Tetrahydropteroyltri-L-glutamate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Tetrahydropteroyltri-L-glutamate

Compound/PW C040968 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: an unknown oxidized electron acceptor
stoichiometric coefficient: 1.0

Reference/ChemSpider 17215925
type: UnificationXref
id: 17215925
db: ChemSpider

2-Aminoacrylate
type: SmallMolecule
cellular location: Chloroplast
entity reference: 2-Aminoacrylate

Reference/TAXONOMY 3702
type: UnificationXref
id: 3702
db: TAXONOMY

Reference/KEGG Compound C01528
type: UnificationXref
id: C01528
db: KEGG Compound

Reference/ChemSpider 937
type: UnificationXref
id: 937
db: ChemSpider

an unknown oxidized electron acceptor
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15339

an unknown reduced electron acceptor
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 17499

Reference/ChEBI CHEBI 16134
type: UnificationXref
id: CHEBI:16134
db: ChEBI

Reference/KEGG Compound C05688
type: UnificationXref
id: C05688
db: KEGG Compound

Compound/PW C000035 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Ammonia
stoichiometric coefficient: 1.0

Reference/ChemSpider 57
type: UnificationXref
id: 57
db: ChemSpider

ChemicalStructure/PW C001420
type: ChemicalStructure
structure format: SMILES
structure data: O

Compound/PW C007732 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: 5-Methyltetrahydropteroyltri-L-glutamate
stoichiometric coefficient: 1.0

Ammonia
type: SmallMoleculeReference
xref: Reference/BioCyc AMMONIA
xref: Reference/CAS 7664-41-7
xref: Reference/HMDB HMDB0000051
xref: Reference/PubChem-compound 222
xref: Reference/KEGG Compound C00014
xref: Reference/ChEBI CHEBI 16134
xref: Reference/ChemSpider 217
chemical formula: H3N
molecular weight: 17.026548
structure: ChemicalStructure/PW C000035

Compound/PW C000143 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADP
stoichiometric coefficient: 1.0

Adenosine monophosphate
type: SmallMoleculeReference
xref: Reference/CAS 61-19-8
xref: Reference/ChemSpider 5858
xref: Reference/HMDB HMDB0000045
xref: Reference/BioCyc AMP
xref: Reference/ChEBI CHEBI 16027
xref: Reference/PubChem-compound 6083
xref: Reference/KEGG Compound C00020
chemical formula: C10H14N5O7P
molecular weight: 347.06308
structure: ChemicalStructure/PW C000032

Compound/PW C044570 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: methylselenol
stoichiometric coefficient: 1.0

Compound/PW C002727 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Selenocystathionine
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0001185
type: UnificationXref
id: HMDB0001185
db: HMDB

Reference/CAS 14124-67-5
type: UnificationXref
id: 14124-67-5
db: CAS

Reference/PubChem-compound 5284
type: UnificationXref
id: 5284
db: PubChem-compound

Compound/PW C109050 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Aminobut-2-enoate
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16027
type: UnificationXref
id: CHEBI:16027
db: ChEBI

Compound/PW C006752 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen selenide
stoichiometric coefficient: 1.0

Selenocystathionine
type: SmallMolecule
cellular location: Chloroplast
entity reference: Selenocystathionine

Reference/HMDB HMDB0000538
type: UnificationXref
id: HMDB0000538
db: HMDB

Pyruvic acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: Pyruvic acid

Reference/BioCyc ATP
type: UnificationXref
id: ATP
db: BioCyc

Succinic acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: Succinic acid

Reference/KEGG Compound C04489
type: UnificationXref
id: C04489
db: KEGG Compound

Reference/KEGG Compound C05699
type: UnificationXref
id: C05699
db: KEGG Compound

Reference/KEGG Compound C05335
type: UnificationXref
id: C05335
db: KEGG Compound

Reference/KEGG Compound C05698
type: UnificationXref
id: C05698
db: KEGG Compound

Unknown
type: Protein
entity reference: Unknown

Water
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Water

Compound/PW C002066 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Selenohomocysteine
stoichiometric coefficient: 1.0

Thioredoxin reductase 2
type: Protein
cellular location: Cytoplasm
entity reference: Thioredoxin reductase 2

Pyruvic acid
type: SmallMoleculeReference
xref: Reference/PubChem-compound 1060
xref: Reference/HMDB HMDB0000243
xref: Reference/CAS 127-17-3
xref: Reference/BioCyc PYRUVATE
xref: Reference/KEGG Compound C00022
xref: Reference/ChEBI CHEBI 32816
xref: Reference/ChemSpider 1031
chemical formula: C3H4O3
molecular weight: 88.016045
structure: ChemicalStructure/PW C000164

Reference/PubChem-compound 58
type: UnificationXref
id: 58
db: PubChem-compound

S-Adenosylmethionine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 24762165
xref: Reference/KEGG Compound C00019
xref: Reference/ChemSpider 31983
xref: Reference/ChEBI CHEBI 15414
xref: Reference/CAS 485-80-3
xref: Reference/BioCyc S-ADENOSYLMETHIONINE
xref: Reference/HMDB HMDB0001185
chemical formula: C15H23N6O5S
molecular weight: 399.14505
structure: ChemicalStructure/PW C000921

Reference/CAS 53-59-8
type: UnificationXref
id: 53-59-8
db: CAS

Compound/PW C006752 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen selenide
stoichiometric coefficient: 1.0

Reference/UniProt Q9LTB2
type: UnificationXref
id: Q9LTB2
db: UniProt

ChemicalStructure/PW C002727
type: ChemicalStructure
structure format: SMILES
structure data: NC(CC[Se]CC(N)C(O)=O)C(O)=O

Reference/ChemSpider 5742
type: UnificationXref
id: 5742
db: ChemSpider

Reference/ChEBI CHEBI 9100
type: UnificationXref
id: CHEBI:9100
db: ChEBI

Reference/PubChem-compound 1038
type: UnificationXref
id: 1038
db: PubChem-compound

Compound/PW C000414 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine triphosphate
stoichiometric coefficient: 1.0

Compound/PW C000164 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Pyruvic acid
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16474
type: UnificationXref
id: CHEBI:16474
db: ChEBI

Reference/ChemSpider 88693
type: UnificationXref
id: 88693
db: ChemSpider

Reference/KEGG Compound C04144
type: UnificationXref
id: C04144
db: KEGG Compound

Reference/GENE ONTOLOGY GO 0009507
type: UnificationXref
id: GO:0009507
db: GENE ONTOLOGY

