Reference/ChEBI CHEBI 16015
type: UnificationXref
id: CHEBI:16015
db: ChEBI

Reference/HMDB HMDB0060274
type: UnificationXref
id: HMDB0060274
db: HMDB

Compound/PW C001191 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Ribose 5-phosphate
stoichiometric coefficient: 1.0

chloroplastic glyceraldehyde 3-phosphate dehydrogenase
type: ProteinReference
xref: Reference/UniProt P25856
organism: Arabidopsis thaliana

Reference/PubChem-compound 6022
type: UnificationXref
id: 6022
db: PubChem-compound

Reference/ChemSpider 937
type: UnificationXref
id: 937
db: ChemSpider

Compound/PW C000691 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Xylulose 5-phosphate
stoichiometric coefficient: 1.0

NADP-dependent malic enzyme 4, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: NADP-dependent malic enzyme 4, chloroplastic

Xylulose 5-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Xylulose 5-phosphate

Reference/PubChem-compound 439153
type: UnificationXref
id: 439153
db: PubChem-compound

sedoheptulose-1,7-bisphosphatase
type: ProteinReference
xref: Reference/UniProt P46283
organism: Arabidopsis thaliana

fructose-1,6-bisphosphatase (cytosolic)
type: Protein
cellular location: Cytoplasm
entity reference: fructose-1,6-bisphosphatase (cytosolic)

Pyrophosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyrophosphate

ribulose-phosphate 3-epimerase
type: ProteinReference
xref: Reference/UniProt Q9C8T3
organism: Arabidopsis thaliana

D-sedoheptulose 7-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: D-sedoheptulose 7-phosphate

Fructose 1,6-bisphosphate
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001058
xref: Reference/BioCyc FRUCTOSE-16-DIPHOSPHATE
xref: Reference/CAS 488-69-7
xref: Reference/ChEBI CHEBI 16905
xref: Reference/ChemSpider 393165
xref: Reference/KEGG Compound C00354
xref: Reference/PubChem-compound 445557
chemical formula: C6H14O12P2
molecular weight: 339.99606
structure: ChemicalStructure/PW C000833

Reference/ChEBI CHEBI 16027
type: UnificationXref
id: CHEBI:16027
db: ChEBI

D-Ribulose 5-phosphate
type: SmallMolecule
cellular location: Cytosol
entity reference: D-Ribulose 5-phosphate

2-Oxoglutarate
type: SmallMolecule
cellular location: Mitochondrion
entity reference: 2-Oxoglutarate

ribose-5-phosphate isomerase 1
type: ProteinReference
xref: Reference/UniProt Q9C998
organism: Arabidopsis thaliana

Xylulose 5-phosphate/phosphate translocator, chloroplastic
type: ProteinReference
xref: Reference/UniProt Q9LF61

Reference/BioCyc ATP
type: UnificationXref
id: ATP
db: BioCyc

D-Ribose 5-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: D-Ribose 5-phosphate

ribulose-phosphate 3-epimerase
type: Protein
cellular location: Cytoplasm
entity reference: ribulose-phosphate 3-epimerase

Reference/UniProt Q8H1E2
type: UnificationXref
id: Q8H1E2
db: UniProt

Reference/ChemSpider 559142
type: UnificationXref
id: 559142
db: ChemSpider

Compound/PW C000479 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Ribulose 5-phosphate
stoichiometric coefficient: 1.0

D-ribulose-1,5-bisphosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 16710
chemical formula: C5H12O11P2
molecular weight: 309.98547
structure: ChemicalStructure/PW C041031

Sedoheptulose 1,7-bisphosphate
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0060274
chemical formula: C7H16O13P2
molecular weight: 370.00662
structure: ChemicalStructure/PW C041034

Compound/PW C000105 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Alanine
stoichiometric coefficient: 1.0

phosphoribulokinase
type: Protein
cellular location: Chloroplast
entity reference: phosphoribulokinase

Mitochondrial pyruvate carrier 1
type: ProteinReference
xref: Reference/UniProt Q949R9

Reference/ChemSpider 5742
type: UnificationXref
id: 5742
db: ChemSpider

Reference/PubChem-compound 439184
type: UnificationXref
id: 439184
db: PubChem-compound

Compound/PW C000414 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine triphosphate
stoichiometric coefficient: 1.0

Dicarboxylate transporter 1, chloroplastic
type: ProteinReference
xref: Reference/UniProt Q9LXV3

Reference/ChemSpider 388330
type: UnificationXref
id: 388330
db: ChemSpider

Mitochondrial dicarboxylate/tricarboxylate transporter DTC
type: ProteinReference
xref: Reference/UniProt Q9C5M0

Reference/ChEBI CHEBI 16474
type: UnificationXref
id: CHEBI:16474
db: ChEBI

Sodium/pyruvate cotransporter BASS2, chloroplastic
type: ProteinReference
xref: Reference/UniProt Q1EBV7

Carbon dioxide
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Carbon dioxide

Reference/GENE ONTOLOGY GO 0009507
type: UnificationXref
id: GO:0009507
db: GENE ONTOLOGY

Reference/ChemSpider 5858
type: UnificationXref
id: 5858
db: ChemSpider

L-Glutamic acid
type: SmallMolecule
cellular location: Mitochondrion
entity reference: L-Glutamic acid

Reference/ChemSpider 709
type: UnificationXref
id: 709
db: ChemSpider

Reference/ChemSpider 5735
type: UnificationXref
id: 5735
db: ChemSpider

Reference/UniProt Q9CA83
type: UnificationXref
id: Q9CA83
db: UniProt

Reference/ChemSpider 1010
type: UnificationXref
id: 1010
db: ChemSpider

D-Ribulose 5-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: D-Ribulose 5-phosphate

Fructose 1,6-bisphosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Fructose 1,6-bisphosphate

Protein/9661 Chloroplast/Stoichiometry/2.0
type: Stoichiometry
physical entity: Triosephosphate isomerase, cytosolic
stoichiometric coefficient: 2.0

Compound/PW C108843 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glycerate-3-Phosphate
stoichiometric coefficient: 1.0

Reference/CAS 488-69-7
type: UnificationXref
id: 488-69-7
db: CAS

Reference/PubChem-compound 439167
type: UnificationXref
id: 439167
db: PubChem-compound

Compound/PW C108868 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Malate
stoichiometric coefficient: 1.0

Reference/BioCyc PPI
type: UnificationXref
id: PPI
db: BioCyc

D-Glyceraldehyde 3-phosphate
type: SmallMoleculeReference
xref: Reference/BioCyc GAP
xref: Reference/ChEBI CHEBI 17138
xref: Reference/HMDB HMDB0001112
xref: Reference/ChemSpider 709
xref: Reference/KEGG Compound C00661
xref: Reference/PubChem-compound 729
xref: Reference/CAS 591-59-3
chemical formula: C3H7O6P
molecular weight: 169.99803
structure: ChemicalStructure/PW C000869

Reference/KEGG Compound C00117
type: UnificationXref
id: C00117
db: KEGG Compound

Reference/ChemSpider 388313
type: UnificationXref
id: 388313
db: ChemSpider

Compound/PW C000691 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Xylulose 5-phosphate
stoichiometric coefficient: 1.0

Reference/UniProt Q9MA79
type: UnificationXref
id: Q9MA79
db: UniProt

Adenosine monophosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Adenosine monophosphate

Reference/KEGG Compound C00231
type: UnificationXref
id: C00231
db: KEGG Compound

ReactionCatalysis202433
type: Catalysis
controller: chloroplastic glyceraldehyde 3-phosphate dehydrogenase
controlled: Reaction212794
control type: ACTIVATION

Compound/PW C108873 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Oxoglutarate
stoichiometric coefficient: 1.0

ReactionCatalysis202434
type: Catalysis
controller: Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic
controlled: Reaction212794
control type: ACTIVATION

Cytosol
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005829

Reference/KEGG Compound C00236
type: UnificationXref
id: C00236
db: KEGG Compound

Reference/UniProt P93819
type: UnificationXref
id: P93819
db: UniProt

Reference/KEGG Compound C00354
type: UnificationXref
id: C00354
db: KEGG Compound

Compound/PW C000833 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Fructose 1,6-bisphosphate
stoichiometric coefficient: 1.0

Reference/UniProt Q1EBV7
type: UnificationXref
id: Q1EBV7
db: UniProt

aspartate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: aspartate

Starch
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Starch
name: SubPathwayOutput

Fructose 6-phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Fructose 6-phosphate

Reference/KEGG Compound C00009
type: UnificationXref
id: C00009
db: KEGG Compound

Reference/KEGG Compound C00008
type: UnificationXref
id: C00008
db: KEGG Compound

Reference/KEGG Compound C00006
type: UnificationXref
id: C00006
db: KEGG Compound

Reference/ChEBI CHEBI 18009
type: UnificationXref
id: CHEBI:18009
db: ChEBI

1,3-Bisphosphoglycerate
type: SmallMolecule
cellular location: Chloroplast
entity reference: 1,3-Bisphosphoglycerate

Reference/KEGG Compound C00001
type: UnificationXref
id: C00001
db: KEGG Compound

Reference/BioCyc L-ALPHA-ALANINE
type: UnificationXref
id: L-ALPHA-ALANINE
db: BioCyc

Reference/PubChem-compound 122357
type: UnificationXref
id: 122357
db: PubChem-compound

