpider 1010
type: UnificationXref
id: 1010
db: ChemSpider

ChemicalStructure/PW C001098
type: ChemicalStructure
structure format: SMILES
structure data: C[N+](C)(C)CCCC(O)[C@H](N)C(O)=O

L-Lysine
type: SmallMolecule
cellular location: Nucleoplasm
entity reference: L-Lysine

Reference/UniProt Q2KIP4
type: UnificationXref
id: Q2KIP4
db: UniProt

Mitochondrion
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005739

Reference/BioCyc GLY
type: UnificationXref
id: GLY
db: BioCyc

Compound/PW C040034 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Reference/CAS 541-15-1
type: UnificationXref
id: 541-15-1
db: CAS

N6,N6,N6-Trimethyl-L-lysine
type: SmallMolecule
cellular location: Nucleus
entity reference: N6,N6,N6-Trimethyl-L-lysine
name: SubPathwayInput

ChemicalStructure/PW C000921
type: ChemicalStructure
structure format: SMILES

Reference/CAS 979-92-0
type: UnificationXref
id: 979-92-0
db: CAS

Reference/HMDB HMDB0000208
type: UnificationXref
id: HMDB0000208
db: HMDB

Serine hydroxymethyltransferase, cytosolic
type: Complex
component stoichiometry: Protein/15457 Cytoplasm/Stoichiometry/4.0
cellular location: Cytoplasm
component: Serine hydroxymethyltransferase, cytosolic

Reference/BioCyc CPD-6641
type: UnificationXref
id: CPD-6641
db: BioCyc

S-Adenosylhomocysteine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 25246222
xref: Reference/ChemSpider 388301
xref: Reference/BioCyc ADENOSYL-HOMO-CYS
xref: Reference/CAS 979-92-0
xref: Reference/KEGG Compound C00021
xref: Reference/ChEBI CHEBI 16680
xref: Reference/HMDB HMDB0000939
chemical formula: C14H20N6O5S
molecular weight: 384.12158
structure: ChemicalStructure/PW C000749

Reference/BioCyc SUC
type: UnificationXref
id: SUC
db: BioCyc

Reference/CAS 58-68-4
type: UnificationXref
id: 58-68-4
db: CAS

Reference/HMDB HMDB0001422
type: UnificationXref
id: HMDB0001422
db: HMDB

Reference/CAS 56-87-1
type: UnificationXref
id: 56-87-1
db: CAS

ChemicalStructure/PW C000134
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(=O)C(O)=O

Reference/ChEBI CHEBI 30915
type: UnificationXref
id: CHEBI:30915
db: ChEBI

Reference/CAS 124-38-9
type: UnificationXref
id: 124-38-9
db: CAS

Glycine
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000123
xref: Reference/BioCyc GLY
xref: Reference/ChemSpider 730
xref: Reference/PubChem-compound 5257127
xref: Reference/CAS 56-40-6
xref: Reference/ChEBI CHEBI 15428
xref: Reference/KEGG Compound C00037
chemical formula: C2H5NO2
molecular weight: 75.03203
structure: ChemicalStructure/PW C000078

Reference/KEGG Compound C00007
type: UnificationXref
id: C00007
db: KEGG Compound

Reference/ChemSpider 388565
type: UnificationXref
id: 388565
db: ChemSpider

Transport7867
type: Transport
participant stoichiometry: Compound/PW C000899 Cytoplasm/Stoichiometry/1.0
right: 4-Trimethylammoniobutanoic acid
spontaneous: false
left: 4-Trimethylammoniobutanoic acid
name: 4-Trimethylammoniobutanoic acid (→) Transport: Bos taurus, Cell, Cytoplasm to Bos taurus, Liver, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Reference/ChEBI CHEBI 15414
type: UnificationXref
id: CHEBI:15414
db: ChEBI

Reference/KEGG Compound C00001
type: UnificationXref
id: C00001
db: KEGG Compound

4-trimethylaminobutyraldehyde dehydrogenase
type: Complex
component stoichiometry: Protein/15462 Cytoplasm/Stoichiometry/4.0
cellular location: Cytoplasm
component: 4-trimethylaminobutyraldehyde dehydrogenase