Reference/HMDB HMDB0004119
type: UnificationXref
id: HMDB0004119
db: HMDB

Reference/KEGG Compound C03172
type: UnificationXref
id: C03172
db: KEGG Compound

Compound/PW C002019 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Selenomethionine
stoichiometric coefficient: 1.0

Methionine S-methyltransferase
type: Protein
cellular location: Cytoplasm
entity reference: Methionine S-methyltransferase

Reference/HMDB HMDB0060488
type: UnificationXref
id: HMDB0060488
db: HMDB

Reference/UniProt P53780
type: UnificationXref
id: P53780
db: UniProt

Reference/HMDB HMDB0060489
type: UnificationXref
id: HMDB0060489
db: HMDB

Reference/ChemSpider 5858
type: UnificationXref
id: 5858
db: ChemSpider

Reference/UniProt Q9SGU9
type: UnificationXref
id: Q9SGU9
db: UniProt

Reference/BioCyc ADENOSYL-HOMO-CYS
type: UnificationXref
id: ADENOSYL-HOMO-CYS
db: BioCyc

Reference/ChemSpider 5735
type: UnificationXref
id: 5735
db: ChemSpider

Reference/KEGG Compound C00109
type: UnificationXref
id: C00109
db: KEGG Compound

Reference/CAS 485-80-3
type: UnificationXref
id: 485-80-3
db: CAS

Compound/PW C000035 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Ammonia
stoichiometric coefficient: 1.0

Reference/ChemSpider 1010
type: UnificationXref
id: 1010
db: ChemSpider

Reference/PubChem-compound 1023
type: UnificationXref
id: 1023
db: PubChem-compound

Selenocysteine
type: SmallMolecule
cellular location: Chloroplast
entity reference: Selenocysteine

Compound/PW C000921 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: S-Adenosylmethionine
stoichiometric coefficient: 1.0

Reference/BioCyc SELENOMETHIONINE
type: UnificationXref
id: SELENOMETHIONINE
db: BioCyc

ChemicalStructure/PW C002066
type: ChemicalStructure
structure format: SMILES
structure data: NC(CC[SeH])C(O)=O

Compound/PW C002019 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Selenomethionine
stoichiometric coefficient: 1.0

Reference/CAS 600-18-0
type: UnificationXref
id: 600-18-0
db: CAS

NADPH
type: SmallMoleculeReference
xref: Reference/CAS 53-57-6
xref: Reference/HMDB HMDB0000221
xref: Reference/PubChem-compound 22833512
xref: Reference/BioCyc NADPH
xref: Reference/ChemSpider 17215925
xref: Reference/KEGG Compound C00005
xref: Reference/ChEBI CHEBI 16474
chemical formula: C21H30N7O17P3
molecular weight: 745.0911
structure: ChemicalStructure/PW C000146

RNA/10 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Selenomethionyl-tRNA(Met)
stoichiometric coefficient: 1.0

Reference/CAS 10236-58-5
type: UnificationXref
id: 10236-58-5
db: CAS

NADP
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00006
xref: Reference/CAS 53-59-8
xref: Reference/BioCyc NAD(P)
xref: Reference/HMDB HMDB0000217
xref: Reference/ChEBI CHEBI 18009
xref: Reference/PubChem-compound 5886
xref: Reference/ChemSpider 5675
chemical formula: C21H28N7O17P3
molecular weight: 743.07544
structure: ChemicalStructure/PW C000143

Cysteine desulfurase 1, chloroplastic
type: ProteinReference
xref: Reference/UniProt Q93WX6
organism: Arabidopsis thaliana

Reference/BioCyc NADPH
type: UnificationXref
id: NADPH
db: BioCyc

Reference/KEGG Compound C17234
type: UnificationXref
id: C17234
db: KEGG Compound

Compound/PW C040034 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Adenosine monophosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Adenosine monophosphate

Reference/ChEBI CHEBI 16977
type: UnificationXref
id: CHEBI:16977
db: ChEBI

ChemicalStructure/PW C000921
type: ChemicalStructure
structure format: SMILES

Reference/CAS 979-92-0
type: UnificationXref
id: 979-92-0
db: CAS

S-Adenosylhomocysteine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: S-Adenosylhomocysteine

Selenite
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Selenite

Reference/BioCyc L-SELENOCYSTEINE
type: UnificationXref
id: L-SELENOCYSTEINE
db: BioCyc

2-Aminobut-2-enoate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C17234
xref: Reference/PubChem-compound 96023642
chemical formula: C4H7NO2
molecular weight: 101.047676
structure: ChemicalStructure/PW C109050

Reference/ChemSpider 217
type: UnificationXref
id: 217
db: ChemSpider

2-Iminobutanoate
type: SmallMoleculeReference
xref: Reference/PubChem-compound 254741368
xref: Reference/KEGG Compound C20905
chemical formula: C4H7NO2
molecular weight: 101.047676
structure: ChemicalStructure/PW C109051

Reference/BioCyc SUC
type: UnificationXref
id: SUC
db: BioCyc

S-Adenosylhomocysteine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 25246222
xref: Reference/ChemSpider 388301
xref: Reference/BioCyc ADENOSYL-HOMO-CYS
xref: Reference/CAS 979-92-0
xref: Reference/KEGG Compound C00021
xref: Reference/ChEBI CHEBI 16680
xref: Reference/HMDB HMDB0000939
chemical formula: C14H20N6O5S
molecular weight: 384.12158
structure: ChemicalStructure/PW C000749

S-Methyl-L-methionine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 6054
xref: Reference/KEGG Compound C03172
chemical formula: C6H14NO2S
molecular weight: 164.07452
structure: ChemicalStructure/PW C109056

Reference/HMDB HMDB0000217
type: UnificationXref
id: HMDB0000217
db: HMDB

Compound/PW C000146 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADPH
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0003966
type: UnificationXref
id: HMDB0003966
db: HMDB

2-Iminobutanoate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 2-Iminobutanoate

Diphosphoric acid
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 29888
xref: Reference/CAS 2466-09-3
xref: Reference/KEGG Compound C00013
xref: Reference/PubChem-compound 1023
chemical formula: H4O7P2
molecular weight: 177.94322
structure: ChemicalStructure/PW C108886

Reference/HMDB HMDB0003288
type: UnificationXref
id: HMDB0003288
db: HMDB

Compound/PW C007828 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Tetrahydropteroyltri-L-glutamate
stoichiometric coefficient: 1.0