NADP
type: SmallMolecule
cellular location: Chloroplast
entity reference: NADP

Reference/ChEBI CHEBI 18361
type: UnificationXref
id: CHEBI:18361
db: ChEBI

Reference/CAS 56-41-7
type: UnificationXref
id: 56-41-7
db: CAS

Reference/PubChem-compound 439190
type: UnificationXref
id: 439190
db: PubChem-compound

Reference/KEGG Compound C00005
type: UnificationXref
id: C00005
db: KEGG Compound

Reference/ChEBI CHEBI 18367
type: UnificationXref
id: CHEBI:18367
db: ChEBI

Reference/KEGG Compound C00004
type: UnificationXref
id: C00004
db: KEGG Compound

Reference/ChemSpider 1032
type: UnificationXref
id: 1032
db: ChemSpider

Reference/KEGG Compound C00003
type: UnificationXref
id: C00003
db: KEGG Compound

Reference/KEGG Compound C00002
type: UnificationXref
id: C00002
db: KEGG Compound

Compound/PW C108844 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: 1,3-Bisphosphoglycerate
stoichiometric coefficient: 1.0

Compound/PW C108866 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphoenolpyruvate
stoichiometric coefficient: 1.0

Compound/PW C001191 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Ribose 5-phosphate
stoichiometric coefficient: 1.0

Compound/PW C000833 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Fructose 1,6-bisphosphate
stoichiometric coefficient: 1.0

NAD
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15846
xref: Reference/HMDB HMDB0000902
xref: Reference/CAS 53-84-9
xref: Reference/KEGG Compound C00003
xref: Reference/PubChem-compound 5893
xref: Reference/BioCyc NAD
xref: Reference/ChemSpider 5682
chemical formula: C21H27N7O14P2
molecular weight: 663.10913
structure: ChemicalStructure/PW C000721

Adenosine triphosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Adenosine triphosphate

Reference/KEGG Compound C00011
type: UnificationXref
id: C00011
db: KEGG Compound

Reference/HMDB HMDB0000902
type: UnificationXref
id: HMDB0000902
db: HMDB

Reference/BioCyc FRUCTOSE-6P
type: UnificationXref
id: FRUCTOSE-6P
db: BioCyc

Triosephosphate isomerase, cytosolic
type: ProteinReference
xref: Reference/UniProt P48491
organism: Arabidopsis thaliana

Reference/ChEBI CHEBI 17363
type: UnificationXref
id: CHEBI:17363
db: ChEBI

Reference/KEGG Compound C00013
type: UnificationXref
id: C00013
db: KEGG Compound

Reference/BioCyc NAD(P)
type: UnificationXref
id: NAD(P)
db: BioCyc

Unknown
type: ProteinReference
organism: Arabidopsis thaliana

Pyruvate, phosphate dikinase 1, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Pyruvate, phosphate dikinase 1, chloroplastic

Reference/ChEBI CHEBI 17138
type: UnificationXref
id: CHEBI:17138
db: ChEBI

Hydrogen Ion
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00080
xref: Reference/ChEBI CHEBI 15378
xref: Reference/HMDB HMDB0059597
xref: Reference/PubChem-compound 1038
xref: Reference/ChemSpider 1010
chemical formula: H
molecular weight: 1.007825
structure: ChemicalStructure/PW C040034

ChemicalStructure/PW C042631
type: ChemicalStructure
structure format: SMILES
structure data: [Li+].[Li+].OCC(=O)COP([O-])([O-])=O

Reference/PathWhiz PW123937
type: UnificationXref
id: PW123937
db: PathWhiz

Reference/CAS 56-65-5
type: UnificationXref
id: 56-65-5
db: CAS

Reference/CAS 53-84-9
type: UnificationXref
id: 53-84-9
db: CAS

Reference/KEGG Compound C00020
type: UnificationXref
id: C00020
db: KEGG Compound

Reference/UniProt Q9SIU0
type: UnificationXref
id: Q9SIU0
db: UniProt

Reference/KEGG Compound C00025
type: UnificationXref
id: C00025
db: KEGG Compound

Reference/ChemSpider 62713
type: UnificationXref
id: 62713
db: ChemSpider

Compound/PW C000032 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine monophosphate
stoichiometric coefficient: 1.0

phosphoribulokinase
type: ProteinReference
xref: Reference/UniProt P25697
organism: Arabidopsis thaliana

Reference/UniProt Q949R9
type: UnificationXref
id: Q949R9
db: UniProt

Reference/UniProt Q9FX54
type: UnificationXref
id: Q9FX54
db: UniProt

Carbon Fixation in Photosynthetic Organisms
type: Pathway
pathway order: PathwayEnzymeReaction/2460682
pathway order: PathwayEnzymeReaction/2460683
pathway order: PathwayTransport/2460887
pathway order: PathwayEnzymeReaction/2460680
pathway order: PathwayTransport/2460800
pathway order: PathwayTransport/2460889
pathway order: PathwayTransport/2460883
pathway order: PathwayTransport/2460885
pathway order: PathwayEnzymeReaction/2460668
pathway order: PathwayEnzymeReaction/2460801
pathway order: PathwayEnzymeReaction/2460667
pathway order: PathwayEnzymeReaction/2460620
pathway order: PathwayEnzymeReaction/2460884
pathway order: PathwayEnzymeReaction/2460621
pathway order: PathwayEnzymeReaction/2460619
pathway order: PathwaySubPathway/112760
pathway order: PathwayTransport/2460902
pathway order: PathwaySubPathway/112763
pathway order: PathwayTransport/2460798
pathway order: PathwayEnzymeReaction/2460672
pathway order: PathwayEnzymeReaction/2460892
pathway order: PathwaySubPathway/112743
pathway order: PathwaySubPathway/112744
pathway order: PathwayEnzymeReaction/2460670
pathway order: PathwayEnzymeReaction/2460890
pathway order: PathwayTransport/2460893
pathway order: PathwayTransport/2460895
pathway order: PathwayTransport/2460896
pathway order: PathwayEnzymeReaction/2460613
pathway order: PathwayTransport/2460891
pathway order: PathwayEnzymeReaction/2460799
pathway order: PathwayEnzymeReaction/2460610
pathway order: PathwayEnzymeReaction/2460630
pathway order: PathwayEnzymeReaction/2460905
pathway order: PathwayEnzymeReaction/2460727
pathway order: PathwayEnzymeReaction/2460903
pathway order: PathwayEnzymeReaction/2460626
pathway order: PathwayEnzymeReaction/2460726
pathway component: ReactionCatalysis37840
pathway component: TransportCatalysis1964
pathway component: ReactionCatalysis202355
pathway component: ReactionCatalysis202433
pathway component: ReactionCatalysis202434
pathway component: ReactionCatalysis202351
pathway component: ReactionCatalysis202353
pathway component: ReactionCatalysis202391
pathway component: ReactionCatalysis202350
pathway component: 3.1.3.37
pathway component: ReactionCatalysis202390
pathway component: ReactionCatalysis37834
pathway component: 4.1.1.31
pathway component: Reaction212745
pathway component: ReactionCatalysis37830
pathway component: Reaction212747
pathway component: Gluconeogenesis
pathway component: Phenylalanine, tyrosine and tryptophan biosynthesis
pathway component: 2.7.9.1
pathway component: 2.6.1.1
pathway component: 1.1.1.39
pathway component: Reaction212754
pathway component: 2.6.1.2,2.6.1.-
pathway component: Reaction212712
pathway component: 4.1.2.13
pathway component: Reaction212715
pathway component: TransportCatalysis1948
pathway component: TransportCatalysis1947
pathway component: Transport10788
pathway component: Transport10783
pathway component: 5.1.3.1
pathway component: Reaction212794
pathway component: 1.1.1.82
pathway component: Transport10780
pathway component: Transport10782
pathway component: 2.2.1.1
pathway component: Reaction212718
pathway component: Reaction212719
pathway component: TransportCatalysis1951
pathway component: Reaction212721
pathway component: TransportCatalysis1953

Reference/UniProt P48491
type: UnificationXref
id: P48491
db: UniProt

ReactionCatalysis202355
type: Catalysis
controller: Ribulose bisphosphate carboxylase small chain 1A, chloroplastic
controlled: Reaction212723
control type: ACTIVATION

ChemicalStructure/PW C001019
type: ChemicalStructure
structure format: SMILES
structure data: O[C@H](COP(O)(O)=O)[C@@H](O)C=O

ReactionCatalysis202351
type: Catalysis
controller: fructose-bisphosphate aldolase (chloroplastic)
controlled: Reaction212719
control type: ACTIVATION

Reference/KEGG Compound C00279
type: UnificationXref
id: C00279
db: KEGG Compound

ReactionCatalysis202353
type: Catalysis
controller: Transketolase-2, chloroplastic
controlled: Reaction212721
control type: ACTIVATION

ChemicalStructure/PW C001144
type: ChemicalStructure
structure format: SMILES

Reference/BioCyc AMP
type: UnificationXref
id: AMP
db: BioCyc

ReactionCatalysis202350
type: Catalysis
controller: Triosephosphate isomerase
controlled: Reaction212718
control type: ACTIVATION

Reference/KEGG Compound C00041
type: UnificationXref
id: C00041
db: KEGG Compound

Compound/PW C001316 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

ChemicalStructure/PW C108867
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CC(=O)C(O)=O