Reference/KEGG Compound C00004
type: UnificationXref
id: C00004
db: KEGG Compound

Reference/KEGG Compound C00003
type: UnificationXref
id: C00003
db: KEGG Compound

Liver
type: TissueVocabulary
xref: Reference/BRENDA TISSUE ONTOLOGY BTO 0000759

Reference/PathWhiz PW088206
type: UnificationXref
id: PW088206
db: PathWhiz

Compound/PW C001065 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxygen
stoichiometric coefficient: 1.0

SubPathwayInteraction108151
type: Interaction
name: SubPathway108151Reaction
name: SubPathwayReaction
participant: N6,N6,N6-Trimethyl-L-lysine

Reference/PubChem-compound 5257127
type: UnificationXref
id: 5257127
db: PubChem-compound

Reference/UniProt Q2KJH9
type: UnificationXref
id: Q2KJH9
db: UniProt

Reference/GENE ONTOLOGY GO 0005634
type: UnificationXref
id: GO:0005634
db: GENE ONTOLOGY

Trimethyllysine dioxygenase, mitochondrial
type: Complex
component stoichiometry: Protein/15452 Mitochondrion/Stoichiometry/2.0
cellular location: Mitochondrion
component: Trimethyllysine dioxygenase, mitochondrial

Oxygen
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Oxygen

Reference/KEGG Compound C00019
type: UnificationXref
id: C00019
db: KEGG Compound

Reference/ChEBI CHEBI 15741
type: UnificationXref
id: CHEBI:15741
db: ChEBI

NAD
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15846
xref: Reference/HMDB HMDB0000902
xref: Reference/CAS 53-84-9
xref: Reference/KEGG Compound C00003
xref: Reference/PubChem-compound 5893
xref: Reference/BioCyc NAD
xref: Reference/ChemSpider 5682
chemical formula: C21H28N7O14P2
molecular weight: 664.11694
structure: ChemicalStructure/PW C000721

Reference/BioCyc S-ADENOSYLMETHIONINE
type: UnificationXref
id: S-ADENOSYLMETHIONINE
db: BioCyc

Reference/KEGG Compound C00011
type: UnificationXref
id: C00011
db: KEGG Compound

ChemicalStructure/PW C001316
type: ChemicalStructure
structure format: SMILES
structure data: O=C=O

Compound/PW C000134 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxoglutaric acid
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0000902
type: UnificationXref
id: HMDB0000902
db: HMDB

Reference/BioCyc N6N6N6-TRIMETHYL-L-LYSINE
type: UnificationXref
id: N6N6N6-TRIMETHYL-L-LYSINE
db: BioCyc

Oxygen
type: SmallMolecule
cellular location: Mitochondrion
entity reference: Oxygen

Reference/PubChem-compound 1110
type: UnificationXref
id: 1110
db: PubChem-compound

N6,N6,N6-Trimethyl-L-lysine
type: SmallMoleculeReference
xref: Reference/CAS 19253-88-4
xref: Reference/HMDB HMDB0001325
xref: Reference/PubChem-compound 440120
xref: Reference/ChemSpider 389120
xref: Reference/KEGG Compound C03793
xref: Reference/ChEBI CHEBI 17311
xref: Reference/BioCyc N6N6N6-TRIMETHYL-L-LYSINE
chemical formula: C9H20N2O2
molecular weight: 188.15248
structure: ChemicalStructure/PW C001022

NADH
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001487
xref: Reference/CAS 58-68-4
xref: Reference/PubChem-compound 439153
xref: Reference/BioCyc NADH
xref: Reference/ChemSpider 388299
xref: Reference/KEGG Compound C00004
xref: Reference/ChEBI CHEBI 16908
chemical formula: C21H29N7O14P2
molecular weight: 665.12476
structure: ChemicalStructure/PW C001144

Reference/HMDB HMDB0001325
type: UnificationXref
id: HMDB0001325
db: HMDB

Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 1941
type: UnificationXref
id: CHEBI:1941
db: ChEBI