Compound/PW C000174 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Succinic acid
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0011110
type: UnificationXref
id: HMDB0011110
db: HMDB

L-Alanine
type: SmallMolecule
cellular location: Chloroplast
entity reference: L-Alanine

Reference/KEGG Compound C00006
type: UnificationXref
id: C00006
db: KEGG Compound

Reference/ChEBI CHEBI 16503
type: UnificationXref
id: CHEBI:16503
db: ChEBI

Reference/ChEBI CHEBI 15414
type: UnificationXref
id: CHEBI:15414
db: ChEBI

ReactionCatalysis202689
type: Catalysis
controller: Methionine S-methyltransferase
controlled: 2.1.1.12
control type: ACTIVATION

Reference/PubChem-compound 16722111
type: UnificationXref
id: 16722111
db: PubChem-compound

Reference/ChEBI CHEBI 18009
type: UnificationXref
id: CHEBI:18009
db: ChEBI

Reference/PubChem-compound 16722112
type: UnificationXref
id: 16722112
db: PubChem-compound

Tetrahydropteroyltri-L-glutamate
type: SmallMoleculeReference
xref: Reference/ChemSpider 17625690
xref: Reference/KEGG Compound C04144
xref: Reference/HMDB HMDB0012290
xref: Reference/BioCyc CPD-1302
xref: Reference/PubChem-compound 16722112
xref: Reference/ChEBI CHEBI 17420
chemical formula: C29H37N9O12
molecular weight: 703.25616
structure: ChemicalStructure/PW C007828

Reference/KEGG Compound C00001
type: UnificationXref
id: C00001
db: KEGG Compound

Reference/BioCyc L-ALPHA-ALANINE
type: UnificationXref
id: L-ALPHA-ALANINE
db: BioCyc

Selenomethionine
type: SmallMoleculeReference
xref: Reference/BioCyc SELENOMETHIONINE
xref: Reference/ChemSpider 14375
xref: Reference/HMDB HMDB0003966
xref: Reference/PubChem-compound 15103
xref: Reference/CAS 1464-42-2
xref: Reference/KEGG Compound C05335
xref: Reference/ChEBI CHEBI 27585
chemical formula: C5H11NO2Se
molecular weight: 196.9955
structure: ChemicalStructure/PW C002019

Diphosphoric acid
type: SmallMolecule
cellular location: Chloroplast
entity reference: Diphosphoric acid

Reference/CAS 56-41-7
type: UnificationXref
id: 56-41-7
db: CAS

ReactionCatalysis202687
type: Catalysis
controller: Methionine gamma-lyase
controlled: 4.4.1.11
control type: ACTIVATION

Reference/KEGG Compound C00005
type: UnificationXref
id: C00005
db: KEGG Compound

an unknown oxidized electron acceptor
type: SmallMolecule
cellular location: Chloroplast
entity reference: an unknown oxidized electron acceptor

Compound/PW C109051 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Iminobutanoate
stoichiometric coefficient: 1.0

Reference/BioCyc 2-OXOBUTANOATE
type: UnificationXref
id: 2-OXOBUTANOATE
db: BioCyc

Reference/KEGG Compound C00002
type: UnificationXref
id: C00002
db: KEGG Compound

Reference/ChemSpider 1031
type: UnificationXref
id: 1031
db: ChemSpider

NADP
type: SmallMolecule
cellular location: Cytoplasm
entity reference: NADP

ChemicalStructure/PW C000143
type: ChemicalStructure
structure format: SMILES

Reference/HMDB HMDB0000221
type: UnificationXref
id: HMDB0000221
db: HMDB

ReactionCatalysis202680
type: Catalysis
controller: Methionine--tRNA ligase, chloroplastic/mitochondrial
controlled: 6.1.1.10
control type: ACTIVATION

2-Aminoacrylate
type: SmallMoleculeReference
xref: Reference/PubChem-compound 5284
xref: Reference/KEGG Compound C02218
xref: Reference/ChEBI CHEBI 17123
chemical formula: C3H5NO2
molecular weight: 87.03203
structure: ChemicalStructure/PW C109066

Cystathionine beta-lyase, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Cystathionine beta-lyase, chloroplastic

ChemicalStructure/PW C000146
type: ChemicalStructure
structure format: SMILES

Reference/CAS 7664-41-7
type: UnificationXref
id: 7664-41-7
db: CAS

2-Aminobut-2-enoate
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 2-Aminobut-2-enoate

Reference/CAS 53-57-6
type: UnificationXref
id: 53-57-6
db: CAS

Reference/KEGG Compound C00019
type: UnificationXref
id: C00019
db: KEGG Compound

Reference/ChEBI CHEBI 15741
type: UnificationXref
id: CHEBI:15741
db: ChEBI

Reference/BioCyc S-ADENOSYLMETHIONINE
type: UnificationXref
id: S-ADENOSYLMETHIONINE
db: BioCyc

ChemicalStructure/PW C000105
type: ChemicalStructure
structure format: SMILES
structure data: C[C@H](N)C(O)=O

2-Iminopropanoate
type: SmallMoleculeReference
xref: Reference/PubChem-compound 254741367
xref: Reference/KEGG Compound C20904
chemical formula: C3H5NO2
molecular weight: 87.03203
structure: ChemicalStructure/PW C109070

Reference/ChEBI CHEBI 17123
type: UnificationXref
id: CHEBI:17123
db: ChEBI

O-Succinyl-L-homoserine
type: SmallMoleculeReference
xref: Reference/KEGG Compound C01118
xref: Reference/ChEBI CHEBI 16160
xref: Reference/PubChem-compound 4349
chemical formula: C8H13NO6
molecular weight: 219.07428
structure: ChemicalStructure/PW C109071

Reference/PubChem-compound 5950
type: UnificationXref
id: 5950
db: PubChem-compound

Reference/ChEBI CHEBI 18212
type: UnificationXref
id: CHEBI:18212
db: ChEBI

Reference/PubChem-compound 222
type: UnificationXref
id: 222
db: PubChem-compound

Reference/KEGG Compound C00014
type: UnificationXref
id: C00014
db: KEGG Compound

Reference/PubChem-compound 1110
type: UnificationXref
id: 1110
db: PubChem-compound

Reference/KEGG Compound C00013
type: UnificationXref
id: C00013
db: KEGG Compound

Compound/PW C001829 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Selenocysteine
stoichiometric coefficient: 1.0

O-Succinyl-L-homoserine
type: SmallMolecule
cellular location: Chloroplast
entity reference: O-Succinyl-L-homoserine