ChemicalStructure/PW C108866
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)C(=C)OP(O)(O)=O

pyruvate
type: SmallMolecule
cellular location: Mitochondrion
entity reference: pyruvate

Reference/HMDB HMDB0000250
type: UnificationXref
id: HMDB0000250
db: HMDB

ChemicalStructure/PW C000170
type: ChemicalStructure
structure format: SMILES
structure data: OP(O)(=O)OP(O)(O)=O

Reference/HMDB HMDB0001341
type: UnificationXref
id: HMDB0001341
db: HMDB

ChemicalStructure/PW C108868
type: ChemicalStructure
structure format: SMILES
structure data: O[C@@H](CC(O)=O)C(O)=O

Compound/PW C108870 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: pyruvate
stoichiometric coefficient: 1.0

Reference/UniProt Q9SJU4
type: UnificationXref
id: Q9SJU4
db: UniProt

Malate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Malate

Oxaloacetate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Oxaloacetate

ChemicalStructure/PW C040759
type: ChemicalStructure
structure format: SMILES
structure data: OCC(=O)C(O)C(O)C(O)C(O)COP(O)(O)=O

ChemicalStructure/PW C001034
type: ChemicalStructure
structure format: SMILES

ChemicalStructure/PW C108870
type: ChemicalStructure
structure format: SMILES
structure data: CC(=O)C(O)=O

Reference/HMDB HMDB0001112
type: UnificationXref
id: HMDB0001112
db: HMDB

ChemicalStructure/PW C108874
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CC(O)=O)C(O)=O

ChemicalStructure/PW C108873
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(=O)C(O)=O

Reference/HMDB HMDB0000148
type: UnificationXref
id: HMDB0000148
db: HMDB

Compound/PW C108875 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-glutamate
stoichiometric coefficient: 1.0

Compound/PW C001019 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Erythrose 4-phosphate
stoichiometric coefficient: 1.0

Compound/PW C001144 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADH
stoichiometric coefficient: 1.0

ChemicalStructure/PW C108875
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CCC(O)=O)C(O)=O

Transport10788
type: Transport
participant stoichiometry: Compound/PW C000079 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000079 Cytoplasm/Stoichiometry/1.0
right: Fructose 6-phosphate
spontaneous: false
left: Fructose 6-phosphate
name: Fructose 6-phosphate (↔) Transport: Arabidopsis thaliana, Cell, Chloroplast to Arabidopsis thaliana, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Reference/CAS 7732-18-5
type: UnificationXref
id: 7732-18-5
db: CAS

Transport10783
type: Transport
participant stoichiometry: Compound/PW C000833 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000833 Cytoplasm/Stoichiometry/1.0
right: Fructose 1,6-bisphosphate
spontaneous: false
left: Fructose 1,6-bisphosphate
name: Fructose 1,6-bisphosphate (→) Transport: Arabidopsis thaliana, Cell, Chloroplast to Arabidopsis thaliana, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Reaction212794
type: BiochemicalReaction
participant stoichiometry: Compound/PW C108844 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000146 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000143 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000869 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Chloroplast/Stoichiometry/1.0
right: Phosphate
right: D-Glyceraldehyde 3-phosphate
right: NADP
spontaneous: false
left: Hydrogen Ion
left: 1,3-Bisphosphoglycerate
left: NADPH
name: 1,3-Bisphosphoglycerate + Hydrogen Ion + NADPH → D-Glyceraldehyde 3-phosphate + NADP + Phosphate
conversion direction: LEFT_TO_RIGHT

Reference/CAS 591-59-3
type: UnificationXref
id: 591-59-3
db: CAS

Reference/HMDB HMDB0001487
type: UnificationXref
id: HMDB0001487
db: HMDB

Reference/CAS 61-19-8
type: UnificationXref
id: 61-19-8
db: CAS

NAD
type: SmallMolecule
cellular location: Mitochondrion
entity reference: NAD

pyruvate
type: SmallMolecule
cellular location: Chloroplast
entity reference: pyruvate

ChemicalStructure/PW C000032
type: ChemicalStructure
structure format: SMILES

Transport10780
type: Transport
participant stoichiometry: Compound/PW C108870 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108870 Cytoplasm/Stoichiometry/1.0
right: pyruvate
spontaneous: false
left: pyruvate
name: pyruvate (→) Transport: Arabidopsis thaliana, Cell, Chloroplast to Arabidopsis thaliana, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Reference/UniProt P50318
type: UnificationXref
id: P50318
db: UniProt

Transport10782
type: Transport
participant stoichiometry: Compound/PW C108870 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108870 Mitochondrion/Stoichiometry/1.0
right: pyruvate
spontaneous: false
left: pyruvate
name: pyruvate (→) Transport: Arabidopsis thaliana, Cell, Cytoplasm to Arabidopsis thaliana, Cell, Mitochondrion
conversion direction: LEFT_TO_RIGHT

Reference/CAS 585-18-2
type: UnificationXref
id: 585-18-2
db: CAS

Reference/CAS 56-86-0
type: UnificationXref
id: 56-86-0
db: CAS

Adenosine diphosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Adenosine diphosphate

Adenosine triphosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15422
xref: Reference/PubChem-compound 5957
xref: Reference/HMDB HMDB0000538
xref: Reference/CAS 56-65-5
xref: Reference/ChemSpider 5742
xref: Reference/BioCyc ATP
xref: Reference/KEGG Compound C00002
chemical formula: C10H16N5O13P3
molecular weight: 506.99576
structure: ChemicalStructure/PW C000414

ReactionCatalysis202349
type: Catalysis
controller: Transketolase-2, chloroplastic
controlled: 2.2.1.1
control type: ACTIVATION

Transport10776
type: Transport
participant stoichiometry: Compound/PW C108868 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108868 Chloroplast/Stoichiometry/1.0
right: Malate
spontaneous: false
left: Malate
name: Malate (→) Transport: Arabidopsis thaliana, Cell, Cytoplasm to Arabidopsis thaliana, Cell, Chloroplast
conversion direction: LEFT_TO_RIGHT

Transport10777
type: Transport
participant stoichiometry: Compound/PW C108866 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108866 Chloroplast/Stoichiometry/1.0
right: Phosphoenolpyruvate
spontaneous: false
left: Phosphoenolpyruvate
name: Phosphoenolpyruvate (←) Transport: Arabidopsis thaliana, Cell, Cytoplasm to Arabidopsis thaliana, Cell, Chloroplast
conversion direction: LEFT_TO_RIGHT

ReactionCatalysis202346
type: Catalysis
controller: fructose-bisphosphate aldolase (chloroplastic)
controlled: 4.1.2.13
control type: ACTIVATION

Transport10778
type: Transport
participant stoichiometry: Compound/PW C108867 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108867 Chloroplast/Stoichiometry/1.0
right: Oxaloacetate
spontaneous: false
left: Oxaloacetate
name: Oxaloacetate (←) Transport: Arabidopsis thaliana, Cell, Chloroplast to Arabidopsis thaliana, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Transport10779
type: Transport
participant stoichiometry: Compound/PW C108868 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108868 Mitochondrion/Stoichiometry/1.0
right: Malate
spontaneous: false
left: Malate
name: Malate (→) Transport: Arabidopsis thaliana, Cell, Cytoplasm to Arabidopsis thaliana, Cell, Mitochondrion
conversion direction: LEFT_TO_RIGHT

ReactionCatalysis202347
type: Catalysis
controller: fructose-1,6-bisphosphatase (cytosolic)
controlled: Reaction212715
control type: ACTIVATION

ReactionCatalysis202343
type: Catalysis
controller: Phosphoglycerate kinase 2, chloroplastic
controlled: Reaction212712
control type: ACTIVATION

Reference/PubChem-compound 445557
type: UnificationXref
id: 445557
db: PubChem-compound

Transport10775
type: Transport
participant stoichiometry: Compound/PW C000479 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000479 Cytosol/Stoichiometry/1.0
right: D-Ribulose 5-phosphate
spontaneous: false
left: D-Ribulose 5-phosphate
name: D-Ribulose 5-phosphate (→) Transport: Arabidopsis thaliana, Cell, Cytosol to Arabidopsis thaliana, Cell, Chloroplast
conversion direction: LEFT_TO_RIGHT

Phosphoglycerate kinase 2, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Phosphoglycerate kinase 2, chloroplastic

Reference/HMDB HMDB0000045
type: UnificationXref
id: HMDB0000045
db: HMDB

Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic
type: Protein
cellular location: Chloroplast
entity reference: Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic

Transport10770
type: Transport
participant stoichiometry: Compound/PW C000691 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000691 Cytosol/Stoichiometry/1.0
right: Xylulose 5-phosphate
spontaneous: false
left: Xylulose 5-phosphate
name: Xylulose 5-phosphate (←) Transport: Arabidopsis thaliana, Cell, Cytosol to Arabidopsis thaliana, Cell, Chloroplast
conversion direction: LEFT_TO_RIGHT

Transport10771
type: Transport
participant stoichiometry: Compound/PW C001191 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001191 Chloroplast/Stoichiometry/1.0
right: D-Ribose 5-phosphate
spontaneous: false
left: D-Ribose 5-phosphate
name: D-Ribose 5-phosphate (←) Transport: Arabidopsis thaliana, Cell, Cytoplasm to Arabidopsis thaliana, Cell, Chloroplast
conversion direction: LEFT_TO_RIGHT

