<?xml version="1.0" encoding="UTF-8"?>
<super-pathway-visualization>
  <named-for-id type="integer">369448</named-for-id>
  <named-for-type>Pathway</named-for-type>
  <cached-name>Hydrogen Sulfide Biosynthesis I</cached-name>
  <cached-description>Many bacteria can produce hydrogen sulfide, which can be used as defense system against antibiotics and oxidative stress. This pathway is one of the hydrogen sulfide biosynthesis pathways (totally two). L-Cysteine is transported by L-cysteine ABC transporter and convert to 3-mercaptopyruvic acid by facilitation of aspartate aminotransferase. 3-Mercaptopyruvic acid is later catalyzed to form pyruvic acid and hydrogen sulfide by 3-mercaptopyruvate sulfurtransferase. </cached-description>
  <cached-subject>Metabolic</cached-subject>
  <pw-id>PW368964</pw-id>
  <pathway-visualization-contexts>
    <pathway-visualization-context>
      <position>Center</position>
      <id>PathwayVisualizationContext369006</id>
      <pathway-visualization>
        <height type="integer">2300</height>
        <width type="integer">3050</width>
        <background-color>#000099</background-color>
        <id>PathwayVisualization359445</id>
        <pathway>
          <id type="integer">369448</id>
          <name>Hydrogen Sulfide Biosynthesis I</name>
          <description>Many bacteria can produce hydrogen sulfide, which can be used as defense system against antibiotics and oxidative stress. This pathway is one of the hydrogen sulfide biosynthesis pathways (totally two). L-Cysteine is transported by L-cysteine ABC transporter and convert to 3-mercaptopyruvic acid by facilitation of aspartate aminotransferase. 3-Mercaptopyruvic acid is later catalyzed to form pyruvic acid and hydrogen sulfide by 3-mercaptopyruvate sulfurtransferase. </description>
          <subject>Metabolic</subject>
          <species-id type="integer">1171</species-id>
          <sub-pathways>
            <sub-pathway>
              <id type="integer">356133</id>
              <reference-pathway-id type="integer">564</reference-pathway-id>
              <altext nil="true"/>
              <sub-pathway-type>SubPathway</sub-pathway-type>
              <sub-pathway-inputs>
                <sub-pathway-input>
                  <id type="integer">357136</id>
                  <element-id type="integer">1827</element-id>
                  <element-type>Compound</element-type>
                  <biological-state-id type="integer" nil="true"/>
                </sub-pathway-input>
              </sub-pathway-inputs>
            </sub-pathway>
          </sub-pathways>
        </pathway>
        <cell-types>
          <cell-type>
            <id type="integer">1</id>
            <name>Cell</name>
            <ontology-id>CL:0000000</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">6</id>
            <name>Myocyte</name>
            <ontology-id>CL:0000187</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">5</id>
            <name>Hepatocyte</name>
            <ontology-id>CL:0000182</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">3</id>
            <name>Neuron</name>
            <ontology-id>CL:0000540</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">12</id>
            <name>Astrocyte</name>
            <ontology-id>CL:0000127</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">2</id>
            <name>Platelet </name>
            <ontology-id>CL:0000233</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">4</id>
            <name>Cardiomyocyte</name>
            <ontology-id>CL:0000746</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">8</id>
            <name>Beta cell</name>
            <ontology-id>CL:0000639</ontology-id>
          </cell-type>
          <cell-type>
            <id type="integer">7</id>
            <name>Epithelial Cell</name>
            <ontology-id>CL:0000066</ontology-id>
          </cell-type>
        </cell-types>
        <species>
          <species>
            <id type="integer">1</id>
            <name>Homo sapiens</name>
            <taxonomy-id>9606</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Human</common-name>
          </species>
          <species>
            <id type="integer">3</id>
            <name>Escherichia coli</name>
            <taxonomy-id>562</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name></common-name>
          </species>
          <species>
            <id type="integer">17</id>
            <name>Rattus norvegicus</name>
            <taxonomy-id>10116</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Rat</common-name>
          </species>
          <species>
            <id type="integer">12</id>
            <name>Mus musculus</name>
            <taxonomy-id>10090</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Mouse</common-name>
          </species>
          <species>
            <id type="integer">24</id>
            <name>Solanum lycopersicum</name>
            <taxonomy-id>4081</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Tomato</common-name>
          </species>
          <species>
            <id type="integer">18</id>
            <name>Saccharomyces cerevisiae</name>
            <taxonomy-id>4932</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Yeast</common-name>
          </species>
          <species>
            <id type="integer">21</id>
            <name>Xenopus laevis</name>
            <taxonomy-id>8355</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>African clawed frog</common-name>
          </species>
          <species>
            <id type="integer">4</id>
            <name>Arabidopsis thaliana</name>
            <taxonomy-id>3702</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Thale cress</common-name>
          </species>
          <species>
            <id type="integer">49</id>
            <name>Bathymodiolus platifrons</name>
            <taxonomy-id>220390</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Deep sea mussel</common-name>
          </species>
          <species>
            <id type="integer">60</id>
            <name>Nitzschia sp.</name>
            <taxonomy-id>0001</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Nitzschia4</common-name>
          </species>
          <species>
            <id type="integer">5</id>
            <name>Bos taurus</name>
            <taxonomy-id>9913</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Cattle</common-name>
          </species>
          <species>
            <id type="integer">10</id>
            <name>Drosophila melanogaster</name>
            <taxonomy-id>7227</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Fruit fly</common-name>
          </species>
          <species>
            <id type="integer">6</id>
            <name>Caenorhabditis elegans</name>
            <taxonomy-id>6239</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Roundworm</common-name>
          </species>
          <species>
            <id type="integer">25</id>
            <name>Escherichia coli (strain K12)</name>
            <taxonomy-id>83333</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">23</id>
            <name>Pseudomonas aeruginosa</name>
            <taxonomy-id>287</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name></common-name>
          </species>
          <species>
            <id type="integer">2</id>
            <name>Bacteria</name>
            <taxonomy-id>2</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name>Bacteria</common-name>
          </species>
          <species>
            <id type="integer">19</id>
            <name>Schizosaccharomyces pombe</name>
            <taxonomy-id>4896</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name></common-name>
          </species>
          <species>
            <id type="integer">29</id>
            <name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</name>
            <taxonomy-id>559292</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Baker's yeast</common-name>
          </species>
          <species>
            <id type="integer">202</id>
            <name>Spathaspora passalidarum</name>
            <taxonomy-id>340170</taxonomy-id>
            <classification>Eukaryote</classification>
            <common-name>Spathaspora passalidarum</common-name>
          </species>