Succinic acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000254
xref: Reference/CAS 110-15-6
xref: Reference/ChEBI CHEBI 15741
xref: Reference/KEGG Compound C00042
xref: Reference/ChemSpider 1078
xref: Reference/PubChem-compound 1110
xref: Reference/BioCyc SUC
chemical formula: C4H6O4
molecular weight: 118.02661
structure: ChemicalStructure/PW C000174

Hydrogen Ion
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00080
xref: Reference/ChEBI CHEBI 15378
xref: Reference/HMDB HMDB0059597
xref: Reference/PubChem-compound 1038
xref: Reference/ChemSpider 1010
chemical formula: H
molecular weight: 1.007825
structure: ChemicalStructure/PW C040034

Reference/ChemSpider 388301
type: UnificationXref
id: 388301
db: ChemSpider

Reference/BioCyc CARNITINE
type: UnificationXref
id: CARNITINE
db: BioCyc

ChemicalStructure/PW C000118
type: ChemicalStructure
structure format: SMILES
structure data: NCCCC[C@H](N)C(O)=O

Reference/KEGG Compound C00021
type: UnificationXref
id: C00021
db: KEGG Compound

Reference/CAS 53-84-9
type: UnificationXref
id: 53-84-9
db: CAS

Reference/KEGG Compound C00026
type: UnificationXref
id: C00026
db: KEGG Compound

Reference/HMDB HMDB0000123
type: UnificationXref
id: HMDB0000123
db: HMDB

Histone-lysine N-methyltransferase SETD7
type: Protein
cellular location: Nucleoplasm
entity reference: Histone-lysine N-methyltransferase SETD7

Reference/GENE ONTOLOGY GO 0005739
type: UnificationXref
id: GO:0005739
db: GENE ONTOLOGY

Nucleoplasm
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005654

Reference/GENE ONTOLOGY GO 0005737
type: UnificationXref
id: GO:0005737
db: GENE ONTOLOGY

4-Trimethylammoniobutanal
type: SmallMoleculeReference
xref: Reference/CAS 64595-66-0
xref: Reference/HMDB HMDB0001345
xref: Reference/ChemSpider 130
xref: Reference/BioCyc 4-TRIMETHYLAMMONIOBUTANAL
xref: Reference/ChEBI CHEBI 18020
xref: Reference/KEGG Compound C01149
xref: Reference/PubChem-compound 133
chemical formula: C7H16NO
molecular weight: 130.12318
structure: ChemicalStructure/PW C001037

Compound/PW C001098 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
stoichiometric coefficient: 1.0

Compound/PW C000118 Nucleoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Lysine
stoichiometric coefficient: 1.0

NADH
type: SmallMolecule
cellular location: Cytoplasm
entity reference: NADH

ChemicalStructure/PW C000721
type: ChemicalStructure
structure format: SMILES

Reference/KEGG Compound C00037
type: UnificationXref
id: C00037
db: KEGG Compound

Serine hydroxymethyltransferase, cytosolic
type: Protein
cellular location: Cytoplasm
entity reference: Serine hydroxymethyltransferase, cytosolic

Reference/ChemSpider 5682
type: UnificationXref
id: 5682
db: ChemSpider

Reference/CAS 328-50-7
type: UnificationXref
id: 328-50-7
db: CAS

ChemicalStructure/PW C001144
type: ChemicalStructure
structure format: SMILES

ChemicalStructure/PW C001022
type: ChemicalStructure
structure format: SMILES
structure data: C[N+](C)(C)CCCC[C@H](N)C([O-])=O

Reference/HMDB HMDB0000254
type: UnificationXref
id: HMDB0000254
db: HMDB

ChemicalStructure/PW C000174
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(O)=O

Compound/PW C000174 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: Succinic acid
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0001345
type: UnificationXref
id: HMDB0001345
db: HMDB

Compound/PW C001316 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

4-Trimethylammoniobutanoic acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 4-Trimethylammoniobutanoic acid

3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine

Reference/KEGG Compound C00042
type: UnificationXref
id: C00042
db: KEGG Compound