SubPathwayInteraction112743
type: Interaction
name: SubPathway112743Reaction
name: SubPathwayReaction

SubPathwayInteraction112744
type: Interaction
name: SubPathway112744Reaction
name: SubPathwayReaction
participant: Glycerone phosphate
participant: Starch

Reference/HMDB HMDB0000161
type: UnificationXref
id: HMDB0000161
db: HMDB

Reference/UniProt Q8RXN3
type: UnificationXref
id: Q8RXN3
db: UniProt

Reference/PubChem-compound 962
type: UnificationXref
id: 962
db: PubChem-compound

L-Alanine
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00041
xref: Reference/ChemSpider 5735
xref: Reference/ChEBI CHEBI 16977
xref: Reference/BioCyc L-ALPHA-ALANINE
xref: Reference/HMDB HMDB0000161
xref: Reference/CAS 56-41-7
xref: Reference/PubChem-compound 5950
chemical formula: C3H7NO2
molecular weight: 89.047676
structure: ChemicalStructure/PW C000105

sedoheptulose-1,7-bisphosphatase
type: Protein
cellular location: Chloroplast
entity reference: sedoheptulose-1,7-bisphosphatase

Reference/ChemSpider 5800
type: UnificationXref
id: 5800
db: ChemSpider

Reference/BioCyc RIBULOSE-5P
type: UnificationXref
id: RIBULOSE-5P
db: BioCyc

Reference/KEGG Compound C00199
type: UnificationXref
id: C00199
db: KEGG Compound

Reference/UniProt P25697
type: UnificationXref
id: P25697
db: UniProt

Ribulose bisphosphate carboxylase small chain 1A, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Ribulose bisphosphate carboxylase small chain 1A, chloroplastic

Carbon dioxide
type: SmallMoleculeReference
xref: Reference/PubChem-compound 280
xref: Reference/ChEBI CHEBI 16526
xref: Reference/ChemSpider 274
xref: Reference/HMDB HMDB0001967
xref: Reference/CAS 124-38-9
xref: Reference/KEGG Compound C00011
chemical formula: CO2
molecular weight: 43.98983
structure: ChemicalStructure/PW C001316

ReactionCatalysis202391
type: Catalysis
controller: Alanine aminotransferase 1, mitochondrial
controlled: 2.6.1.2,2.6.1.-
control type: ACTIVATION

Reference/KEGG Compound C00080
type: UnificationXref
id: C00080
db: KEGG Compound

Reference/KEGG Compound C00085
type: UnificationXref
id: C00085
db: KEGG Compound

Adenosine triphosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Adenosine triphosphate

ReactionCatalysis202390
type: Catalysis
controller: Unknown
controlled: Reaction212754
control type: ACTIVATION

Reference/PubChem-compound 729
type: UnificationXref
id: 729
db: PubChem-compound

Reference/HMDB HMDB0002111
type: UnificationXref
id: HMDB0002111
db: HMDB

ChemicalStructure/PW C000095
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CCC(O)=O)C(O)=O

Reference/CAS 14265-44-2
type: UnificationXref
id: 14265-44-2
db: CAS

4.1.1.31
type: BiochemicalReaction
participant stoichiometry: Compound/PW C108867 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108866 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104 Cytoplasm/Stoichiometry/1.0
right: Oxaloacetate
right: Phosphate
spontaneous: false
EC number: 4.1.1.31
left: Phosphoenolpyruvate
left: Carbon dioxide
left: Water
name: Carbon dioxide + Phosphoenolpyruvate + Water → Oxaloacetate + Phosphate
conversion direction: LEFT_TO_RIGHT

Reaction212745
type: BiochemicalReaction
participant stoichiometry: Compound/PW C108868 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108867 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000721 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001144 Cytoplasm/Stoichiometry/1.0
right: NAD
right: Malate
spontaneous: false
left: Hydrogen Ion
left: Oxaloacetate
left: NADH
name: Hydrogen Ion + NADH + Oxaloacetate → Malate + NAD
conversion direction: LEFT_TO_RIGHT

D-Ribulose 5-phosphate
type: SmallMoleculeReference
xref: Reference/CAS 4151-19-3
xref: Reference/BioCyc RIBULOSE-5P
xref: Reference/KEGG Compound C00199
xref: Reference/PubChem-compound 439184
xref: Reference/HMDB HMDB0000618
xref: Reference/ChEBI CHEBI 17363
chemical formula: C5H11O8P
molecular weight: 230.01915
structure: ChemicalStructure/PW C000479

Reaction212747
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000143 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000146 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108870 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108868 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Chloroplast/Stoichiometry/1.0
right: pyruvate
right: Hydrogen Ion
right: Carbon dioxide
right: NADPH
spontaneous: false
left: Malate
left: NADP
name: Malate + NADP → Carbon dioxide + Hydrogen Ion + NADPH + pyruvate
conversion direction: LEFT_TO_RIGHT

Reference/CAS 58-64-0
type: UnificationXref
id: 58-64-0
db: CAS

Compound/PW C001104 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphate
stoichiometric coefficient: 1.0

Compound/PW C001316 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

Reference/UniProt P46283
type: UnificationXref
id: P46283
db: UniProt

ribose-5-phosphate isomerase 1
type: Protein
cellular location: Cytoplasm
entity reference: ribose-5-phosphate isomerase 1

Glycerate-3-Phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Glycerate-3-Phosphate
name: SubPathwayOutput

Gluconeogenesis
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway112744
pathway component: SubPathwayInteraction112744
name: SubPathway

Phenylalanine, tyrosine and tryptophan biosynthesis
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway112743
pathway component: SubPathwayInteraction112743
name: SubPathway

Reference/BioCyc RIBOSE-5P
type: UnificationXref
id: RIBOSE-5P
db: BioCyc

ChemicalStructure/PW C001191
type: ChemicalStructure
structure format: SMILES

2.7.9.1
type: BiochemicalReaction
participant stoichiometry: Compound/PW C108866 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000032 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108870 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000170 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Chloroplast/Stoichiometry/1.0
right: Phosphoenolpyruvate
right: Adenosine monophosphate
right: Pyrophosphate
spontaneous: false
EC number: 2.7.9.1
left: Phosphate
left: pyruvate
left: Adenosine triphosphate
name: Adenosine triphosphate + Phosphate + pyruvate → Adenosine monophosphate + Phosphoenolpyruvate + Pyrophosphate
conversion direction: LEFT_TO_RIGHT

NADPH
type: SmallMolecule
cellular location: Chloroplast
entity reference: NADPH

L-glutamate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: L-glutamate

2.6.1.1
type: BiochemicalReaction
participant stoichiometry: Compound/PW C108867 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108873 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108874 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108875 Cytoplasm/Stoichiometry/1.0
right: 2-Oxoglutarate
right: aspartate
spontaneous: false
EC number: 2.6.1.1
left: Oxaloacetate
left: L-glutamate
name: L-glutamate + Oxaloacetate → 2-Oxoglutarate + aspartate
conversion direction: LEFT_TO_RIGHT

D-Ribose 5-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: D-Ribose 5-phosphate

1.1.1.39
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001144 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108868 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000721 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108870 Mitochondrion/Stoichiometry/1.0
right: Carbon dioxide
right: pyruvate
right: Hydrogen Ion
right: NADH
spontaneous: false
EC number: 1.1.1.39
left: NAD
left: Malate
name: Malate + NAD → Carbon dioxide + Hydrogen Ion + NADH + pyruvate
conversion direction: LEFT_TO_RIGHT

D-Erythrose 4-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: D-Erythrose 4-phosphate

Reaction212754
type: BiochemicalReaction
participant stoichiometry: Compound/PW C108867 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108866 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Cytoplasm/Stoichiometry/1.0
right: Phosphoenolpyruvate
right: Carbon dioxide
right: Adenosine diphosphate
spontaneous: false
left: Oxaloacetate
left: Adenosine triphosphate
name: Adenosine triphosphate + Oxaloacetate → Adenosine diphosphate + Carbon dioxide + Phosphoenolpyruvate
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 644102
type: UnificationXref
id: 644102
db: PubChem-compound

2.6.1.2,2.6.1.-
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000105 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000095 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108873 Mitochondrion/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108870 Mitochondrion/Stoichiometry/1.0
right: L-Alanine
right: 2-Oxoglutarate
spontaneous: false
EC number: 2.6.1.2,2.6.1.-
left: L-Glutamic acid
left: pyruvate
name: L-Glutamic acid + pyruvate → 2-Oxoglutarate + L-Alanine
conversion direction: LEFT_TO_RIGHT

Starch
type: SmallMoleculeReference

Reference/PubChem-compound 6083
type: UnificationXref
id: 6083
db: PubChem-compound

Compound/PW C000721 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: NAD
stoichiometric coefficient: 1.0

Reference/UniProt O23404
type: UnificationXref
id: O23404
db: UniProt

Reference/BioCyc XYLULOSE-5-PHOSPHATE
type: UnificationXref
id: XYLULOSE-5-PHOSPHATE
db: BioCyc

1.1.1.82
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000146 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000143 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108868 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108867 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Chloroplast/Stoichiometry/1.0
right: Malate
right: NADP
spontaneous: false
EC number: 1.1.1.82
left: Oxaloacetate
left: Hydrogen Ion
left: NADPH
name: Hydrogen Ion + NADPH + Oxaloacetate → Malate + NADP
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 22833512
type: UnificationXref
id: 22833512
db: PubChem-compound