Reference/PubChem-compound 440763
type: UnificationXref
id: 440763
db: PubChem-compound

Reference/BioCyc NAD(P)
type: UnificationXref
id: NAD(P)
db: BioCyc

Unknown
type: ProteinReference

Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Reference/PubChem-compound 5957
type: UnificationXref
id: 5957
db: PubChem-compound

Reference/PubChem-compound 25076
type: UnificationXref
id: 25076
db: PubChem-compound

Reference/HMDB HMDB0011119
type: UnificationXref
id: HMDB0011119
db: HMDB

Reference/UniProt Q9SRV5
type: UnificationXref
id: Q9SRV5
db: UniProt

Cysteine desulfurase 1, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Cysteine desulfurase 1, chloroplastic

Succinic acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000254
xref: Reference/CAS 110-15-6
xref: Reference/ChEBI CHEBI 15741
xref: Reference/KEGG Compound C00042
xref: Reference/ChemSpider 1078
xref: Reference/PubChem-compound 1110
xref: Reference/BioCyc SUC
chemical formula: C4H6O4
molecular weight: 118.02661
structure: ChemicalStructure/PW C000174

S-Methyl-L-methionine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: S-Methyl-L-methionine

Reference/ChEBI CHEBI 64685
type: UnificationXref
id: CHEBI:64685
db: ChEBI

Hydrogen Ion
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00080
xref: Reference/ChEBI CHEBI 15378
xref: Reference/HMDB HMDB0059597
xref: Reference/PubChem-compound 1038
xref: Reference/ChemSpider 1010
chemical formula: H
molecular weight: 1.007825
structure: ChemicalStructure/PW C040034

Reference/ChemSpider 1059
type: UnificationXref
id: 1059
db: ChemSpider

Selenocysteine
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 16633
xref: Reference/PubChem-compound 25076
xref: Reference/CAS 10236-58-5
xref: Reference/HMDB HMDB0003288
xref: Reference/BioCyc L-SELENOCYSTEINE
xref: Reference/KEGG Compound C05688
xref: Reference/ChemSpider 23436
chemical formula: C3H7NO2Se
molecular weight: 168.9642
structure: ChemicalStructure/PW C001829

Reference/KEGG Compound C01118
type: UnificationXref
id: C01118
db: KEGG Compound

Reference/ChEBI CHEBI 17499
type: UnificationXref
id: CHEBI:17499
db: ChEBI

Hydrogen selenide
type: SmallMolecule
cellular location: Chloroplast
entity reference: Hydrogen selenide

Reference/ChemSpider 388301
type: UnificationXref
id: 388301
db: ChemSpider

Reference/ChemSpider 389632
type: UnificationXref
id: 389632
db: ChemSpider

Reference/BioCyc CPD-1302
type: UnificationXref
id: CPD-1302
db: BioCyc

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2
type: ProteinReference
xref: Reference/UniProt Q9SRV5
organism: Arabidopsis thaliana

Cystathionine beta-lyase, chloroplastic
type: ProteinReference
xref: Reference/UniProt P53780
organism: Arabidopsis thaliana

Reference/KEGG Compound C00022
type: UnificationXref
id: C00022
db: KEGG Compound

Reference/ChEBI CHEBI 16160
type: UnificationXref
id: CHEBI:16160
db: ChEBI

Reference/CAS 56-65-5
type: UnificationXref
id: 56-65-5
db: CAS

Reference/KEGG Compound C00021
type: UnificationXref
id: C00021
db: KEGG Compound

Reference/KEGG Compound C00020
type: UnificationXref
id: C00020
db: KEGG Compound

Methionine S-methyltransferase
type: ProteinReference
xref: Reference/UniProt Q9LTB2
organism: Arabidopsis thaliana

Compound/PW C000003 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Ketobutyric acid
stoichiometric coefficient: 1.0

Thioredoxin reductase 2
type: ProteinReference
xref: Reference/UniProt Q39242
organism: Arabidopsis thaliana

Compound/PW C044571 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Methylselenic acid
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 26630
type: UnificationXref
id: CHEBI:26630
db: ChEBI

Reference/HMDB HMDB0000243
type: UnificationXref
id: HMDB0000243
db: HMDB

Water
type: SmallMolecule
cellular location: Chloroplast
entity reference: Water

Compound/PW C000032 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine monophosphate
stoichiometric coefficient: 1.0

Reference/GENE ONTOLOGY GO 0005737
type: UnificationXref
id: GO:0005737
db: GENE ONTOLOGY

Reference/HMDB HMDB0000005
type: UnificationXref
id: HMDB0000005
db: HMDB

ChemicalStructure/PW C000003
type: ChemicalStructure
structure format: SMILES
structure data: CCC(=O)C(O)=O

Reference/HMDB HMDB0006343
type: UnificationXref
id: HMDB0006343
db: HMDB

Reference/KEGG Compound C02218
type: UnificationXref
id: C02218
db: KEGG Compound

Reference/PubChem-compound 1090
type: UnificationXref
id: 1090
db: PubChem-compound

2.1.1.12
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000749 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000921 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C109056 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002019 Cytoplasm/Stoichiometry/1.0
right: S-Adenosylhomocysteine
right: S-Methyl-L-methionine
spontaneous: false
EC number: 2.1.1.12
left: Selenomethionine
left: S-Adenosylmethionine
name: S-Adenosylmethionine + Selenomethionine ↔ S-Adenosylhomocysteine + S-Methyl-L-methionine
conversion direction: REVERSIBLE

1.8.1.9
type: BiochemicalReaction
participant stoichiometry: Compound/PW C040034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000146 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000143 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C044570 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C044571 Cytoplasm/Stoichiometry/1.0
right: methylselenol
right: Hydrogen Ion
right: NADPH
spontaneous: false
EC number: 1.8.1.9
left: Methylselenic acid
left: NADP
name: Methylselenic acid + NADP → Hydrogen Ion + NADPH + methylselenol
conversion direction: LEFT_TO_RIGHT

Selenocystathionine
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 26630
xref: Reference/ChemSpider 88693
xref: Reference/PubChem-compound 98223
xref: Reference/KEGG Compound C05699
xref: Reference/HMDB HMDB0006343
xref: Reference/CAS 2196-58-9
chemical formula: C7H14N2O4Se
molecular weight: 270.01187
structure: ChemicalStructure/PW C002727