Reference/KEGG Compound C03793
type: UnificationXref
id: C03793
db: KEGG Compound

Reference/KEGG Compound C01259
type: UnificationXref
id: C01259
db: KEGG Compound

Reference/ChemSpider 1078
type: UnificationXref
id: 1078
db: ChemSpider

Reference/KEGG Compound C00047
type: UnificationXref
id: C00047
db: KEGG Compound

Compound/PW C000134 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxoglutaric acid
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0000939
type: UnificationXref
id: HMDB0000939
db: HMDB

Carbon dioxide
type: SmallMolecule
cellular location: Mitochondrion
entity reference: Carbon dioxide

4-Trimethylammoniobutanal
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 4-Trimethylammoniobutanal

3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
type: SmallMoleculeReference
xref: Reference/BioCyc 3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE
xref: Reference/ChEBI CHEBI 15786
xref: Reference/ChemSpider 388565
xref: Reference/HMDB HMDB0001422
xref: Reference/KEGG Compound C01259
xref: Reference/PubChem-compound 25203146
chemical formula: C9H21N2O3
molecular weight: 205.15521
structure: ChemicalStructure/PW C001098

Reference/PubChem-compound 10917
type: UnificationXref
id: 10917
db: PubChem-compound

Bos taurus
type: BioSource
xref: Reference/TAXONOMY 9913

ChemicalStructure/PW C001037
type: ChemicalStructure
structure format: SMILES
structure data: C[N+](C)(C)CCCC=O

Compound/PW C001022 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: N6,N6,N6-Trimethyl-L-lysine
stoichiometric coefficient: 1.0

Cytoplasm
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005737

Compound/PW C001144 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADH
stoichiometric coefficient: 1.0

Reference/ChemSpider 10455
type: UnificationXref
id: 10455
db: ChemSpider

Reference/ChEBI CHEBI 18019
type: UnificationXref
id: CHEBI:18019
db: ChEBI

Reference/ChEBI CHEBI 15786
type: UnificationXref
id: CHEBI:15786
db: ChEBI

Oxoglutaric acid
type: SmallMolecule
cellular location: Mitochondrion
entity reference: Oxoglutaric acid

Reference/KEGG Compound C01149
type: UnificationXref
id: C01149
db: KEGG Compound

Reference/CAS 7732-18-5
type: UnificationXref
id: 7732-18-5
db: CAS

Reference/ChemSpider 388299
type: UnificationXref
id: 388299
db: ChemSpider

Reference/PubChem-compound 25203146
type: UnificationXref
id: 25203146
db: PubChem-compound

Reference/HMDB HMDB0001487
type: UnificationXref
id: HMDB0001487
db: HMDB

Hydrogen Ion
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Hydrogen Ion

Oxygen
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001377
xref: Reference/ChemSpider 952
xref: Reference/KEGG Compound C00007
xref: Reference/ChEBI CHEBI 15379
xref: Reference/PubChem-compound 977
xref: Reference/BioCyc CPD-6641
xref: Reference/CAS 7782-44-7
chemical formula: O2
molecular weight: 31.98983
structure: ChemicalStructure/PW C001065

4-Trimethylammoniobutanoic acid
type: SmallMoleculeReference
xref: Reference/KEGG Compound C01181
xref: Reference/CAS 407-64-7
xref: Reference/BioCyc 4-TRIMETHYLAMMONIOBUTANOATE
xref: Reference/ChemSpider 131
xref: Reference/HMDB HMDB0001161
xref: Reference/ChEBI CHEBI 1941
xref: Reference/PubChem-compound 134
chemical formula: C7H16NO2
molecular weight: 146.1181
structure: ChemicalStructure/PW C000899