Water
type: SmallMoleculeReference
xref: Reference/PubChem-compound 962
xref: Reference/ChEBI CHEBI 15377
xref: Reference/KEGG Compound C00001
xref: Reference/ChemSpider 937
xref: Reference/HMDB HMDB0002111
xref: Reference/CAS 7732-18-5
chemical formula: H2O
molecular weight: 18.010565
structure: ChemicalStructure/PW C001420

Compound/PW C108873 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Oxoglutarate
stoichiometric coefficient: 1.0

Triosephosphate isomerase, cytosolic
type: Protein
cellular location: Chloroplast
entity reference: Triosephosphate isomerase, cytosolic

ChemicalStructure/PW C000079
type: ChemicalStructure
structure format: SMILES

Compound/PW C000095 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Glutamic acid
stoichiometric coefficient: 1.0

Reference/ChemSpider 393165
type: UnificationXref
id: 393165
db: ChemSpider

Reference/BioCyc NADH
type: UnificationXref
id: NADH
db: BioCyc

Xylulose 5-phosphate
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000868
xref: Reference/KEGG Compound C00231
xref: Reference/BioCyc XYLULOSE-5-PHOSPHATE
xref: Reference/PubChem-compound 439190
xref: Reference/CAS 60802-29-1
xref: Reference/ChEBI CHEBI 16332
xref: Reference/ChemSpider 388330
chemical formula: C5H11O8P
molecular weight: 230.01915
structure: ChemicalStructure/PW C000691

Reference/BioCyc NAD
type: UnificationXref
id: NAD
db: BioCyc

Compound/PW C000079 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Fructose 6-phosphate
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0059597
type: UnificationXref
id: HMDB0059597
db: HMDB

Malate dehydrogenase [NADP], chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Malate dehydrogenase [NADP], chloroplastic

ReactionCatalysis202388
type: Catalysis
controller: Aspartate aminotransferase, cytoplasmic isozyme 2
controlled: 2.6.1.1
control type: ACTIVATION

ReactionCatalysis202389
type: Catalysis
controller: NAD-dependent malic enzyme 1, mitochondrial
controlled: 1.1.1.39
control type: ACTIVATION

ReactionCatalysis202385
type: Catalysis
controller: Pyruvate, phosphate dikinase 1, chloroplastic
controlled: 2.7.9.1
control type: ACTIVATION

ReactionCatalysis202386
type: Catalysis
controller: Malate dehydrogenase [NADP], chloroplastic
controlled: 1.1.1.82
control type: ACTIVATION

Reference/HMDB HMDB0001058
type: UnificationXref
id: HMDB0001058
db: HMDB

ReactionCatalysis202380
type: Catalysis
controller: Phosphoenolpyruvate carboxylase 1
controlled: 4.1.1.31
control type: ACTIVATION

fructose-bisphosphate aldolase (chloroplastic)
type: ProteinReference
xref: Reference/UniProt Q9SJU4
organism: Arabidopsis thaliana

ReactionCatalysis202381
type: Catalysis
controller: Malate dehydrogenase, cytoplasmic
controlled: Reaction212745
control type: ACTIVATION

ReactionCatalysis202383
type: Catalysis
controller: NADP-dependent malic enzyme 4, chloroplastic
controlled: Reaction212747
control type: ACTIVATION

Glycolysis(dark)/ Gluconeogenesis(light)
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway112763
pathway component: SubPathwayInteraction112763
name: SubPathway

NAD
type: SmallMolecule
cellular location: Cytoplasm
entity reference: NAD

fructose-1,6-bisphosphatase (cytosolic)
type: ProteinReference
xref: Reference/UniProt Q9MA79
organism: Arabidopsis thaliana

Glyoxylate and dicarboxylate metabolsim
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway112760
pathway component: SubPathwayInteraction112760
name: SubPathway

Reference/HMDB HMDB0062754
type: UnificationXref
id: HMDB0062754
db: HMDB

Reference/ChemSpider 30572
type: UnificationXref
id: 30572
db: ChemSpider

Reference/ChemSpider 17215925
type: UnificationXref
id: 17215925
db: ChemSpider

Compound/PW C000479 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Ribulose 5-phosphate
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 57483
type: UnificationXref
id: CHEBI:57483
db: ChEBI

Reference/TAXONOMY 3702
type: UnificationXref
id: 3702
db: TAXONOMY

Compound/PW C000170 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyrophosphate
stoichiometric coefficient: 1.0

Reference/UniProt Q9C998
type: UnificationXref
id: Q9C998
db: UniProt

Malate dehydrogenase, cytoplasmic
type: ProteinReference
xref: Reference/UniProt P93819
organism: Arabidopsis thaliana

Compound/PW C000079 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Fructose 6-phosphate
stoichiometric coefficient: 1.0

ChemicalStructure/PW C000691
type: ChemicalStructure
structure format: SMILES
structure data: OCC(=O)[C@@H](O)[C@H](O)COP(O)(O)=O

ChemicalStructure/PW C001420
type: ChemicalStructure
structure format: SMILES
structure data: O

Glycerate-3-Phosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00197
chemical formula: C3H7O7P
molecular weight: 185.99294
structure: ChemicalStructure/PW C108843

1,3-Bisphosphoglycerate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00236
chemical formula: C3H8O10P2
molecular weight: 265.95926
structure: ChemicalStructure/PW C108844

Adenosine monophosphate
type: SmallMoleculeReference
xref: Reference/CAS 61-19-8
xref: Reference/ChemSpider 5858
xref: Reference/HMDB HMDB0000045
xref: Reference/BioCyc AMP
xref: Reference/ChEBI CHEBI 16027
xref: Reference/PubChem-compound 6083
xref: Reference/KEGG Compound C00020
chemical formula: C10H14N5O7P
molecular weight: 347.06308
structure: ChemicalStructure/PW C000032

Hydrogen Ion
type: SmallMolecule
cellular location: Chloroplast
entity reference: Hydrogen Ion

Reference/HMDB HMDB0000538
type: UnificationXref
id: HMDB0000538
db: HMDB

Aspartate aminotransferase, cytoplasmic isozyme 2
type: Protein
cellular location: Cytoplasm
entity reference: Aspartate aminotransferase, cytoplasmic isozyme 2

Compound/PW C040034 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Phosphate

Reference/CAS 643-13-0
type: UnificationXref
id: 643-13-0
db: CAS

Unknown
type: Protein
entity reference: Unknown

Water
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Water

Reference/ChEBI CHEBI 15846
type: UnificationXref
id: CHEBI:15846
db: ChEBI

Reference/BioCyc ADP
type: UnificationXref
id: ADP
db: BioCyc

Sedoheptulose 1,7-bisphosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Sedoheptulose 1,7-bisphosphate

Reference/UniProt Q9LF61
type: UnificationXref
id: Q9LF61
db: UniProt

Reaction212712
type: BiochemicalReaction
participant stoichiometry: Compound/PW C108844 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108843 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Chloroplast/Stoichiometry/1.0
right: 1,3-Bisphosphoglycerate
right: Adenosine diphosphate
spontaneous: false
left: Adenosine triphosphate
left: Glycerate-3-Phosphate
name: Adenosine triphosphate + Glycerate-3-Phosphate → 1,3-Bisphosphoglycerate + Adenosine diphosphate
conversion direction: LEFT_TO_RIGHT

Reference/CAS 53-59-8
type: UnificationXref
id: 53-59-8
db: CAS

4.1.2.13
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000833 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C042631 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000869 Chloroplast/Stoichiometry/1.0
right: Fructose 1,6-bisphosphate
spontaneous: false
EC number: 4.1.2.13
left: Glycerone phosphate
left: D-Glyceraldehyde 3-phosphate
name: D-Glyceraldehyde 3-phosphate + Glycerone phosphate → Fructose 1,6-bisphosphate
conversion direction: LEFT_TO_RIGHT

Reaction212715
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000079 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000833 Cytoplasm/Stoichiometry/1.0
right: Phosphate
right: Fructose 6-phosphate
spontaneous: false
left: Fructose 1,6-bisphosphate
left: Water
name: Fructose 1,6-bisphosphate + Water → Fructose 6-phosphate + Phosphate
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 1038
type: UnificationXref
id: 1038
db: PubChem-compound

Malate
type: SmallMolecule
cellular location: Mitochondrion
entity reference: Malate

D-ribulose-1,5-bisphosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: D-ribulose-1,5-bisphosphate
name: SubPathwayInput

Reference/GENE ONTOLOGY GO 0005829
type: UnificationXref
id: GO:0005829
db: GENE ONTOLOGY

Fructose 1,6-bisphosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Fructose 1,6-bisphosphate

Malate dehydrogenase, cytoplasmic
type: Protein
cellular location: Cytoplasm
entity reference: Malate dehydrogenase, cytoplasmic

Reference/ChemSpider 274
type: UnificationXref
id: 274
db: ChemSpider

Hydrogen Ion
type: SmallMolecule
cellular location: Mitochondrion
entity reference: Hydrogen Ion