Reference/ChEBI CHEBI 30831
type: UnificationXref
id: CHEBI:30831
db: ChEBI

Reference/HMDB HMDB0000254
type: UnificationXref
id: HMDB0000254
db: HMDB

Compound/PW C000105 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Alanine
stoichiometric coefficient: 1.0

Reference/BioCyc AMP
type: UnificationXref
id: AMP
db: BioCyc

ChemicalStructure/PW C000174
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(O)=O

Reference/KEGG Compound C00041
type: UnificationXref
id: C00041
db: KEGG Compound

Reference/ChEBI CHEBI 77012
type: UnificationXref
id: CHEBI:77012
db: ChEBI

Selenomethionyl-tRNA(Met)
type: RnaReference
xref: Reference/ChEBI CHEBI 9100
organism: Arabidopsis thaliana

Reference/ChEBI CHEBI 29173
type: UnificationXref
id: CHEBI:29173
db: ChEBI

ChemicalStructure/PW C001829
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](C[SeH])C(O)=O

Reference/ChEBI CHEBI 15339
type: UnificationXref
id: CHEBI:15339
db: ChEBI

2.1.1.14
type: BiochemicalReaction
participant stoichiometry: Compound/PW C002019 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002066 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C007732 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C007828 Chloroplast/Stoichiometry/1.0
right: Tetrahydropteroyltri-L-glutamate
right: Selenomethionine
spontaneous: false
EC number: 2.1.1.14
left: 5-Methyltetrahydropteroyltri-L-glutamate
left: Selenohomocysteine
name: 5-Methyltetrahydropteroyltri-L-glutamate + Selenohomocysteine → Selenomethionine + Tetrahydropteroyltri-L-glutamate
conversion direction: LEFT_TO_RIGHT

4.4.1.13
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C109066 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C109070 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002066 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000035 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002727 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000164 Chloroplast/Stoichiometry/1.0
right: Ammonia
right: 2-Iminopropanoate
right: 2-Aminoacrylate
right: Pyruvic acid
right: Selenohomocysteine
spontaneous: false
EC number: 4.4.1.13
left: 2-Iminopropanoate
left: Water
left: 2-Aminoacrylate
left: Selenocystathionine
name: 2-Aminoacrylate + 2-Iminopropanoate + Selenocystathionine + Water → 2-Aminoacrylate + 2-Iminopropanoate + Ammonia + Pyruvic acid + Selenohomocysteine
conversion direction: LEFT_TO_RIGHT

Reference/KEGG Compound C00042
type: UnificationXref
id: C00042
db: KEGG Compound

Reference/ChemSpider 5675
type: UnificationXref
id: 5675
db: ChemSpider

Reaction213078
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000174 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C109071 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002727 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001829 Chloroplast/Stoichiometry/1.0
right: Selenocystathionine
right: Succinic acid
spontaneous: false
left: Selenocysteine
left: O-Succinyl-L-homoserine
name: O-Succinyl-L-homoserine + Selenocysteine → Selenocystathionine + Succinic acid
conversion direction: LEFT_TO_RIGHT

Reference/ChemSpider 1078
type: UnificationXref
id: 1078
db: ChemSpider

2.8.1.7
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000105 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040968 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C006752 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040969 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001829 Chloroplast/Stoichiometry/1.0
right: L-Alanine
right: Hydrogen selenide
right: an unknown oxidized electron acceptor
spontaneous: false
EC number: 2.8.1.7
left: Selenocysteine
left: an unknown reduced electron acceptor
name: Selenocysteine + an unknown reduced electron acceptor ← Hydrogen selenide + L-Alanine + an unknown oxidized electron acceptor
conversion direction: RIGHT_TO_LEFT

Reference/HMDB HMDB0000939
type: UnificationXref
id: HMDB0000939
db: HMDB

Compound/PW C001420 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Compound/PW C109070 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Iminopropanoate
stoichiometric coefficient: 1.0

Compound/PW C000749 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: S-Adenosylhomocysteine
stoichiometric coefficient: 1.0

Selenohomocysteine
type: SmallMoleculeReference
xref: Reference/PubChem-compound 440763
xref: Reference/ChemSpider 389632
xref: Reference/HMDB HMDB0004119
xref: Reference/CAS 29412-93-9
xref: Reference/BioCyc SELENOHOMOCYSTEINE
xref: Reference/KEGG Compound C05698
chemical formula: C4H9NO2Se
molecular weight: 182.97984
structure: ChemicalStructure/PW C002066

1.8.1.9
type: BiochemicalReaction
participant stoichiometry: Compound/PW C040034 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C006752 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000146 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000143 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C006761 Cytoplasm/Stoichiometry/1.0
right: Hydrogen Ion
right: Selenite
right: NADPH
spontaneous: false
EC number: 1.8.1.9
left: Hydrogen selenide
left: NADP
name: Hydrogen selenide + NADP ← Hydrogen Ion + NADPH + Selenite
conversion direction: RIGHT_TO_LEFT

Reference/ChemSpider 14375
type: UnificationXref
id: 14375
db: ChemSpider

Cytoplasm
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005737

Compound/PW C108886 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: Diphosphoric acid
stoichiometric coefficient: 1.0

NADPH
type: SmallMolecule
cellular location: Cytoplasm
entity reference: NADPH

Reference/PubChem-compound 254741368
type: UnificationXref
id: 254741368
db: PubChem-compound

Reference/PubChem-compound 254741367
type: UnificationXref
id: 254741367
db: PubChem-compound

Reference/ChEBI CHEBI 16633
type: UnificationXref
id: CHEBI:16633
db: ChEBI

Reference/ChEBI CHEBI 15422
type: UnificationXref
id: CHEBI:15422
db: ChEBI

TransportCatalysis2035
type: Catalysis
controller: Unknown
controlled: Transport10865
control type: ACTIVATION

Reference/SMPDB SMP0122665
type: UnificationXref
id: SMP0122665
db: SMPDB

ReactionCatalysis202697
type: Catalysis
controller: Cystathionine beta-lyase, chloroplastic
controlled: 4.4.1.13
control type: ACTIVATION

ChemicalStructure/PW C109050
type: ChemicalStructure
structure format: SMILES
structure data: C\C=C(/N)C(O)=O

Reference/UniProt Q9M2T9
type: UnificationXref
id: Q9M2T9
db: UniProt

ReactionCatalysis202696
type: Catalysis
controller: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2
controlled: 2.1.1.14
control type: ACTIVATION

ChemicalStructure/PW C109051
type: ChemicalStructure
structure format: SMILES
structure data: CCC(=N)C(O)=O