Reference/ChEBI CHEBI 16526
type: UnificationXref
id: CHEBI:16526
db: ChEBI

Reference/CAS 56-40-6
type: UnificationXref
id: 56-40-6
db: CAS

Reference/ChEBI CHEBI 18020
type: UnificationXref
id: CHEBI:18020
db: ChEBI

Carnitine Synthesis
type: Pathway
pathway order: PathwayEnzymeReaction/2112198
pathway order: PathwayEnzymeReaction/2112199
pathway order: PathwayEnzymeReaction/2112197
pathway order: PathwaySubPathway/108151
pathway order: PathwayEnzymeReaction/2112200
pathway order: PathwayEnzymeReaction/2112201
pathway order: PathwayTransport/2112202
pathway component: Reaction145934
pathway component: ReactionCatalysis136047
pathway component: 2.1.2.1
pathway component: ReactionCatalysis136048
pathway component: 1.14.11.8
pathway component: Transport7867
pathway component: Protein degradation
pathway component: 2.1.1.43
pathway component: ReactionCatalysis136044
pathway component: ReactionCatalysis136045
pathway component: ReactionCatalysis136046
pathway component: 1.14.11.1
xref: Reference/PathWhiz PW088206
xref: Reference/SMPDB SMP0087187
organism: Bos taurus

Reference/CAS 7782-44-7
type: UnificationXref
id: 7782-44-7
db: CAS

1.14.11.1
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000044 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000174 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001065 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000899 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134 Cytoplasm/Stoichiometry/1.0
right: Carbon dioxide
right: Succinic acid
right: L-Carnitine
spontaneous: false
EC number: 1.14.11.1
left: Oxygen
left: 4-Trimethylammoniobutanoic acid
left: Oxoglutaric acid
name: 4-Trimethylammoniobutanoic acid + Oxoglutaric acid + Oxygen → Carbon dioxide + L-Carnitine + Succinic acid
conversion direction: LEFT_TO_RIGHT

Reference/HMDB HMDB0001377
type: UnificationXref
id: HMDB0001377
db: HMDB

Reaction145934
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001037 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000899 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000721 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001144 Cytoplasm/Stoichiometry/1.0
right: Hydrogen Ion
right: 4-Trimethylammoniobutanoic acid
right: NADH
spontaneous: false
left: 4-Trimethylammoniobutanal
left: Water
left: NAD
name: 4-Trimethylammoniobutanal + NAD + Water → 4-Trimethylammoniobutanoic acid + Hydrogen Ion + NADH
conversion direction: LEFT_TO_RIGHT

ChemicalStructure/PW C000044
type: ChemicalStructure
structure format: SMILES
structure data: C[N+](C)(C)C[C@H](O)CC([O-])=O

2.1.2.1
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001037 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001098 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000078 Cytoplasm/Stoichiometry/1.0
right: 4-Trimethylammoniobutanal
right: Glycine
spontaneous: false
EC number: 2.1.2.1
left: 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
name: 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine → 4-Trimethylammoniobutanal + Glycine
conversion direction: LEFT_TO_RIGHT

1.14.11.8
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001065 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000174 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001022 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001098 Mitochondrion/Stoichiometry/1.0
right: Carbon dioxide
right: 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
right: Succinic acid
spontaneous: false
EC number: 1.14.11.8
left: Oxoglutaric acid
left: N6,N6,N6-Trimethyl-L-lysine
left: Oxygen
name: N6,N6,N6-Trimethyl-L-lysine + Oxoglutaric acid + Oxygen → 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine + Carbon dioxide + Succinic acid
conversion direction: LEFT_TO_RIGHT

2.1.1.43
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000749 Nucleoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000921 Nucleoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000118 Nucleoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001022 Nucleoplasm/Stoichiometry/1.0
right: S-Adenosylhomocysteine
right: N6,N6,N6-Trimethyl-L-lysine
spontaneous: false
EC number: 2.1.1.43
left: L-Lysine
left: S-Adenosylmethionine
name: L-Lysine + S-Adenosylmethionine → N6,N6,N6-Trimethyl-L-lysine + S-Adenosylhomocysteine
conversion direction: LEFT_TO_RIGHT

Compound/PW C001065 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxygen
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 15428
type: UnificationXref
id: CHEBI:15428
db: ChEBI

Reference/GENE ONTOLOGY GO 0005654
type: UnificationXref
id: GO:0005654
db: GENE ONTOLOGY