          <species>
            <id type="integer">1155</id>
            <name>Escherichia coli O157:H7 str. Sakai</name>
            <taxonomy-id>386585</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1156</id>
            <name>Escherichia coli 536</name>
            <taxonomy-id>362663</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1157</id>
            <name>Escherichia coli APEC O1</name>
            <taxonomy-id>405955</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1158</id>
            <name>Escherichia coli E24377A</name>
            <taxonomy-id>331111</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1159</id>
            <name>Escherichia coli HS</name>
            <taxonomy-id>331112</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1160</id>
            <name>Escherichia coli str. K-12 substr. DH10B</name>
            <taxonomy-id>316385</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1161</id>
            <name>Escherichia coli O157:H7 str. EC4115</name>
            <taxonomy-id>444450</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1162</id>
            <name>Escherichia coli O127:H6 str. E2348/69</name>
            <taxonomy-id>574521</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1163</id>
            <name>Escherichia coli UMN026</name>
            <taxonomy-id>585056</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1165</id>
            <name>Escherichia coli IAI1</name>
            <taxonomy-id>585034</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1166</id>
            <name>Escherichia coli S88</name>
            <taxonomy-id>585035</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1167</id>
            <name>Escherichia coli ED1a</name>
            <taxonomy-id>585397</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1168</id>
            <name>Escherichia coli IAI39</name>
            <taxonomy-id>585057</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1169</id>
            <name>Escherichia coli O157:H7 str. TW14359</name>
            <taxonomy-id>544404</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1170</id>
            <name>Escherichia coli O103:H2 str. 12009</name>
            <taxonomy-id>585395</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1171</id>
            <name>Escherichia coli O26:H11 str. 11368</name>
            <taxonomy-id>573235</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1172</id>
            <name>Escherichia coli O111:H- str. 11128</name>
            <taxonomy-id>585396</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1173</id>
            <name>Escherichia coli O55:H7 str. CB9615</name>
            <taxonomy-id>701177</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">26</id>
            <name>Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)</name>
            <taxonomy-id>481805</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">35</id>
            <name>Escherichia coli (strain ATCC 55124 / KO11)</name>
            <taxonomy-id>595495</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">36</id>
            <name>Escherichia coli (strain B / REL606)</name>
            <taxonomy-id>413997</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">37</id>
            <name>Escherichia coli (strain B / BL21-DE3)</name>
            <taxonomy-id>469008</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">39</id>
            <name>Escherichia coli (strain MS 21-1)</name>
            <taxonomy-id>749527</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">76</id>
            <name>Escherichia coli DORA_B_14</name>
            <taxonomy-id>1403944</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">77</id>
            <name>Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)</name>
            <taxonomy-id>199310</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">255</id>
            <name>Escherichia coli str. K-12 substr. MG1655</name>
            <taxonomy-id>511145</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">335</id>
            <name>Escherichia coli O157:H7</name>
            <taxonomy-id>83334</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">346</id>
            <name>Escherichia coli K-12</name>
            <taxonomy-id>679895</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name>E. coli K-12</common-name>
          </species>
          <species>
            <id type="integer">462</id>
            <name>Escherichia coli SE15</name>
            <taxonomy-id>431946</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1240</id>
            <name>Escherichia coli 042</name>
            <taxonomy-id>216592</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1241</id>
            <name>Escherichia coli W</name>
            <taxonomy-id>566546</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1243</id>
            <name>Escherichia coli IHE3034</name>
            <taxonomy-id>714962</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">1258</id>
            <name>Escherichia coli DH1</name>
            <taxonomy-id>536056</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">2466</id>
            <name>Escherichia coli O113:H21</name>
            <taxonomy-id>1078021</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">27</id>
            <name>Escherichia coli (strain SMS-3-5 / SECEC)</name>
            <taxonomy-id>439855</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">28</id>
            <name>Escherichia coli (strain UTI89 / UPEC)</name>
            <taxonomy-id>364106</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">32</id>
            <name>Escherichia coli (strain 55989 / EAEC)</name>
            <taxonomy-id>585055</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">33</id>
            <name>Escherichia coli (strain SE11)</name>
            <taxonomy-id>409438</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
          <species>
            <id type="integer">34</id>
            <name>Escherichia coli (strain K12 / MC4100 / BW2952)</name>
            <taxonomy-id>595496</taxonomy-id>
            <classification>Prokaryote</classification>
            <common-name nil="true"/>
          </species>
        </species>
        <subcellular-locations>
          <subcellular-location>
            <id type="integer">1</id>
            <name>Cytosol</name>
            <ontology-id>GO:0005829</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">2</id>
            <name>Mitochondrion</name>
            <ontology-id>GO:0005739</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">3</id>
            <name>Mitochondrial Matrix</name>
            <ontology-id>GO:0005759</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">5</id>
            <name>Cytoplasm</name>
            <ontology-id>GO:0005737</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">13</id>
            <name>Endoplasmic Reticulum</name>
            <ontology-id>GO:0005783</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">24</id>
            <name>Mitochondrial Intermembrane Space</name>
            <ontology-id>GO:0005758</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">4</id>
            <name>Peroxisome</name>
            <ontology-id>GO:0005777</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">10</id>
            <name>Cell Membrane</name>
            <ontology-id>GO:0005886</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">35</id>
            <name>Chloroplast</name>
            <ontology-id>GO:0009507</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">6</id>
            <name>Lysosome</name>
            <ontology-id>GO:0005764</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">11</id>
            <name>Extracellular Space</name>
            <ontology-id>GO:0005615</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">31</id>
            <name>Periplasmic Space</name>
            <ontology-id>GO:0005620</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">34</id>
            <name>Plant-Type Vacuole</name>
            <ontology-id>GO:0000325</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">7</id>
            <name>Endoplasmic Reticulum Membrane</name>
            <ontology-id>GO:0005789</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">12</id>