ReactionCatalysis202699
type: Catalysis
controller: Cysteine desulfurase 1, chloroplastic
controlled: 2.8.1.7
control type: ACTIVATION

Arabidopsis thaliana
type: BioSource
xref: Reference/TAXONOMY 3702

ReactionCatalysis202698
type: Catalysis
controller: Cystathionine gamma-synthase 1, chloroplastic
controlled: Reaction213078
control type: ACTIVATION

Reference/UniProt Q39242
type: UnificationXref
id: Q39242
db: UniProt

Reference/CAS 7732-18-5
type: UnificationXref
id: 7732-18-5
db: CAS

Reference/CAS 61-19-8
type: UnificationXref
id: 61-19-8
db: CAS

Reference/ChemSpider 17625690
type: UnificationXref
id: 17625690
db: ChemSpider

Hydrogen selenide
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0011110
xref: Reference/PubChem-compound 533
xref: Reference/CAS 7783-07-5
xref: Reference/ChEBI CHEBI 16503
xref: Reference/KEGG Compound C01528
xref: Reference/ChemSpider 518
chemical formula: H2Se
molecular weight: 81.932175
structure: ChemicalStructure/PW C006752

ChemicalStructure/PW C000032
type: ChemicalStructure
structure format: SMILES

Compound/PW C109066 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: 2-Aminoacrylate
stoichiometric coefficient: 1.0

Hydrogen Ion
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Hydrogen Ion

Selenomethionyl-tRNA(Met)
type: Rna
cellular location: Chloroplast
entity reference: Selenomethionyl-tRNA(Met)

Reference/CAS 127-17-3
type: UnificationXref
id: 127-17-3
db: CAS

ReactionCatalysis202690
type: Catalysis
controller: Thioredoxin reductase 2
controlled: 1.8.1.9
control type: ACTIVATION

Methylselenic acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Methylselenic acid

Methionine--tRNA ligase, chloroplastic/mitochondrial
type: ProteinReference
xref: Reference/UniProt Q9M2T9
organism: Arabidopsis thaliana

Reference/KEGG Compound C20905
type: UnificationXref
id: C20905
db: KEGG Compound

Reference/KEGG Compound C20904
type: UnificationXref
id: C20904
db: KEGG Compound

Reference/BioCyc AMMONIA
type: UnificationXref
id: AMMONIA
db: BioCyc

ChemicalStructure/PW C000035
type: ChemicalStructure
structure format: SMILES
structure data: N

ChemicalStructure/PW C109056
type: ChemicalStructure
structure format: SMILES
structure data: C[S+](C)CC[C@H](N)C(O)=O

Methionine gamma-lyase
type: Protein
cellular location: Cytoplasm
entity reference: Methionine gamma-lyase

Reference/PubChem-compound 124489574
type: UnificationXref
id: 124489574
db: PubChem-compound

TransportCatalysis2033
type: Catalysis
controller: Unknown
controlled: Transport10863
control type: ACTIVATION

ChemicalStructure/PW C108886
type: ChemicalStructure
structure format: SMILES
structure data: OP(O)(=O)OP(O)(O)=O

TransportCatalysis2032
type: Catalysis
controller: Unknown
controlled: Transport10862
control type: ACTIVATION

ChemicalStructure/PW C044570
type: ChemicalStructure
structure format: SMILES
structure data: C[SeH]

Reference/CAS 1464-42-2
type: UnificationXref
id: 1464-42-2
db: CAS

ChemicalStructure/PW C044571
type: ChemicalStructure
structure format: SMILES
structure data: C[Se](O)=O

Reference/PubChem-compound 533
type: UnificationXref
id: 533
db: PubChem-compound

RNA/9 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: tRNA(Met)
stoichiometric coefficient: 1.0

Adenosine triphosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15422
xref: Reference/PubChem-compound 5957
xref: Reference/HMDB HMDB0000538
xref: Reference/CAS 56-65-5
xref: Reference/ChemSpider 5742
xref: Reference/BioCyc ATP
xref: Reference/KEGG Compound C00002
chemical formula: C10H16N5O13P3
molecular weight: 506.99576
structure: ChemicalStructure/PW C000414

Reference/CAS 7783-07-5
type: UnificationXref
id: 7783-07-5
db: CAS

Reference/ChEBI CHEBI 17614
type: UnificationXref
id: CHEBI:17614
db: ChEBI

Reference/UniProt P55217
type: UnificationXref
id: P55217
db: UniProt

5-Methyltetrahydropteroyltri-L-glutamate
type: SmallMolecule
cellular location: Chloroplast
entity reference: 5-Methyltetrahydropteroyltri-L-glutamate

Reference/BioCyc SELENOHOMOCYSTEINE
type: UnificationXref
id: SELENOHOMOCYSTEINE
db: BioCyc

Reference/PubChem-compound 15103
type: UnificationXref
id: 15103
db: PubChem-compound

5-Methyltetrahydropteroyltri-L-glutamate
type: SmallMoleculeReference
xref: Reference/PubChem-compound 16722111
xref: Reference/BioCyc CPD-1302
xref: Reference/ChEBI CHEBI 17614
xref: Reference/ChemSpider 17625689
xref: Reference/KEGG Compound C04489
xref: Reference/HMDB HMDB0012177
chemical formula: C30H39N9O12
molecular weight: 717.2718
structure: ChemicalStructure/PW C007732

Reference/HMDB HMDB0000045
type: UnificationXref
id: HMDB0000045
db: HMDB

ChemicalStructure/PW C000164
type: ChemicalStructure
structure format: SMILES
structure data: CC(=O)C(O)=O

Selenite
type: SmallMoleculeReference
xref: Reference/ChemSpider 1059
xref: Reference/KEGG Compound C05684
xref: Reference/PubChem-compound 1090
xref: Reference/HMDB HMDB0011119
xref: Reference/ChEBI CHEBI 18212
xref: Reference/CAS 14124-67-5
chemical formula: H2O3Se
molecular weight: 129.91692
structure: ChemicalStructure/PW C006761

ChemicalStructure/PW C109066
type: ChemicalStructure
structure format: SMILES
structure data: NC(=C)C(O)=O

Reference/PathWhiz PW123981
type: UnificationXref
id: PW123981
db: PathWhiz

Ammonia
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Ammonia

Reference/ChemSpider 17625689
type: UnificationXref
id: 17625689
db: ChemSpider

Reference/HMDB HMDB0000161
type: UnificationXref
id: HMDB0000161
db: HMDB

Reference/PubChem-compound 962
type: UnificationXref
id: 962
db: PubChem-compound