4-trimethylaminobutyraldehyde dehydrogenase
type: Protein
cellular location: Cytoplasm
entity reference: 4-trimethylaminobutyraldehyde dehydrogenase

ReactionCatalysis136047
type: Catalysis
controller: 4-trimethylaminobutyraldehyde dehydrogenase
controlled: Reaction145934
control type: ACTIVATION

Reference/PubChem-compound 962
type: UnificationXref
id: 962
db: PubChem-compound

Reference/ChemSpider 31983
type: UnificationXref
id: 31983
db: ChemSpider

ReactionCatalysis136048
type: Catalysis
controller: Trimethyllysine dioxygenase, mitochondrial
controlled: 1.14.11.1
control type: ACTIVATION

ReactionCatalysis136044
type: Catalysis
controller: Histone-lysine N-methyltransferase SETD7
controlled: 2.1.1.43
control type: ACTIVATION

ReactionCatalysis136045
type: Catalysis
controller: Trimethyllysine dioxygenase, mitochondrial
controlled: 1.14.11.8
control type: ACTIVATION

Reference/BioCyc 2-KETOGLUTARATE
type: UnificationXref
id: 2-KETOGLUTARATE
db: BioCyc

ReactionCatalysis136046
type: Catalysis
controller: Serine hydroxymethyltransferase, cytosolic
controlled: 2.1.2.1
control type: ACTIVATION

Reference/ChemSpider 389120
type: UnificationXref
id: 389120
db: ChemSpider

Compound/PW C001022 Nucleoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: N6,N6,N6-Trimethyl-L-lysine
stoichiometric coefficient: 1.0

Carbon dioxide
type: SmallMoleculeReference
xref: Reference/PubChem-compound 280
xref: Reference/ChEBI CHEBI 16526
xref: Reference/ChemSpider 274
xref: Reference/HMDB HMDB0001967
xref: Reference/CAS 124-38-9
xref: Reference/KEGG Compound C00011
chemical formula: CO2
molecular weight: 43.98983
structure: ChemicalStructure/PW C001316

Reference/PubChem-compound 5893
type: UnificationXref
id: 5893
db: PubChem-compound

Reference/KEGG Compound C00080
type: UnificationXref
id: C00080
db: KEGG Compound

ChemicalStructure/PW C001065
type: ChemicalStructure
structure format: SMILES
structure data: O=O

Reference/CAS 110-15-6
type: UnificationXref
id: 110-15-6
db: CAS

Reference/ChemSpider 730
type: UnificationXref
id: 730
db: ChemSpider

Oxoglutaric acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Oxoglutaric acid

Reference/HMDB HMDB0002111
type: UnificationXref
id: HMDB0002111
db: HMDB

Reference/ChEBI CHEBI 15377
type: UnificationXref
id: CHEBI:15377
db: ChEBI

Reference/ChEBI CHEBI 15379
type: UnificationXref
id: CHEBI:15379
db: ChEBI

Reference/ChEBI CHEBI 16347
type: UnificationXref
id: CHEBI:16347
db: ChEBI

L-Lysine
type: SmallMoleculeReference
xref: Reference/BioCyc LYS
xref: Reference/ChEBI CHEBI 18019
xref: Reference/ChemSpider 5747
xref: Reference/CAS 56-87-1
xref: Reference/HMDB HMDB0000182
xref: Reference/PubChem-compound 5962
xref: Reference/KEGG Compound C00047
chemical formula: C6H14N2O2
molecular weight: 146.10553
structure: ChemicalStructure/PW C000118

Reference/CAS 19253-88-4
type: UnificationXref
id: 19253-88-4
db: CAS

Reference/ChEBI CHEBI 15378
type: UnificationXref
id: CHEBI:15378
db: ChEBI

ChemicalStructure/PW C040034
type: ChemicalStructure
structure format: SMILES
structure data: [H+]

ChemicalStructure/PW C000899
type: ChemicalStructure
structure format: SMILES
structure data: C[N+](C)(C)CCCC(O)=O

Compound/PW C001316 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

S-Adenosylmethionine
type: SmallMolecule
cellular location: Nucleoplasm
entity reference: S-Adenosylmethionine