2.2.1.1
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000079 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000691 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001019 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000869 Chloroplast/Stoichiometry/1.0
right: Xylulose 5-phosphate
right: D-Erythrose 4-phosphate
spontaneous: false
EC number: 2.2.1.1
left: Fructose 6-phosphate
left: D-Glyceraldehyde 3-phosphate
name: D-Glyceraldehyde 3-phosphate + Fructose 6-phosphate → D-Erythrose 4-phosphate + Xylulose 5-phosphate
conversion direction: LEFT_TO_RIGHT

Reference/ChEBI CHEBI 16905
type: UnificationXref
id: CHEBI:16905
db: ChEBI

Reaction212718
type: BiochemicalReaction
participant stoichiometry: Compound/PW C042631 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000869 Chloroplast/Stoichiometry/1.0
right: Glycerone phosphate
spontaneous: false
left: D-Glyceraldehyde 3-phosphate
name: D-Glyceraldehyde 3-phosphate → Glycerone phosphate
conversion direction: LEFT_TO_RIGHT

Reaction212719
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001019 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C042631 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C041034 Chloroplast/Stoichiometry/1.0
right: Sedoheptulose 1,7-bisphosphate
spontaneous: false
left: Glycerone phosphate
left: D-Erythrose 4-phosphate
name: D-Erythrose 4-phosphate + Glycerone phosphate → Sedoheptulose 1,7-bisphosphate
conversion direction: LEFT_TO_RIGHT

Phosphoenolpyruvate
type: SmallMoleculeReference
chemical formula: C3H5O6P
molecular weight: 167.98238
structure: ChemicalStructure/PW C108866

Oxaloacetate
type: SmallMoleculeReference
chemical formula: C4H4O5
molecular weight: 132.00587
structure: ChemicalStructure/PW C108867

Malate
type: SmallMoleculeReference
chemical formula: C4H6O5
molecular weight: 134.02153
structure: ChemicalStructure/PW C108868

Reference/ChEBI CHEBI 16908
type: UnificationXref
id: CHEBI:16908
db: ChEBI

Reaction212721
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000691 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040759 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001191 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000869 Chloroplast/Stoichiometry/1.0
right: Xylulose 5-phosphate
right: D-Ribose 5-phosphate
spontaneous: false
left: D-Glyceraldehyde 3-phosphate
left: D-sedoheptulose 7-phosphate
name: D-Glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate → D-Ribose 5-phosphate + Xylulose 5-phosphate
conversion direction: LEFT_TO_RIGHT

Reaction212723
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108843 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C041031 Chloroplast/Stoichiometry/1.0
right: Glycerate-3-Phosphate
spontaneous: false
left: Water
left: Carbon dioxide
left: D-ribulose-1,5-bisphosphate
name: Carbon dioxide + D-ribulose-1,5-bisphosphate + Water → Glycerate-3-Phosphate
conversion direction: LEFT_TO_RIGHT

Phosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00009
xref: Reference/PubChem-compound 1061
xref: Reference/CAS 14265-44-2
xref: Reference/HMDB HMDB0001429
xref: Reference/BioCyc CPD-8587
xref: Reference/ChEBI CHEBI 18367
xref: Reference/ChemSpider 1032
chemical formula: H3O4P
molecular weight: 97.9769
structure: ChemicalStructure/PW C001104

D-sedoheptulose 7-phosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 57483
xref: Reference/KEGG Compound C05382
xref: Reference/HMDB HMDB0062754
chemical formula: C7H15O10P
molecular weight: 290.04028
structure: ChemicalStructure/PW C040759

pyruvate
type: SmallMoleculeReference
chemical formula: C3H4O3
molecular weight: 88.016045
structure: ChemicalStructure/PW C108870

2-Oxoglutarate
type: SmallMoleculeReference
chemical formula: C5H6O5
molecular weight: 146.02153
structure: ChemicalStructure/PW C108873

NADPH
type: SmallMoleculeReference
xref: Reference/CAS 53-57-6
xref: Reference/HMDB HMDB0000221
xref: Reference/PubChem-compound 22833512
xref: Reference/BioCyc NADPH
xref: Reference/ChemSpider 17215925
xref: Reference/KEGG Compound C00005
xref: Reference/ChEBI CHEBI 16474
chemical formula: C21H30N7O17P3
molecular weight: 745.0911
structure: ChemicalStructure/PW C000146

aspartate
type: SmallMoleculeReference
chemical formula: C4H7NO4
molecular weight: 133.0375
structure: ChemicalStructure/PW C108874

Reference/ChEBI CHEBI 15946
type: UnificationXref
id: CHEBI:15946
db: ChEBI

L-glutamate
type: SmallMoleculeReference
chemical formula: C5H9NO4
molecular weight: 147.05316
structure: ChemicalStructure/PW C108875

NADP
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00006
xref: Reference/CAS 53-59-8
xref: Reference/BioCyc NAD(P)
xref: Reference/HMDB HMDB0000217
xref: Reference/ChEBI CHEBI 18009
xref: Reference/PubChem-compound 5886
xref: Reference/ChemSpider 5675
chemical formula: C21H28N7O17P3
molecular weight: 743.07544
structure: ChemicalStructure/PW C000143

Mitochondrion
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005739

Compound/PW C108867 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxaloacetate
stoichiometric coefficient: 1.0

Reference/BioCyc NADPH
type: UnificationXref
id: NADPH
db: BioCyc

Compound/PW C040034 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Compound/PW C001034 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine diphosphate
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16977
type: UnificationXref
id: CHEBI:16977
db: ChEBI

Carbon dioxide
type: SmallMolecule
cellular location: Chloroplast
entity reference: Carbon dioxide

Reference/UniProt Q9C8T3
type: UnificationXref
id: Q9C8T3
db: UniProt

Xylulose 5-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Xylulose 5-phosphate

Reference/CAS 58-68-4
type: UnificationXref
id: 58-68-4
db: CAS

Reference/UniProt P25856
type: UnificationXref
id: P25856
db: UniProt

ChemicalStructure/PW C001104
type: ChemicalStructure
structure format: SMILES
structure data: OP(O)(O)=O

3.1.3.37
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C041034 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040759 Chloroplast/Stoichiometry/1.0
right: Phosphate
right: D-sedoheptulose 7-phosphate
spontaneous: false
EC number: 3.1.3.37
left: Water
left: Sedoheptulose 1,7-bisphosphate
name: Sedoheptulose 1,7-bisphosphate + Water → D-sedoheptulose 7-phosphate + Phosphate
conversion direction: LEFT_TO_RIGHT

Reference/HMDB HMDB0001548
type: UnificationXref
id: HMDB0001548
db: HMDB

Reference/HMDB HMDB0000217
type: UnificationXref
id: HMDB0000217
db: HMDB

Reference/CAS 124-38-9
type: UnificationXref
id: 124-38-9
db: CAS

Fructose 6-phosphate
type: SmallMoleculeReference
xref: Reference/CAS 643-13-0
xref: Reference/HMDB HMDB0000124
xref: Reference/KEGG Compound C00085
xref: Reference/ChEBI CHEBI 15946
xref: Reference/BioCyc FRUCTOSE-6P
xref: Reference/PubChem-compound 69507
xref: Reference/ChemSpider 62713
chemical formula: C6H13O9P
molecular weight: 260.02972
structure: ChemicalStructure/PW C000079

Reference/UniProt Q9MAH0
type: UnificationXref
id: Q9MAH0
db: UniProt

Triosephosphate isomerase
type: Complex
component stoichiometry: Protein/9661 Chloroplast/Stoichiometry/2.0
cellular location: Chloroplast
component: Triosephosphate isomerase, cytosolic

fructose-bisphosphate aldolase (chloroplastic)
type: Protein
cellular location: Chloroplast
entity reference: fructose-bisphosphate aldolase (chloroplastic)

Phosphoenolpyruvate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Phosphoenolpyruvate
name: SubPathwayInput

Compound/PW C108866 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphoenolpyruvate
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0001429
type: UnificationXref
id: HMDB0001429
db: HMDB

Reference/UniProt F4I7I0
type: UnificationXref
id: F4I7I0
db: UniProt

ChemicalStructure/PW C000143
type: ChemicalStructure
structure format: SMILES

Reference/HMDB HMDB0000221
type: UnificationXref
id: HMDB0000221
db: HMDB

Compound/PW C040034 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

SubPathwayInteraction112760
type: Interaction
name: SubPathwayReaction
name: SubPathway112760Reaction
participant: Glycerate-3-Phosphate
participant: D-ribulose-1,5-bisphosphate

SubPathwayInteraction112763
type: Interaction
name: SubPathway112763Reaction
name: SubPathwayReaction
participant: Phosphoenolpyruvate
participant: Starch

ChemicalStructure/PW C000146
type: ChemicalStructure
structure format: SMILES

Compound/PW C000479 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Ribulose 5-phosphate
stoichiometric coefficient: 1.0

Reference/KEGG Compound C05382
type: UnificationXref
id: C05382
db: KEGG Compound

Reference/BioCyc GLT
type: UnificationXref
id: GLT
db: BioCyc

Reference/PubChem-compound 69507
type: UnificationXref
id: 69507
db: PubChem-compound

Reference/CAS 53-57-6
type: UnificationXref
id: 53-57-6
db: CAS

Reference/ChEBI CHEBI 16710
type: UnificationXref
id: CHEBI:16710
db: ChEBI

ChemicalStructure/PW C001316
type: ChemicalStructure
structure format: SMILES
structure data: O=C=O