            <name>Mitochondrial Inner Membrane</name>
            <ontology-id>GO:0005743</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">14</id>
            <name>Mitochondrial Outer Membrane</name>
            <ontology-id>GO:0005741</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">15</id>
            <name>Nucleus</name>
            <ontology-id>GO:0005634</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">27</id>
            <name>Peroxisome Membrane</name>
            <ontology-id>GO:0005778</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">32</id>
            <name>Inner Membrane</name>
            <ontology-id>GO:0070258</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">16</id>
            <name>Lysosomal Lumen</name>
            <ontology-id>GO:0043202</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">18</id>
            <name>Melanosome Membrane</name>
            <ontology-id>GO:0033162</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">25</id>
            <name>Golgi Apparatus</name>
            <ontology-id>GO:0005794</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">20</id>
            <name>Endoplasmic Reticulum Lumen</name>
            <ontology-id>GO:0005788</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">21</id>
            <name>Synapse</name>
            <ontology-id>GO:0045202</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">36</id>
            <name>Membrane</name>
            <ontology-id>GO:0016020</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">53</id>
            <name>Endoplasmic Reticulum Body</name>
            <ontology-id>GO:0010168</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">40</id>
            <name>Periplasm</name>
            <ontology-id>GO:0042597</ontology-id>
          </subcellular-location>
          <subcellular-location>
            <id type="integer">19</id>
            <name>Sarcoplasmic Reticulum</name>
            <ontology-id>GO:0016529</ontology-id>
          </subcellular-location>
        </subcellular-locations>
        <tissues>
          <tissue>
            <id type="integer">1</id>
            <name>Liver</name>
            <ontology-id>BTO:0000759</ontology-id>
            <visualization-template-id type="integer">72</visualization-template-id>
            <drawable-image-id type="integer">9</drawable-image-id>
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            <name>Oxoglutaric acid</name>
            <hmdb-id>HMDB0000208</hmdb-id>
            <description>Oxoglutaric acid, also known as alpha-ketoglutarate, alpha-ketoglutaric acid, AKG, or 2-oxoglutaric acid, is classified as a gamma-keto acid or a gamma-keto acid derivative. gamma-Keto acids are organic compounds containing an aldehyde substituted with a keto group on the C4 carbon atom. alpha-Ketoglutarate is considered to be soluble (in water) and acidic. alpha-Ketoglutarate is a key molecule in the TCA cycle, playing a fundamental role in determining the overall rate of this important metabolic process (PMID: 26759695). In the TCA cycle, AKG is decarboxylated to succinyl-CoA and carbon dioxide by AKG dehydrogenase, which functions as a key control point of the TCA cycle. Additionally, AKG can be generated from isocitrate by oxidative decarboxylation catalyzed by the enzyme known as isocitrate dehydrogenase (IDH). In addition to these routes of production, AKG can be produced from glutamate by oxidative deamination via glutamate dehydrogenase, and as a product of pyridoxal phosphate-dependent transamination reactions (mediated by branched-chain amino acid transaminases) in which glutamate is a common amino donor. AKG is a nitrogen scavenger and a source of glutamate and glutamine that stimulates protein synthesis and inhibits protein degradation in muscles. In particular, AKG can decrease protein catabolism and increase protein synthesis to enhance bone tissue formation in skeletal muscles (PMID: 26759695). Interestingly, enteric feeding of AKG supplements can significantly increase circulating plasma levels of hormones such as insulin, growth hormone, and insulin-like growth factor-1 (PMID: 26759695). It has recently been shown that AKG can extend the lifespan of adult C. elegans by inhibiting ATP synthase and TOR (PMID: 24828042). In combination with molecular oxygen, alpha-ketoglutarate is required for the hydroxylation of proline to hydroxyproline in the production of type I collagen. A recent study has shown that alpha-ketoglutarate promotes TH1 differentiation along with the depletion of glutamine thereby favouring Treg (regulatory T-cell) differentiation (PMID: 26420908). alpha-Ketoglutarate has been found to be associated with fumarase deficiency, 2-ketoglutarate dehydrogenase complex deficiency, and D-2-hydroxyglutaric aciduria, which are all inborn errors of metabolism (PMID: 8338207).</description>
            <cas>328-50-7</cas>
            <kegg-id>C00026</kegg-id>
            <pubchem-cid>51</pubchem-cid>
            <chebi-id>30915</chebi-id>
            <biocyc-id>2-KETOGLUTARATE</biocyc-id>
            <chemspider-id>50</chemspider-id>
            <drugbank-id>DB02926</drugbank-id>
            <moldb-smiles>OC(=O)CCC(=O)C(O)=O</moldb-smiles>
            <moldb-formula>C5H6O5</moldb-formula>
            <moldb-inchi>InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)</moldb-inchi>
            <moldb-inchikey>KPGXRSRHYNQIFN-UHFFFAOYSA-N</moldb-inchikey>
            <moldb-iupac>2-oxopentanedioic acid</moldb-iupac>
            <moldb-average-mass>146.0981</moldb-average-mass>
            <moldb-mono-mass>146.021523302</moldb-mono-mass>
            <moldb-alogps-logs>-0.44</moldb-alogps-logs>
            <moldb-donor-count>2</moldb-donor-count>
            <moldb-traditional-iupac>oxoglutarate</moldb-traditional-iupac>
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            <drugbank-metabolite-id nil="true"/>
            <foodb-id>FDB003361</foodb-id>
            <synonyms>2-ketoglutarate;2-ketoglutaric acid;2-oxo-1,5-pentanedioate;2-oxo-1,5-pentanedioic acid;2-oxoglutarate;2-oxoglutaric acid;2-oxopentanedioate;2-oxopentanedioic acid;Oxoglutarate;Alpha-ketoglutaric acid;Oxoglutaric acid;A-ketoglutarate;A-ketoglutaric acid;Alpha-ketoglutarate;α-ketoglutarate;α-ketoglutaric acid</synonyms>
            <pwc-id>PW_C000134</pwc-id>
            <short-name>AKG</short-name>
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            <name>L-Cysteine</name>
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            <description>Cysteine is a naturally occurring, sulfur-containing amino acid that is found in most proteins, although only in small quantities. Cysteine is unique amongst the twenty natural amino acids as it contains a thiol group. Thiol groups can undergo oxidation/reduction (redox) reactions; when cysteine is oxidized it can form cystine, which is two cysteine residues joined by a disulfide bond. This reaction is reversible since the reduction of this disulphide bond regenerates two cysteine molecules. The disulphide bonds of cystine are crucial to defining the structures of many proteins. Cysteine is often involved in electron-transfer reactions, and help the enzyme catalyze its reaction. Cysteine is also part of the antioxidant glutathione. N-Acetyl-L-cysteine (NAC) is a form of cysteine where an acetyl group is attached to cysteine's nitrogen atom and is sold as a dietary supplement. Cysteine is named after cystine, which comes from the Greek word kustis meaning bladder (cystine was first isolated from kidney stones). Oxidation of cysteine can produce a disulfide bond with another thiol and further oxidation can produce sulphfinic or sulfonic acids. The cysteine thiol group is also a nucleophile and can undergo addition and substitution reactions. Thiol groups become much more reactive when they are ionized, and cysteine residues in proteins have pKa values close to neutrality, so they are often in their reactive thiolate form in the cell. The thiol group also has a high affinity for heavy metals and proteins containing cysteine will bind metals such as mercury, lead, and cadmium tightly. Due to this ability to undergo redox reactions, cysteine has antioxidant properties. Cysteine is an important source of sulfur in human metabolism, and although it is classified as a non-essential amino acid, cysteine may be essential for infants, the elderly, and individuals with certain metabolic disease or who suffer from malabsorption syndromes. Cysteine may at some point be recognized as an essential or conditionally essential amino acid (Wikipedia). Cysteine is important in energy metabolism. As cystine, it is a structural component of many tissues and hormones. Cysteine has clinical uses ranging from baldness to psoriasis to preventing smoker's hack. In some cases, oral cysteine therapy has proved excellent for treatment of asthmatics, enabling them to stop theophylline and other medications. Cysteine also enhances the effect of topically applied silver, tin, and zinc salts in preventing dental cavities. In the future, cysteine may play a role in the treatment of cobalt toxicity, diabetes, psychosis, cancer, and seizures (http://www.dcnutrition.com/AminoAcids/).</description>