Reference/ChemSpider 31983
type: UnificationXref
id: 31983
db: ChemSpider

Selenocompound Metabolism
type: Pathway
pathway order: PathwayEnzymeReaction/2461453
pathway order: PathwayEnzymeReaction/2461552
pathway order: PathwayTransport/2461549
pathway order: PathwayEnzymeReaction/2461550
pathway order: PathwayTransport/2461555
pathway order: PathwayEnzymeReaction/2461438
pathway order: PathwayTransport/2461551
pathway order: PathwayEnzymeReaction/2461446
pathway order: PathwayEnzymeReaction/2461556
pathway order: PathwayEnzymeReaction/2461454
pathway order: PathwayEnzymeReaction/2461553
pathway order: PathwayEnzymeReaction/2461499
pathway component: TransportCatalysis2035
pathway component: ReactionCatalysis202689
pathway component: ReactionCatalysis202700
pathway component: 6.1.1.10
pathway component: ReactionCatalysis202697
pathway component: ReactionCatalysis202696
pathway component: Transport10865
pathway component: 2.1.1.12
pathway component: 2.1.1.14
pathway component: ReactionCatalysis202699
pathway component: 4.4.1.13
pathway component: ReactionCatalysis202698
pathway component: ReactionCatalysis202687
pathway component: 1.8.1.9
pathway component: Reaction213078
pathway component: 2.8.1.7
pathway component: Transport10862
pathway component: 4.4.1.11
pathway component: Transport10863
pathway component: ReactionCatalysis202680
pathway component: ReactionCatalysis202690
pathway component: TransportCatalysis2033
pathway component: TransportCatalysis2032
xref: Reference/SMPDB SMP0122665
xref: Reference/PathWhiz PW123981
organism: Arabidopsis thaliana

Ammonia
type: SmallMolecule
cellular location: Chloroplast
entity reference: Ammonia

L-Alanine
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00041
xref: Reference/ChemSpider 5735
xref: Reference/ChEBI CHEBI 16977
xref: Reference/BioCyc L-ALPHA-ALANINE
xref: Reference/HMDB HMDB0000161
xref: Reference/CAS 56-41-7
xref: Reference/PubChem-compound 5950
chemical formula: C3H7NO2
molecular weight: 89.047676
structure: ChemicalStructure/PW C000105

Reference/UniProt Q93WX6
type: UnificationXref
id: Q93WX6
db: UniProt

Reference/CAS 29412-93-9
type: UnificationXref
id: 29412-93-9
db: CAS

Reference/ChEBI CHEBI 17420
type: UnificationXref
id: CHEBI:17420
db: ChEBI

ChemicalStructure/PW C109070
type: ChemicalStructure
structure format: SMILES
structure data: CC(=N)C(O)=O

Reference/CAS 2196-58-9
type: UnificationXref
id: 2196-58-9
db: CAS

ChemicalStructure/PW C109071
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](CCOC(=O)CCC(O)=O)C(O)=O

Reference/KEGG Compound C00080
type: UnificationXref
id: C00080
db: KEGG Compound

Reference/CAS 110-15-6
type: UnificationXref
id: 110-15-6
db: CAS

Selenomethionine
type: SmallMolecule
cellular location: Chloroplast
entity reference: Selenomethionine

ChemicalStructure/PW C006752
type: ChemicalStructure
structure format: SMILES
structure data: [SeH2]

Adenosine triphosphate
type: SmallMolecule
cellular location: Chloroplast
entity reference: Adenosine triphosphate

methylselenol
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 64685
xref: Reference/HMDB HMDB0060488
chemical formula: CH4Se
molecular weight: 95.94782
structure: ChemicalStructure/PW C044570

Methylselenic acid
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 77012
xref: Reference/PubChem-compound 124489574
xref: Reference/HMDB HMDB0060489
chemical formula: CH4O2Se
molecular weight: 127.93765
structure: ChemicalStructure/PW C044571

Reference/HMDB HMDB0000051
type: UnificationXref
id: HMDB0000051
db: HMDB

Reference/HMDB HMDB0002111
type: UnificationXref
id: HMDB0002111
db: HMDB

Reference/ChEBI CHEBI 32816
type: UnificationXref
id: CHEBI:32816
db: ChEBI

Reference/ChEBI CHEBI 15377
type: UnificationXref
id: CHEBI:15377
db: ChEBI

Reference/PubChem-compound 6054
type: UnificationXref
id: 6054
db: PubChem-compound

Chloroplast
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0009507

Reference/ChEBI CHEBI 15378
type: UnificationXref
id: CHEBI:15378
db: ChEBI

ChemicalStructure/PW C040034
type: ChemicalStructure
structure format: SMILES
structure data: [H+]

Reference/BioCyc PYRUVATE
type: UnificationXref
id: PYRUVATE
db: BioCyc

ChemicalStructure/PW C000414
type: ChemicalStructure
structure format: SMILES

an unknown reduced electron acceptor
type: SmallMolecule
cellular location: Chloroplast
entity reference: an unknown reduced electron acceptor

Compound/PW C040969 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: an unknown reduced electron acceptor
stoichiometric coefficient: 1.0

Reference/PubChem-compound 5886
type: UnificationXref
id: 5886
db: PubChem-compound

Compound/PW C006761 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Selenite
stoichiometric coefficient: 1.0

Reference/ChemSpider 23436
type: UnificationXref
id: 23436
db: ChemSpider

Reference/ChEBI CHEBI 29888
type: UnificationXref
id: CHEBI:29888
db: ChEBI

ChemicalStructure/PW C007732
type: ChemicalStructure
structure format: SMILES

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2
type: Protein
cellular location: Chloroplast
entity reference: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2

Compound/PW C109056 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: S-Methyl-L-methionine
stoichiometric coefficient: 1.0

2-Ketobutyric acid
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 30831
xref: Reference/HMDB HMDB0000005
xref: Reference/CAS 600-18-0
xref: Reference/ChemSpider 57
xref: Reference/KEGG Compound C00109
xref: Reference/PubChem-compound 58
xref: Reference/BioCyc 2-OXOBUTANOATE
chemical formula: C4H6O3
molecular weight: 102.03169
structure: ChemicalStructure/PW C000003

ChemicalStructure/PW C006761
type: ChemicalStructure
structure format: SMILES
structure data: O[Se](O)=O

Cystathionine gamma-synthase 1, chloroplastic
type: ProteinReference
xref: Reference/UniProt P55217
organism: Arabidopsis thaliana