2-Oxoglutarate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 2-Oxoglutarate

ChemicalStructure/PW C000105
type: ChemicalStructure
structure format: SMILES
structure data: C[C@H](N)C(O)=O

D-Erythrose 4-phosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 48153
xref: Reference/HMDB HMDB0001321
xref: Reference/CAS 585-18-2
xref: Reference/BioCyc ERYTHROSE-4P
xref: Reference/PubChem-compound 122357
xref: Reference/ChemSpider 109096
xref: Reference/KEGG Compound C00279
chemical formula: C4H9O7P
molecular weight: 200.00859
structure: ChemicalStructure/PW C001019

Reference/PubChem-compound 5950
type: UnificationXref
id: 5950
db: PubChem-compound

Compound/PW C108868 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Malate
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0001321
type: UnificationXref
id: HMDB0001321
db: HMDB

Pyrophosphate
type: SmallMoleculeReference
xref: Reference/PubChem-compound 644102
xref: Reference/BioCyc PPI
xref: Reference/ChemSpider 559142
xref: Reference/ChEBI CHEBI 18361
xref: Reference/HMDB HMDB0000250
xref: Reference/CAS 14000-31-8
xref: Reference/KEGG Compound C00013
chemical formula: H4O7P2
molecular weight: 177.94322
structure: ChemicalStructure/PW C000170

NADH
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001487
xref: Reference/CAS 58-68-4
xref: Reference/PubChem-compound 439153
xref: Reference/BioCyc NADH
xref: Reference/ChemSpider 388299
xref: Reference/KEGG Compound C00004
xref: Reference/ChEBI CHEBI 16908
chemical formula: C21H29N7O14P2
molecular weight: 665.12476
structure: ChemicalStructure/PW C001144

Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Reference/PubChem-compound 5957
type: UnificationXref
id: 5957
db: PubChem-compound

Reference/SMPDB SMP0122622
type: UnificationXref
id: SMP0122622
db: SMPDB

ChemicalStructure/PW C108844
type: ChemicalStructure
structure format: SMILES
structure data: O[C@H](COP(O)(O)=O)C(=O)OP(O)(O)=O

ChemicalStructure/PW C108843
type: ChemicalStructure
structure format: SMILES
structure data: O[C@H](COP(O)(O)=O)C(O)=O

Reference/CAS 60802-29-1
type: UnificationXref
id: 60802-29-1
db: CAS

Reference/BioCyc ERYTHROSE-4P
type: UnificationXref
id: ERYTHROSE-4P
db: BioCyc

D-Glyceraldehyde 3-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: D-Glyceraldehyde 3-phosphate

ChemicalStructure/PW C000479
type: ChemicalStructure
structure format: SMILES
structure data: OCC(=O)[C@H](O)[C@H](O)COP(O)(O)=O

Compound/PW C041034 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Sedoheptulose 1,7-bisphosphate
stoichiometric coefficient: 1.0

Reference/UniProt Q9C5M0
type: UnificationXref
id: Q9C5M0
db: UniProt

Compound/PW C001144 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADH
stoichiometric coefficient: 1.0

Reference/GENE ONTOLOGY GO 0005739
type: UnificationXref
id: GO:0005739
db: GENE ONTOLOGY

Reference/HMDB HMDB0000124
type: UnificationXref
id: HMDB0000124
db: HMDB

Adenosine diphosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00008
xref: Reference/PubChem-compound 6022
xref: Reference/ChemSpider 5800
xref: Reference/CAS 58-64-0
xref: Reference/BioCyc ADP
xref: Reference/ChEBI CHEBI 16761
xref: Reference/HMDB HMDB0001341
chemical formula: C10H15N5O10P2
molecular weight: 427.02942
structure: ChemicalStructure/PW C001034

Water
type: SmallMolecule
cellular location: Chloroplast
entity reference: Water

Reference/GENE ONTOLOGY GO 0005737
type: UnificationXref
id: GO:0005737
db: GENE ONTOLOGY

Reference/CAS 4151-19-3
type: UnificationXref
id: 4151-19-3
db: CAS

ReactionCatalysis37840
type: Catalysis
controller: phosphoribulokinase
controlled: 2.7.1.19
control type: ACTIVATION

TransportCatalysis1964
type: Catalysis
controller: Unknown
controlled: Transport10788
control type: ACTIVATION

Compound/PW C000143 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADP
stoichiometric coefficient: 1.0

Compound/PW C000146 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADPH
stoichiometric coefficient: 1.0

Reference/UniProt P10795
type: UnificationXref
id: P10795
db: UniProt

NADH
type: SmallMolecule
cellular location: Cytoplasm
entity reference: NADH

Reference/BioCyc CPD-8587
type: UnificationXref
id: CPD-8587
db: BioCyc

ChemicalStructure/PW C000721
type: ChemicalStructure
structure format: SMILES

Alanine aminotransferase 1, mitochondrial
type: Protein
cellular location: Mitochondrion
entity reference: Alanine aminotransferase 1, mitochondrial

Compound/PW C108867 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxaloacetate
stoichiometric coefficient: 1.0

Reference/ChemSpider 5682
type: UnificationXref
id: 5682
db: ChemSpider

Compound/PW C000691 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Xylulose 5-phosphate
stoichiometric coefficient: 1.0

phosphoenolpyruvate/phosphate translocator 1
type: Protein
entity reference: phosphoenolpyruvate/phosphate translocator 1

Reference/UniProt F4IW47
type: UnificationXref
id: F4IW47
db: UniProt

Reference/ChEBI CHEBI 52742
type: UnificationXref
id: CHEBI:52742
db: ChEBI

D-Ribulose 5-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: D-Ribulose 5-phosphate

Compound/PW C001104 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphate
stoichiometric coefficient: 1.0

ReactionCatalysis37834
type: Catalysis
controller: ribose-5-phosphate isomerase 1
controlled: Reaction47693
control type: ACTIVATION

Reference/CAS 14000-31-8
type: UnificationXref
id: 14000-31-8
db: CAS

Glycerone phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Glycerone phosphate
name: SubPathwayInput

Glycerone phosphate
type: SmallMoleculeReference
chemical formula: C3H5Li2O6P
molecular weight: 182.01439
structure: ChemicalStructure/PW C042631

Phosphoenolpyruvate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Phosphoenolpyruvate

ReactionCatalysis37830
type: Catalysis
controller: ribulose-phosphate 3-epimerase
controlled: 5.1.3.1
control type: ACTIVATION

Reference/ChemSpider 5675
type: UnificationXref
id: 5675
db: ChemSpider

Compound/PW C108870 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: pyruvate
stoichiometric coefficient: 1.0

NADP-dependent malic enzyme 4, chloroplastic
type: ProteinReference
xref: Reference/UniProt Q9CA83
organism: Arabidopsis thaliana

Compound/PW C001420 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Reference/UniProt P46646
type: UnificationXref
id: P46646
db: UniProt

Carbon dioxide
type: SmallMolecule
cellular location: Mitochondrion
entity reference: Carbon dioxide

Phosphoenolpyruvate carboxylase 1
type: ProteinReference
xref: Reference/UniProt Q9MAH0
organism: Arabidopsis thaliana

Reference/UniProt Q9LXV3
type: UnificationXref
id: Q9LXV3
db: UniProt

Cytoplasm
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005737

Compound/PW C042631 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glycerone phosphate
stoichiometric coefficient: 1.0

Starch
type: SmallMolecule
cellular location: Chloroplast
entity reference: Starch
name: SubPathwayOutput

Reference/ChEBI CHEBI 15422
type: UnificationXref
id: CHEBI:15422
db: ChEBI

Arabidopsis thaliana
type: BioSource
xref: Reference/TAXONOMY 3702

Reference/ChemSpider 388299
type: UnificationXref
id: 388299
db: ChemSpider

5.1.3.1
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000479 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000691 Cytoplasm/Stoichiometry/1.0
right: Xylulose 5-phosphate
spontaneous: false
EC number: 5.1.3.1
left: D-Ribulose 5-phosphate
name: D-Ribulose 5-phosphate ↔ Xylulose 5-phosphate
conversion direction: REVERSIBLE

Reference/ChEBI CHEBI 48153
type: UnificationXref
id: CHEBI:48153
db: ChEBI

Hydrogen Ion
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Hydrogen Ion

Aspartate aminotransferase, cytoplasmic isozyme 2
type: ProteinReference
xref: Reference/UniProt P46646
organism: Arabidopsis thaliana

NAD-dependent malic enzyme 1, mitochondrial
type: ProteinReference
xref: Reference/UniProt Q9SIU0
organism: Arabidopsis thaliana

Alanine aminotransferase 1, mitochondrial
type: ProteinReference
xref: Reference/UniProt F4I7I0
organism: Arabidopsis thaliana

Pyruvate, phosphate dikinase 1, chloroplastic
type: ProteinReference
xref: Reference/UniProt O23404
organism: Arabidopsis thaliana

Malate dehydrogenase [NADP], chloroplastic
type: ProteinReference
xref: Reference/UniProt Q8H1E2
organism: Arabidopsis thaliana