            <cas>52-90-4</cas>
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            <drugbank-id>DB00151</drugbank-id>
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            <short-name>Cys</short-name>
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            <name>L-Glutamic acid</name>
            <hmdb-id>HMDB0000148</hmdb-id>
            <description>Glutamic acid (Glu), also referred to as glutamate (the anion), is one of the 20 proteinogenic amino acids. It is not among the essential amino acids. Glutamate is a key molecule in cellular metabolism. In humans, dietary proteins are broken down by digestion into amino acids, which serves as metabolic fuel or other functional roles in the body. Glutamate is the most abundant fast excitatory neurotransmitter in the mammalian nervous system. At chemical synapses, glutamate is stored in vesicles. Nerve impulses trigger release of glutamate from the pre-synaptic cell. In the opposing post-synaptic cell, glutamate receptors, such as the NMDA receptor, bind glutamate and are activated. Because of its role in synaptic plasticity, it is believed that glutamic acid is involved in cognitive functions like learning and memory in the brain. Glutamate transporters are found in neuronal and glial membranes. They rapidly remove glutamate from the extracellular space. In brain injury or disease, they can work in reverse and excess glutamate can accumulate outside cells. This process causes calcium ions to enter cells via NMDA receptor channels, leading to neuronal damage and eventual cell death, and is called excitotoxicity. The mechanisms of cell death include: * Damage to mitochondria from excessively high intracellular Ca2+. * Glu/Ca2+-mediated promotion of transcription factors for pro-apoptotic genes, or downregulation of transcription factors for anti-apoptotic genes. Excitotoxicity due to glutamate occurs as part of the ischemic cascade and is associated with stroke and diseases like amyotrophic lateral sclerosis, lathyrism, and Alzheimer's disease. glutamic acid has been implicated in epileptic seizures. Microinjection of glutamic acid into neurons produces spontaneous depolarization around one second apart, and this firing pattern is similar to what is known as paroxysmal depolarizing shift in epileptic attacks. This change in the resting membrane potential at seizure foci could cause spontaneous opening of voltage activated calcium channels, leading to glutamic acid release and further depolarization. (http://en.wikipedia.org/wiki/Glutamic_acid).</description>
            <cas>56-86-0</cas>
            <kegg-id>C00025</kegg-id>
            <pubchem-cid>33032</pubchem-cid>
            <chebi-id>16015</chebi-id>
            <biocyc-id>GLT</biocyc-id>
            <chemspider-id>30572</chemspider-id>
            <drugbank-id>DB00142</drugbank-id>
            <moldb-smiles>N[C@@H](CCC(O)=O)C(O)=O</moldb-smiles>
            <moldb-formula>C5H9NO4</moldb-formula>
            <moldb-inchi>InChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m0/s1</moldb-inchi>
            <moldb-inchikey>WHUUTDBJXJRKMK-VKHMYHEASA-N</moldb-inchikey>
            <moldb-iupac>(2S)-2-aminopentanedioic acid</moldb-iupac>
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            <moldb-alogps-logs>-0.26</moldb-alogps-logs>
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            <moldb-traditional-iupac>L-glutamic acid</moldb-traditional-iupac>
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            <drugbank-metabolite-id nil="true"/>
            <foodb-id>FDB012535</foodb-id>
            <synonyms>(2s)-2-aminopentanedioate;(2s)-2-aminopentanedioic acid;(s)-(+)-glutamate;(s)-(+)-glutamic acid;(s)-2-aminopentanedioate;(s)-2-aminopentanedioic acid;(s)-glutamate;(s)-glutamic acid;1-amino-propane-1,3-dicarboxylate;1-amino-propane-1,3-dicarboxylic acid;1-aminopropane-1,3-dicarboxylate;1-aminopropane-1,3-dicarboxylic acid;2-aminoglutarate;2-aminoglutaric acid;2-aminopentanedioate;2-aminopentanedioic acid;Aciglut;Aminoglutarate;Aminoglutaric acid;E;Glt;Glu;Glusate;Glut;Glutacid;Glutamicol;Glutamidex;Glutaminate;Glutaminic acid;Glutaminol;Glutaton;L-(+)-glutamate;L-(+)-glutamic acid;L-glu;L-glutamate;L-glutaminate;L-glutaminic acid;L-a-aminoglutarate;L-a-aminoglutaric acid;L-alpha-aminoglutarate;L-alpha-aminoglutaric acid;A-aminoglutarate;A-aminoglutaric acid;A-glutamate;A-glutamic acid;Alpha-aminoglutarate;Alpha-aminoglutaric acid;Alpha-glutamate;Alpha-glutamic acid;Acide glutamique;Acido glutamico;Acidum glutamicum;Glutamate;Glutamic acid;L-glutaminsaeure</synonyms>
            <pwc-id>PW_C000095</pwc-id>
            <short-name>Glu</short-name>
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              <element-state>
                <id type="integer">120086</id>
                <biological-state-id type="integer">407</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120347</id>
                <biological-state-id type="integer">406</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120692</id>
                <biological-state-id type="integer">126</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120816</id>
                <biological-state-id type="integer">418</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">121147</id>
                <biological-state-id type="integer">423</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">121153</id>
                <biological-state-id type="integer">424</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">121157</id>
                <biological-state-id type="integer">425</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">122833</id>
                <biological-state-id type="integer">119</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">122997</id>
                <biological-state-id type="integer">120</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123299</id>
                <biological-state-id type="integer">443</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123401</id>
                <biological-state-id type="integer">454</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123719</id>
                <biological-state-id type="integer">458</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123725</id>
                <biological-state-id type="integer">459</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123729</id>
                <biological-state-id type="integer">460</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125401</id>
                <biological-state-id type="integer">299</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125418</id>
                <biological-state-id type="integer">297</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125457</id>
                <biological-state-id type="integer">481</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125667</id>
                <biological-state-id type="integer">479</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125769</id>
                <biological-state-id type="integer">301</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125802</id>
                <biological-state-id type="integer">489</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">126941</id>
                <biological-state-id type="integer">388</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">126995</id>