Hydrogen selenide
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Hydrogen selenide

Reference/ChEBI CHEBI 27585
type: UnificationXref
id: CHEBI:27585
db: ChEBI

Methionine gamma-lyase
type: ProteinReference
xref: Reference/UniProt Q9SGU9
organism: Arabidopsis thaliana

tRNA(Met)
type: Rna
cellular location: Chloroplast
entity reference: tRNA(Met)

Methionine--tRNA ligase, chloroplastic/mitochondrial
type: Protein
cellular location: Chloroplast
entity reference: Methionine--tRNA ligase, chloroplastic/mitochondrial

Reference/PubChem-compound 6083
type: UnificationXref
id: 6083
db: PubChem-compound

Reference/CAS 2466-09-3
type: UnificationXref
id: 2466-09-3
db: CAS

Transport10865
type: Transport
participant stoichiometry: Compound/PW C002019 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002019 Cytoplasm/Stoichiometry/1.0
right: Selenomethionine
spontaneous: false
left: Selenomethionine
name: Selenomethionine (↔) Transport: Arabidopsis thaliana, Cell, Chloroplast to Arabidopsis thaliana, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 4349
type: UnificationXref
id: 4349
db: PubChem-compound

Reference/ChemSpider 518
type: UnificationXref
id: 518
db: ChemSpider

ChemicalStructure/PW C000749
type: ChemicalStructure
structure format: SMILES

Transport10862
type: Transport
participant stoichiometry: Compound/PW C002019 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002019 Cytoplasm/Stoichiometry/1.0
right: Selenomethionine
spontaneous: false
left: Selenomethionine
name: Selenomethionine (→) Transport: Arabidopsis thaliana, Cell, Chloroplast to Arabidopsis thaliana, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Reference/HMDB HMDB0012177
type: UnificationXref
id: HMDB0012177
db: HMDB

Transport10863
type: Transport
participant stoichiometry: Compound/PW C006752 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C006752 Cytoplasm/Stoichiometry/1.0
right: Hydrogen selenide
spontaneous: false
left: Hydrogen selenide
name: Hydrogen selenide (←) Transport: Arabidopsis thaliana, Cell, Chloroplast to Arabidopsis thaliana, Cell, Cytoplasm
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 25246222
type: UnificationXref
id: 25246222
db: PubChem-compound

Reference/PubChem-compound 22833512
type: UnificationXref
id: 22833512
db: PubChem-compound

Cystathionine gamma-synthase 1, chloroplastic
type: Protein
cellular location: Chloroplast
entity reference: Cystathionine gamma-synthase 1, chloroplastic

2-Iminopropanoate
type: SmallMolecule
cellular location: Chloroplast
entity reference: 2-Iminopropanoate

Water
type: SmallMoleculeReference
xref: Reference/PubChem-compound 962
xref: Reference/ChEBI CHEBI 15377
xref: Reference/KEGG Compound C00001
xref: Reference/ChemSpider 937
xref: Reference/HMDB HMDB0002111
xref: Reference/CAS 7732-18-5
chemical formula: H2O
molecular weight: 18.010565
structure: ChemicalStructure/PW C001420

Reference/HMDB HMDB0012290
type: UnificationXref
id: HMDB0012290
db: HMDB

tRNA(Met)
type: RnaReference
xref: Reference/ChEBI CHEBI 29173
organism: Arabidopsis thaliana

Compound/PW C109071 Chloroplast/Stoichiometry/1.0
type: Stoichiometry
physical entity: O-Succinyl-L-homoserine
stoichiometric coefficient: 1.0

Reference/PubChem-compound 1060
type: UnificationXref
id: 1060
db: PubChem-compound

Reference/HMDB HMDB0059597
type: UnificationXref
id: HMDB0059597
db: HMDB

ReactionCatalysis202700
type: Catalysis
controller: Thioredoxin reductase 2
controlled: 1.8.1.9
control type: ACTIVATION

6.1.1.10
type: BiochemicalReaction
participant stoichiometry: RNA/9 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000032 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002019 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C108886 Chloroplast/Stoichiometry/1.0
participant stoichiometry: RNA/10 Chloroplast/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Chloroplast/Stoichiometry/1.0
right: Selenomethionyl-tRNA(Met)
right: Adenosine monophosphate
right: Diphosphoric acid
spontaneous: false
EC number: 6.1.1.10
left: tRNA(Met)
left: Selenomethionine
left: Adenosine triphosphate
name: Adenosine triphosphate + Selenomethionine + tRNA(Met) → Adenosine monophosphate + Diphosphoric acid + Selenomethionyl-tRNA(Met)
conversion direction: LEFT_TO_RIGHT

Reference/ChEBI CHEBI 16680
type: UnificationXref
id: CHEBI:16680
db: ChEBI

ChemicalStructure/PW C007828
type: ChemicalStructure
structure format: SMILES

ChemicalStructure/PW C002019
type: ChemicalStructure
structure format: SMILES
structure data: C[Se]CCC(N)C(O)=O

4.4.1.11
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000035 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C109050 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C002019 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C044570 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C109051 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000003 Cytoplasm/Stoichiometry/1.0
right: methylselenol
right: 2-Ketobutyric acid
right: 2-Iminobutanoate
right: Ammonia
right: 2-Aminobut-2-enoate
spontaneous: false
EC number: 4.4.1.11
left: Selenomethionine
left: Water
left: 2-Iminobutanoate
left: 2-Aminobut-2-enoate
name: 2-Aminobut-2-enoate + 2-Iminobutanoate + Selenomethionine + Water → 2-Aminobut-2-enoate + 2-Iminobutanoate + 2-Ketobutyric acid + Ammonia + methylselenol
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 96023642
type: UnificationXref
id: 96023642
db: PubChem-compound

Selenomethionine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Selenomethionine

Reference/PubChem-compound 24762165
type: UnificationXref
id: 24762165
db: PubChem-compound

methylselenol
type: SmallMolecule
cellular location: Cytoplasm
entity reference: methylselenol

Reference/KEGG Compound C05684
type: UnificationXref
id: C05684
db: KEGG Compound

Reference/PubChem-compound 98223
type: UnificationXref
id: 98223
db: PubChem-compound

2-Ketobutyric acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: 2-Ketobutyric acid

S-Adenosylmethionine
type: SmallMolecule
cellular location: Cytoplasm
entity reference: S-Adenosylmethionine

Selenohomocysteine
type: SmallMolecule
cellular location: Chloroplast
entity reference: Selenohomocysteine