L-Glutamic acid
type: SmallMoleculeReference
xref: Reference/PubChem-compound 33032
xref: Reference/ChEBI CHEBI 16015
xref: Reference/ChemSpider 30572
xref: Reference/HMDB HMDB0000148
xref: Reference/CAS 56-86-0
xref: Reference/BioCyc GLT
xref: Reference/KEGG Compound C00025
chemical formula: C5H9NO4
molecular weight: 147.05316
structure: ChemicalStructure/PW C000095

Reference/BioCyc FRUCTOSE-16-DIPHOSPHATE
type: UnificationXref
id: FRUCTOSE-16-DIPHOSPHATE
db: BioCyc

Reference/PubChem-compound 33032
type: UnificationXref
id: 33032
db: PubChem-compound

Reaction47693
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001191 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000479 Cytoplasm/Stoichiometry/1.0
right: D-Ribulose 5-phosphate
spontaneous: false
left: D-Ribose 5-phosphate
name: D-Ribose 5-phosphate ↔ D-Ribulose 5-phosphate
conversion direction: REVERSIBLE

Reference/ChEBI CHEBI 16526
type: UnificationXref
id: CHEBI:16526
db: ChEBI

Compound/PW C108868 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: Malate
stoichiometric coefficient: 1.0

ChemicalStructure/PW C000833
type: ChemicalStructure
structure format: SMILES

Compound/PW C040759 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-sedoheptulose 7-phosphate
stoichiometric coefficient: 1.0

2.7.1.19
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000479 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C041031 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Chloroplast/Stoichiometry/1.0
right: Hydrogen Ion
right: Adenosine diphosphate
right: D-ribulose-1,5-bisphosphate
spontaneous: false
EC number: 2.7.1.19
left: D-Ribulose 5-phosphate
left: Adenosine triphosphate
name: Adenosine triphosphate + D-Ribulose 5-phosphate ↔ Adenosine diphosphate + D-ribulose-1,5-bisphosphate + Hydrogen Ion
conversion direction: REVERSIBLE

Compound/PW C041031 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-ribulose-1,5-bisphosphate
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16761
type: UnificationXref
id: CHEBI:16761
db: ChEBI

Mitochondrial pyruvate carrier 1
type: Protein
entity reference: Mitochondrial pyruvate carrier 1

Sodium/pyruvate cotransporter BASS2, chloroplastic
type: Protein
entity reference: Sodium/pyruvate cotransporter BASS2, chloroplastic

Mitochondrial dicarboxylate/tricarboxylate transporter DTC
type: Protein
entity reference: Mitochondrial dicarboxylate/tricarboxylate transporter DTC

Dicarboxylate transporter 1, chloroplastic
type: Protein
entity reference: Dicarboxylate transporter 1, chloroplastic

Transketolase-2, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Transketolase-2, chloroplastic

Phosphoenolpyruvate carboxylase 1
type: Protein
cellular location: Cytoplasm
entity reference: Phosphoenolpyruvate carboxylase 1

D-Ribose 5-phosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00117
xref: Reference/ChEBI CHEBI 52742
xref: Reference/ChemSpider 388313
xref: Reference/HMDB HMDB0001548
xref: Reference/BioCyc RIBOSE-5P
xref: Reference/PubChem-compound 439167
xref: Reference/CAS 4300-28-1
chemical formula: C5H11O8P
molecular weight: 230.01915
structure: ChemicalStructure/PW C001191

ReactionCatalysis37849
type: Catalysis
controller: sedoheptulose-1,7-bisphosphatase
controlled: 3.1.3.37
control type: ACTIVATION

NADH
type: SmallMolecule
cellular location: Mitochondrion
entity reference: NADH

Oxaloacetate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Oxaloacetate

Fructose 6-phosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Fructose 6-phosphate

Compound/PW C001034 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine diphosphate
stoichiometric coefficient: 1.0

Compound/PW C000869 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-Glyceraldehyde 3-phosphate
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16332
type: UnificationXref
id: CHEBI:16332
db: ChEBI

Reference/PubChem-compound 5893
type: UnificationXref
id: 5893
db: PubChem-compound

Xylulose 5-phosphate/phosphate translocator, chloroplastic
type: Protein
entity reference: Xylulose 5-phosphate/phosphate translocator, chloroplastic

Reference/KEGG Compound C00197
type: UnificationXref
id: C00197
db: KEGG Compound

Reference/ChEBI CHEBI 15377
type: UnificationXref
id: CHEBI:15377
db: ChEBI

phosphoenolpyruvate/phosphate translocator 1
type: ProteinReference
xref: Reference/UniProt Q8RXN3

Chloroplast
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0009507

Reference/ChEBI CHEBI 15378
type: UnificationXref
id: CHEBI:15378
db: ChEBI

ChemicalStructure/PW C040034
type: ChemicalStructure
structure format: SMILES
structure data: [H+]

Xylulose 5-phosphate
type: SmallMolecule
cellular location: Cytosol
entity reference: Xylulose 5-phosphate

ChemicalStructure/PW C000414
type: ChemicalStructure
structure format: SMILES

Reference/PubChem-compound 5886
type: UnificationXref
id: 5886
db: PubChem-compound

Reference/HMDB HMDB0000618
type: UnificationXref
id: HMDB0000618
db: HMDB

Phosphate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Phosphate

Compound/PW C000414 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine triphosphate
stoichiometric coefficient: 1.0

NAD-dependent malic enzyme 1, mitochondrial
type: Protein
cellular location: Mitochondrion
entity reference: NAD-dependent malic enzyme 1, mitochondrial

Reference/PubChem-compound 280
type: UnificationXref
id: 280
db: PubChem-compound

Compound/PW C001316 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

chloroplastic glyceraldehyde 3-phosphate dehydrogenase
type: Protein
cellular location: Chloroplast
entity reference: chloroplastic glyceraldehyde 3-phosphate dehydrogenase

L-Alanine
type: SmallMolecule
cellular location: Mitochondrion
entity reference: L-Alanine

Compound/PW C108870 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: pyruvate
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0000868
type: UnificationXref
id: HMDB0000868
db: HMDB

TransportCatalysis1948
type: Catalysis
controller: Unknown
controlled: Transport10771
control type: ACTIVATION

TransportCatalysis1947
type: Catalysis
controller: Xylulose 5-phosphate/phosphate translocator, chloroplastic
controlled: Transport10770
control type: ACTIVATION

ChemicalStructure/PW C000869
type: ChemicalStructure
structure format: SMILES
structure data: OC(COP(O)(O)=O)C=O

Adenosine diphosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Adenosine diphosphate

Malate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Malate

Reference/BioCyc GAP
type: UnificationXref
id: GAP
db: BioCyc

TransportCatalysis1951
type: Catalysis
controller: Xylulose 5-phosphate/phosphate translocator, chloroplastic
controlled: Transport10775
control type: ACTIVATION

Reference/PubChem-compound 1061
type: UnificationXref
id: 1061
db: PubChem-compound

TransportCatalysis1953
type: Catalysis
controller: phosphoenolpyruvate/phosphate translocator 1
controlled: Transport10777
control type: ACTIVATION

TransportCatalysis1952
type: Catalysis
controller: Dicarboxylate transporter 1, chloroplastic
controlled: Transport10776
control type: ACTIVATION

Compound/PW C108874 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: aspartate
stoichiometric coefficient: 1.0

Reference/KEGG Compound C00661
type: UnificationXref
id: C00661
db: KEGG Compound

TransportCatalysis1959
type: Catalysis
controller: Unknown
controlled: Transport10783
control type: ACTIVATION

Reference/HMDB HMDB0001967
type: UnificationXref
id: HMDB0001967
db: HMDB

TransportCatalysis1958
type: Catalysis
controller: Mitochondrial pyruvate carrier 1
controlled: Transport10782
control type: ACTIVATION

Reference/ChemSpider 109096
type: UnificationXref
id: 109096
db: ChemSpider

Ribulose bisphosphate carboxylase small chain 1A, chloroplastic
type: ProteinReference
xref: Reference/UniProt P10795
organism: Arabidopsis thaliana

TransportCatalysis1955
type: Catalysis
controller: Mitochondrial dicarboxylate/tricarboxylate transporter DTC
controlled: Transport10779
control type: ACTIVATION

TransportCatalysis1954
type: Catalysis
controller: Dicarboxylate transporter 1, chloroplastic
controlled: Transport10778
control type: ACTIVATION

TransportCatalysis1956
type: Catalysis
controller: Sodium/pyruvate cotransporter BASS2, chloroplastic
controlled: Transport10780
control type: ACTIVATION

Phosphoglycerate kinase 2, chloroplastic
type: ProteinReference
xref: Reference/UniProt P50318
organism: Arabidopsis thaliana

Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic
type: ProteinReference
xref: Reference/UniProt Q9FX54
organism: Arabidopsis thaliana

Transketolase-2, chloroplastic
type: ProteinReference
xref: Reference/UniProt F4IW47
organism: Arabidopsis thaliana

Unknown
type: Protein
cellular location: Cytoplasm
entity reference: Unknown

Compound/PW C000721 Mitochondrion/Stoichiometry/1.0
type: Stoichiometry
physical entity: NAD
stoichiometric coefficient: 1.0

Reference/CAS 4300-28-1
type: UnificationXref
id: 4300-28-1
db: CAS

pyruvate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: pyruvate

ChemicalStructure/PW C041034
type: ChemicalStructure
structure format: SMILES

ChemicalStructure/PW C041031
type: ChemicalStructure
structure format: SMILES