                <biological-state-id type="integer">206</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">127162</id>
                <biological-state-id type="integer">501</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">127257</id>
                <biological-state-id type="integer">506</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">140738</id>
                <biological-state-id type="integer">84</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">140739</id>
                <biological-state-id type="integer">597</biological-state-id>
              </element-state>
            </element-states>
          </compound>
          <compound>
            <id type="integer">1056</id>
            <name>3-Mercaptopyruvic acid</name>
            <hmdb-id>HMDB0001368</hmdb-id>
            <description>3-Mercaptopyruvic acid is an intermediate in the metabolism of Cysteine. It is a substrate for L-lactate dehydrogenase A chain, 3-mercaptopyruvate sulfurtransferase, Aspartate aminotransferase (mitochondrial), L-lactate dehydrogenase C chain, L-lactate dehydrogenase A-like 6A, Aspartate aminotransferase (cytoplasmic), L-lactate dehydrogenase B chain and L-lactate dehydrogenase A-like 6B.</description>
            <cas>2464-23-5</cas>
            <kegg-id>C00957</kegg-id>
            <pubchem-cid>98</pubchem-cid>
            <chebi-id>16208</chebi-id>
            <biocyc-id>3-MERCAPTO-PYRUVATE</biocyc-id>
            <chemspider-id>96</chemspider-id>
            <drugbank-id nil="true"/>
            <moldb-smiles>OC(=O)C(=O)CS</moldb-smiles>
            <moldb-formula>C3H4O3S</moldb-formula>
            <moldb-inchi>InChI=1S/C3H4O3S/c4-2(1-7)3(5)6/h7H,1H2,(H,5,6)</moldb-inchi>
            <moldb-inchikey>OJOLFAIGOXZBCI-UHFFFAOYSA-N</moldb-inchikey>
            <moldb-iupac>2-oxo-3-sulfanylpropanoic acid</moldb-iupac>
            <moldb-average-mass>120.127</moldb-average-mass>
            <moldb-mono-mass>119.988114684</moldb-mono-mass>
            <moldb-alogps-logs>-1.12</moldb-alogps-logs>
            <moldb-donor-count>2</moldb-donor-count>
            <moldb-traditional-iupac>β-mercaptopyruvic acid</moldb-traditional-iupac>
            <moldb-formal-charge type="integer">0</moldb-formal-charge>
            <moldb-physiological-charge type="integer">-1</moldb-physiological-charge>
            <drugbank-metabolite-id nil="true"/>
            <foodb-id>FDB021862</foodb-id>
            <synonyms>3-mercapto-pyruvate;3-mercapto-pyruvic acid;3-mercaptopyruvate;3-mercaptopyruvic acid;Mercaptopyruvate;Mercaptopyruvic acid;Thiopyruvate;Beta-3-mercapto-2-oxo-propanoate;Beta-3-mercapto-2-oxo-propanoic acid;Beta-mercaptopyruvate;Beta-mercaptopyruvic acid;Beta-thiopyruvate;Beta-thiopyruvic acid;3-mercapto-2-oxopropanoic acid;3-mercapto-2-oxopropanoate</synonyms>
            <pwc-id>PW_C001056</pwc-id>
            <short-name>3McPyra</short-name>
            <element-states>
              <element-state>
                <id type="integer">715</id>
                <biological-state-id type="integer">8</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">77786</id>
                <biological-state-id type="integer">111</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120564</id>
                <biological-state-id type="integer">122</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123198</id>
                <biological-state-id type="integer">135</biological-state-id>
              </element-state>
            </element-states>
          </compound>
          <compound>
            <id type="integer">164</id>
            <name>Pyruvic acid</name>
            <hmdb-id>HMDB0000243</hmdb-id>
            <description>Pyruvic acid is an intermediate compound in the metabolism of carbohydrates, proteins, and fats. In thiamine deficiency, its oxidation is retarded and it accumulates in the tissues, especially in nervous structures. (From Stedman, 26th ed.) Biological Source: Intermediate in primary metabolism including fermentation processes. Present in muscle in redox equilibrium with Lactic acid. A common constituent, as a chiral cyclic acetal linked to saccharide residues, of bacterial polysaccharides. Isolated from cane sugar fermentation broth and peppermint. Constituent of Bauhinia purpurea, Cicer arietinum (chickpea), Delonix regia, Pisum sativum (pea) and Trigonella caerulea (sweet trefoil) Use/Importance: Reagent for regeneration of carbonyl compdounds from semicarbazones, phenylhydrazones and oximes. Flavoring ingredient (Dictionary of Organic Compounds).</description>
            <cas>127-17-3</cas>
            <kegg-id>C00022</kegg-id>
            <pubchem-cid>1060</pubchem-cid>
            <chebi-id>32816</chebi-id>
            <biocyc-id>PYRUVATE</biocyc-id>
            <chemspider-id>1031</chemspider-id>
            <drugbank-id>DB00119</drugbank-id>
            <moldb-smiles>CC(=O)C(O)=O</moldb-smiles>
            <moldb-formula>C3H4O3</moldb-formula>
            <moldb-inchi>InChI=1S/C3H4O3/c1-2(4)3(5)6/h1H3,(H,5,6)</moldb-inchi>
            <moldb-inchikey>LCTONWCANYUPML-UHFFFAOYSA-N</moldb-inchikey>
            <moldb-iupac>2-oxopropanoic acid</moldb-iupac>
            <moldb-average-mass>88.0621</moldb-average-mass>
            <moldb-mono-mass>88.016043994</moldb-mono-mass>
            <moldb-alogps-logs>0.18</moldb-alogps-logs>
            <moldb-donor-count>1</moldb-donor-count>
            <moldb-traditional-iupac>pyruvic acid</moldb-traditional-iupac>
            <moldb-formal-charge type="integer">0</moldb-formal-charge>
            <moldb-physiological-charge type="integer">-1</moldb-physiological-charge>
            <drugbank-metabolite-id nil="true"/>
            <foodb-id>FDB008293</foodb-id>
            <synonyms>2-oxopropanoate;2-oxopropanoic acid;2-oxopropionate;2-oxopropionic acid;Acetylformate;Acetylformic acid;Bts;Pyroracemate;Pyroracemic acid;Pyruvate;A-ketopropionate;A-ketopropionic acid;Alpha-ketopropionate;Alpha-ketopropionic acid;2-ketopropionic acid;2-oxopropansaeure;2-oxopropionsaeure;Acide pyruvique;Alpha-oxopropionsaeure;Brenztraubensaeure;Ch3cocooh;2-ketopropionate;α-ketopropionate;α-ketopropionic acid;A-oxopropionsaeure;α-oxopropionsaeure</synonyms>
            <pwc-id>PW_C000164</pwc-id>
            <short-name>Pyr</short-name>
            <element-states>
              <element-state>
                <id type="integer">17</id>
                <biological-state-id type="integer">2</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">20</id>
                <biological-state-id type="integer">4</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">422</id>
                <biological-state-id type="integer">8</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">1181</id>
                <biological-state-id type="integer">3</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">1449</id>
                <biological-state-id type="integer">50</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">1457</id>
                <biological-state-id type="integer">26</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5365</id>
                <biological-state-id type="integer">103</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5405</id>
                <biological-state-id type="integer">117</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5440</id>
                <biological-state-id type="integer">118</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5444</id>
                <biological-state-id type="integer">120</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5566</id>
                <biological-state-id type="integer">132</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5570</id>
                <biological-state-id type="integer">133</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5893</id>
                <biological-state-id type="integer">95</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5920</id>
                <biological-state-id type="integer">147</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">5951</id>
                <biological-state-id type="integer">151</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6022</id>
                <biological-state-id type="integer">155</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6067</id>