Compound/PW C000078 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glycine
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 17311
type: UnificationXref
id: CHEBI:17311
db: ChEBI

Reference/KEGG Compound C01181
type: UnificationXref
id: C01181
db: KEGG Compound

Reference/PubChem-compound 280
type: UnificationXref
id: 280
db: PubChem-compound

Compound/PW C000921 Nucleoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: S-Adenosylmethionine
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0000062
type: UnificationXref
id: HMDB0000062
db: HMDB

Reference/HMDB HMDB0000182
type: UnificationXref
id: HMDB0000182
db: HMDB

Reference/BioCyc 4-TRIMETHYLAMMONIOBUTANAL
type: UnificationXref
id: 4-TRIMETHYLAMMONIOBUTANAL
db: BioCyc

Compound/PW C000899 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 4-Trimethylammoniobutanoic acid
stoichiometric coefficient: 1.0

Protein/15457 Cytoplasm/Stoichiometry/4.0
type: Stoichiometry
physical entity: Serine hydroxymethyltransferase, cytosolic
stoichiometric coefficient: 4.0

Compound/PW C000721 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: NAD
stoichiometric coefficient: 1.0

L-Carnitine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: L-Carnitine

ChemicalStructure/PW C000749
type: ChemicalStructure
structure format: SMILES

Reference/PubChem-compound 25246222
type: UnificationXref
id: 25246222
db: PubChem-compound

Reference/CAS 407-64-7
type: UnificationXref
id: 407-64-7
db: CAS

Reference/PubChem-compound 440120
type: UnificationXref
id: 440120
db: PubChem-compound

Water
type: SmallMoleculeReference
xref: Reference/PubChem-compound 962
xref: Reference/ChEBI CHEBI 15377
xref: Reference/KEGG Compound C00001
xref: Reference/ChemSpider 937
xref: Reference/HMDB HMDB0002111
xref: Reference/CAS 7732-18-5
chemical formula: H2O
molecular weight: 18.010565
structure: ChemicalStructure/PW C001420

Reference/BioCyc 4-TRIMETHYLAMMONIOBUTANOATE
type: UnificationXref
id: 4-TRIMETHYLAMMONIOBUTANOATE
db: BioCyc

Succinic acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Succinic acid

ChemicalStructure/PW C000078
type: ChemicalStructure
structure format: SMILES
structure data: NCC(O)=O

Reference/UniProt Q0VC74
type: UnificationXref
id: Q0VC74
db: UniProt

Reference/HMDB HMDB0001161
type: UnificationXref
id: HMDB0001161
db: HMDB

Reference/BioCyc NADH
type: UnificationXref
id: NADH
db: BioCyc

Nucleus
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005634

Reference/BioCyc NAD
type: UnificationXref
id: NAD
db: BioCyc

Reference/PubChem-compound 977
type: UnificationXref
id: 977
db: PubChem-compound

Reference/HMDB HMDB0059597
type: UnificationXref
id: HMDB0059597
db: HMDB

Reference/SMPDB SMP0087187
type: UnificationXref
id: SMP0087187
db: SMPDB

Reference/HMDB HMDB0001967
type: UnificationXref
id: HMDB0001967
db: HMDB

Reference/ChEBI CHEBI 16680
type: UnificationXref
id: CHEBI:16680
db: ChEBI

Compound/PW C001098 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: 3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
stoichiometric coefficient: 1.0

BiologicalState414
type: BioSource
xref: Reference/TAXONOMY 9913
name: Bos taurus, Liver
tissue: Liver

Reference/PubChem-compound 24762165
type: UnificationXref
id: 24762165
db: PubChem-compound

Compound/PW C000044 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Carnitine
stoichiometric coefficient: 1.0

Protein degradation
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway108151
pathway component: SubPathwayInteraction108151
name: SubPathway

NAD
type: SmallMolecule
cellular location: Cytoplasm
entity reference: NAD

N6,N6,N6-Trimethyl-L-lysine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: N6,N6,N6-Trimethyl-L-lysine
name: SubPathwayOutput