                <biological-state-id type="integer">156</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6074</id>
                <biological-state-id type="integer">161</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6126</id>
                <biological-state-id type="integer">160</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6383</id>
                <biological-state-id type="integer">1</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6467</id>
                <biological-state-id type="integer">178</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6510</id>
                <biological-state-id type="integer">177</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">6532</id>
                <biological-state-id type="integer">85</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">7457</id>
                <biological-state-id type="integer">222</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">7495</id>
                <biological-state-id type="integer">220</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">8200</id>
                <biological-state-id type="integer">225</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">12622</id>
                <biological-state-id type="integer">31</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">15292</id>
                <biological-state-id type="integer">249</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">15349</id>
                <biological-state-id type="integer">18</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">77310</id>
                <biological-state-id type="integer">111</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">77972</id>
                <biological-state-id type="integer">346</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">77978</id>
                <biological-state-id type="integer">327</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">78090</id>
                <biological-state-id type="integer">112</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">80004</id>
                <biological-state-id type="integer">368</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">80042</id>
                <biological-state-id type="integer">367</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">80695</id>
                <biological-state-id type="integer">135</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">112879</id>
                <biological-state-id type="integer">94</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">115683</id>
                <biological-state-id type="integer">121</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">119950</id>
                <biological-state-id type="integer">406</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120011</id>
                <biological-state-id type="integer">124</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120175</id>
                <biological-state-id type="integer">122</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120878</id>
                <biological-state-id type="integer">407</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">121148</id>
                <biological-state-id type="integer">423</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">121154</id>
                <biological-state-id type="integer">424</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123454</id>
                <biological-state-id type="integer">119</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123720</id>
                <biological-state-id type="integer">458</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123726</id>
                <biological-state-id type="integer">459</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125340</id>
                <biological-state-id type="integer">479</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125390</id>
                <biological-state-id type="integer">299</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125534</id>
                <biological-state-id type="integer">297</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">125854</id>
                <biological-state-id type="integer">481</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">126883</id>
                <biological-state-id type="integer">501</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">126931</id>
                <biological-state-id type="integer">388</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">127067</id>
                <biological-state-id type="integer">205</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">127858</id>
                <biological-state-id type="integer">206</biological-state-id>
              </element-state>
            </element-states>
          </compound>
          <compound>
            <id type="integer">1827</id>
            <name>Hydrogen sulfide</name>
            <hmdb-id>HMDB0003276</hmdb-id>
            <description>Hydrogen sulfide is a highly toxic and flammable gas. Because it is heavier than air it tends to accumulate at the bottom of poorly ventilated spaces. Although very pungent at first, it quickly deadens the sense of smell, so potential victims may be unaware of its presence until it is too late. H2S arises from virtually anywhere where elemental sulfur comes into contact with organic material, especially at high temperatures. Hydrogen sulfide is a covalent hydride chemically related to water (H2O) since oxygen and sulfur occur in the same periodic table group. It often results when bacteria break down organic matter in the absence of oxygen, such as in swamps, and sewers (alongside the process of anaerobic digestion). It also occurs in volcanic gases, natural gas and some well waters. It is also important to note that Hydrogen sulfide is a central participant in the sulfur cycle, the biogeochemical cycle of sulfur on Earth. As mentioned above, sulfur-reducing and sulfate-reducing bacteria derive energy from oxidizing hydrogen or organic molecules in the absence of oxygen by reducing sulfur or sulfate to hydrogen sulfide. Other bacteria liberate hydrogen sulfide from sulfur-containing amino acids. Several groups of bacteria can use hydrogen sulfide as fuel, oxidizing it to elemental sulfur or to sulfate by using oxygen or nitrate as oxidant. The purple sulfur bacteria and the green sulfur bacteria use hydrogen sulfide as electron donor in photosynthesis, thereby producing elemental sulfur. (In fact, this mode of photosynthesis is older than the mode of cyanobacteria, algae and plants which uses water as electron donor and liberates oxygen).</description>
            <cas>7783-06-4</cas>
            <kegg-id>C00283</kegg-id>
            <pubchem-cid>18779926</pubchem-cid>
            <chebi-id>16136</chebi-id>
            <biocyc-id>HS</biocyc-id>
            <chemspider-id>391</chemspider-id>
            <drugbank-id nil="true"/>
            <moldb-smiles>S</moldb-smiles>
            <moldb-formula>H2S</moldb-formula>
            <moldb-inchi>InChI=1S/H2S/h1H2</moldb-inchi>
            <moldb-inchikey>RWSOTUBLDIXVET-UHFFFAOYSA-N</moldb-inchikey>
            <moldb-iupac>hydrogen sulfide</moldb-iupac>
            <moldb-average-mass>34.081</moldb-average-mass>
            <moldb-mono-mass>33.987720754</moldb-mono-mass>
            <moldb-alogps-logs nil="true"/>
            <moldb-donor-count>1</moldb-donor-count>
            <moldb-traditional-iupac>hydrogen sulfide</moldb-traditional-iupac>
            <moldb-formal-charge type="integer">0</moldb-formal-charge>
            <moldb-physiological-charge type="integer">-1</moldb-physiological-charge>
            <drugbank-metabolite-id nil="true"/>
            <foodb-id>FDB009599</foodb-id>
            <synonyms>Acide sulfhydrique;Dihydrogen disulfide;Dihydrogen monosulfide;Dihydrogen sulfide;Hepatate;Hepatic acid;Hepatic gas;Hydrogen monosulfide;Hydrogen sulfide;Hydrogen-sulfide;Hydrogene sulfure;Hydrosulfurate;Hydrosulfuric acid;Idrogeno solforato;Schwefelwasserstoff;Sewer gas;Siarkowodor;Sour gas;Stink damp;Sulfur hydride;Sulfur hydroxide;Sulfureted hydrogen;Sulfuretted hydrogen;Zwavelwaterstof;[sh2];H2s;Hydrogen sulphide;Sulfide;Sulfure d'hydrogene;Acide sulphhydrique;Dihydrogen monosulphide;Dihydrogen sulphide;Hydrogen monosulphide;Hydrogen-sulphide;Hydrogene sulphure;Hydrosulfate;Hydrosulphate;Hydrosulphuric acid;Sulphide;Sulphure d'hydrogene</synonyms>
            <pwc-id>PW_C001827</pwc-id>
            <short-name>H2SO</short-name>
            <element-states>
              <element-state>
                <id type="integer">714</id>
                <biological-state-id type="integer">8</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">77785</id>
                <biological-state-id type="integer">111</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">120572</id>
                <biological-state-id type="integer">122</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">123206</id>
                <biological-state-id type="integer">135</biological-state-id>
              </element-state>
            </element-states>
          </compound>
          <compound>
            <id type="integer">414</id>
            <name>Adenosine triphosphate</name>
            <hmdb-id>HMDB0000538</hmdb-id>
            <description>Adenosine triphosphate (ATP) is a nucleotide consisting of a purine base (adenine) attached to the first carbon atom of ribose (a pentose sugar). Three phosphate groups are esterified at the fifth carbon atom of the ribose. ATP is incorporated into nucleic acids by polymerases in the processes of DNA replication and transcription. ATP contributes to cellular energy charge and participates in overall energy balance, maintaining cellular homeostasis. ATP can act as an extracellular signaling molecule via interactions with specific purinergic receptors to mediate a wide variety of processes as diverse as neurotransmission, inflammation, apoptosis, and bone remodelling. Extracellular ATP and its metabolite adenosine have also been shown to exert a variety of effects on nearly every cell type in human skin, and ATP seems to play a direct role in triggering skin inflammatory, regenerative, and fibrotic responses to mechanical injury, an indirect role in melanocyte proliferation and apoptosis, and a complex role in Langerhans cell-directed adaptive immunity. During exercise, intracellular homeostasis depends on the matching of adenosine triphosphate (ATP) supply and ATP demand. Metabolites play a useful role in communicating the extent of ATP demand to the metabolic supply pathways. Effects as different as proliferation or differentiation, chemotaxis, release of cytokines or lysosomal constituents, and generation of reactive oxygen or nitrogen species are elicited upon stimulation of blood cells with extracellular ATP. The increased concentration of adenosine triphosphate (ATP) in erythrocytes from patients with chronic renal failure (CRF) has been observed in many studies but the mechanism leading to these abnormalities still is controversial. (PMID: 15490415, 15129319, 14707763, 14696970, 11157473).</description>
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            <pubchem-cid>5957</pubchem-cid>
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            <biocyc-id>ATP</biocyc-id>
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            <drugbank-id>DB00171</drugbank-id>
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            <synonyms>5'-(tetrahydrogen triphosphate) adenosine;5'-atp;Atp;Adenosine 5'-triphosphate;Adenosine 5'-triphosphorate;Adenosine 5'-triphosphoric acid;Adenosine triphosphate;Adenylpyrophosphorate;Adenylpyrophosphoric acid;Adephos;Adetol;Adynol;Atipi;Atriphos;Cardenosine;Fosfobion;Glucobasin;Myotriphos;Phosphobion;Striadyne;Triadenyl;Triphosphaden;Triphosphoric acid adenosine ester;Adenosine-5'-triphosphate;H4atp;Adenosine triphosphoric acid;Adenosine-5'-triphosphoric acid</synonyms>
            <pwc-id>PW_C000414</pwc-id>
            <short-name>ATP</short-name>
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            <description>Adenosine diphosphate, abbreviated ADP, is a nucleotide. It is an ester of pyrophosphoric acid with the nucleotide adenine. ADP consists of the pyrophosphate group, the pentose sugar ribose, and the nucleobase adenine. ADP is the product of ATP dephosphorylation by ATPases. ADP is converted back to ATP by ATP synthases.</description>
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            <pwc-id>PW_C001034</pwc-id>
            <short-name>ADP</short-name>
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            <name>Phosphate</name>
            <hmdb-id>HMDB0001429</hmdb-id>
            <description>Phosphate is a salt of phosphoric acid. In organic chemistry, a phosphate, or organophosphate, is an ester of phosphoric acid. Organic phosphates are important in biochemistry, biogeochemistry and ecology. Phosphate (Pi) is an essential component of life. In biological systems, phosphorus is found as a free phosphate ion in solution and is called inorganic phosphate, to distinguish it from phosphates bound in various phosphate esters. Inorganic phosphate is generally denoted Pi and at physiological (neutral) pH primarily consists of a mixture of HPO&lt;sup&gt;2-&lt;/sup&gt;&lt;sub&gt;4&lt;/sub&gt; and H&lt;sub&gt;2&lt;/sub&gt;PO&lt;sup&gt;-&lt;/sup&gt;&lt;sub&gt;4&lt;/sub&gt; ions. phosphates are most commonly found in the form of adenosine phosphates, (AMP, ADP and ATP) and in DNA and RNA and can be released by the hydrolysis of ATP or ADP. Similar reactions exist for the other nucleoside diphosphates and triphosphates. Phosphoanhydride bonds in ADP and ATP, or other nucleoside diphosphates and triphosphates, contain high amounts of energy which give them their vital role in all living organisms. Phosphate must be actively transported into cells against its electrochemical gradient. In vertebrates, two unrelated families of Na+-dependent Pi transporters carry out this task. Remarkably, the two families transport different Pi species: whereas type II Na+/Pi cotransporters (SCL34) prefer divalent HPO4(2), type III Na+/Pi cotransporters (SLC20) transport monovalent H2PO4. The SCL34 family comprises both electrogenic and electroneutral members that are expressed in various epithelia and other polarized cells. Through regulated activity in apical membranes of the gut and kidney, they maintain body Pi homeostasis, and in salivary and mammary glands, liver, and testes they play a role in modulating the Pi content of luminal fluids. Phosphate levels in the blood play an important role in hormone signaling and in bone homeostasis. In classical endocrine regulation, low serum phosphate induces the renal production of the seco-steroid hormone 1,25-dihydroxyvitamin D3 (1,25(OH)2D3).This active metabolite of vitamin D acts to restore circulating mineral (i.e. phosphate and calcium) levels by increasing absorption in the intestine, reabsorption in the kidney, and mobilization of calcium and phosphate from bone. Thus, chronic renal failure is associated with hyperparathyroidism, which in turn contributes to osteomalacia (softening of the bones). Another complication of chronic renal failure is hyperphosphatemia (low levels of phosphate in the blood). Hyperphosphatemia (excess levels of phosphate in the blood) is a prevalent condition in kidney dialysis patients and is associated with increased risk of mortality. Hypophosphatemia (hungry bone syndrome) has been associated to postoperative electrolyte aberrations and after parathyroidectomy. (PMID: 17581921, 11169009, 11039261, 9159312, 17625581)Fibroblast growth factor 23 (FGF-23) has recently been recognized as a key mediator of phosphate homeostasis, its most notable effect being promotion of phosphate excretion. FGF-23 was discovered to be involved in diseases such as autosomal dominant hypophosphatemic rickets, X-linked hypophosphatemia, and tumor-induced osteomalacia in which phosphate wasting was coupled to inappropriately low levels of 1,25(OH)2D3. FGF-23 is regulated by dietary phosphate in humans. In particular it was found that phosphate restriction decreased FGF-23, and phosphate loading increased FGF-23.</description>
            <cas>14265-44-2</cas>
            <kegg-id>C00009</kegg-id>
            <pubchem-cid>1061</pubchem-cid>
            <chebi-id>18367</chebi-id>
            <biocyc-id>CPD-8587</biocyc-id>
            <chemspider-id>1032</chemspider-id>
            <drugbank-id></drugbank-id>
            <moldb-smiles>OP(O)(O)=O</moldb-smiles>
            <moldb-formula>H3O4P</moldb-formula>
            <moldb-inchi>InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)</moldb-inchi>
            <moldb-inchikey>NBIIXXVUZAFLBC-UHFFFAOYSA-N</moldb-inchikey>
            <moldb-iupac>phosphoric acid</moldb-iupac>
            <moldb-average-mass>97.9952</moldb-average-mass>
            <moldb-mono-mass>97.976895096</moldb-mono-mass>
            <moldb-alogps-logs nil="true"/>
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            <moldb-traditional-iupac>phosphoric acid</moldb-traditional-iupac>
            <moldb-formal-charge type="integer">0</moldb-formal-charge>
            <moldb-physiological-charge type="integer">-2</moldb-physiological-charge>
            <drugbank-metabolite-id>DBMET00532</drugbank-metabolite-id>
            <foodb-id>FDB022617</foodb-id>
            <synonyms>Nfb orthophosphate;O-phosphoric acid;Ortho-phosphate;Orthophosphate (po43-);Orthophosphate(3-);Phosphate;Phosphate (po43-);Phosphate anion(3-);Phosphate ion (po43-);Phosphate ion(3-);Phosphate trianion;Phosphate(3-);Phosphoric acid ion(3-);Pi;[po4](3-);Orthophosphate;Phosphate ion;Po4(3-);Phosphoric acid;Orthophosphoric acid;Phosphoric acid ion</synonyms>
            <pwc-id>PW_C001104</pwc-id>
            <short-name>Pi</short-name>
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                <biological-state-id type="integer">3747</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159295</id>
                <biological-state-id type="integer">3749</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159300</id>
                <biological-state-id type="integer">3751</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159305</id>
                <biological-state-id type="integer">3753</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159310</id>
                <biological-state-id type="integer">3755</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">199990</id>
                <biological-state-id type="integer">279</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200068</id>
                <biological-state-id type="integer">1814</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200157</id>
                <biological-state-id type="integer">1816</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200253</id>
                <biological-state-id type="integer">1818</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200347</id>
                <biological-state-id type="integer">1821</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200441</id>
                <biological-state-id type="integer">1823</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200535</id>
                <biological-state-id type="integer">1825</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200617</id>
                <biological-state-id type="integer">1827</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200697</id>
                <biological-state-id type="integer">1829</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200778</id>
                <biological-state-id type="integer">1831</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200861</id>
                <biological-state-id type="integer">723</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">200935</id>
                <biological-state-id type="integer">1862</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">201014</id>
                <biological-state-id type="integer">1864</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">201095</id>
                <biological-state-id type="integer">2028</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">201172</id>
                <biological-state-id type="integer">2125</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">201246</id>
                <biological-state-id type="integer">1782</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">201365</id>
                <biological-state-id type="integer">2352</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">202561</id>
                <biological-state-id type="integer">3889</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">202619</id>
                <biological-state-id type="integer">3891</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">202691</id>
                <biological-state-id type="integer">3895</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">202763</id>
                <biological-state-id type="integer">3925</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">203383</id>
                <biological-state-id type="integer">7840</biological-state-id>
              </element-state>
            </element-states>
          </protein>
          <protein>
            <id type="integer">6940</id>
            <name>Uncharacterized amino-acid ABC transporter ATP-binding protein yecC</name>
            <uniprot-id>P37774</uniprot-id>
            <description>Involved in nucleotide binding. Probably part of a binding-protein-dependent transport system yecCS for an amino acid. Probably responsible for energy coupling to the transport system.</description>
            <hmdbp-id nil="true"/>
            <gene-name>yecC</gene-name>
            <locus>b1917</locus>
            <drugbank-id nil="true"/>
            <genbank-id>AP009048</genbank-id>
            <species-id type="integer">3</species-id>
            <ec-numbers></ec-numbers>
            <synonyms nil="true"/>
            <element-states>
              <element-state>
                <id type="integer">6757</id>
                <biological-state-id type="integer">109</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159226</id>
                <biological-state-id type="integer">5002</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159231</id>
                <biological-state-id type="integer">5007</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159236</id>
                <biological-state-id type="integer">5012</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159241</id>
                <biological-state-id type="integer">5017</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159246</id>
                <biological-state-id type="integer">5022</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159251</id>
                <biological-state-id type="integer">5027</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159256</id>
                <biological-state-id type="integer">5032</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159261</id>
                <biological-state-id type="integer">5037</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159266</id>
                <biological-state-id type="integer">5042</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159271</id>
                <biological-state-id type="integer">5052</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159276</id>
                <biological-state-id type="integer">5057</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159281</id>
                <biological-state-id type="integer">5062</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159286</id>
                <biological-state-id type="integer">5067</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159291</id>
                <biological-state-id type="integer">5072</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159296</id>
                <biological-state-id type="integer">5077</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159301</id>
                <biological-state-id type="integer">5082</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159306</id>
                <biological-state-id type="integer">5087</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159311</id>
                <biological-state-id type="integer">5092</biological-state-id>
              </element-state>
            </element-states>
          </protein>
          <protein>
            <id type="integer">6941</id>
            <name>Inner membrane amino-acid ABC transporter permease protein yecS</name>
            <uniprot-id>P0AFT2</uniprot-id>
            <description>Involved in transporter activity. Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane.</description>
            <hmdbp-id nil="true"/>
            <gene-name>yecS</gene-name>
            <locus>b1918</locus>
            <drugbank-id nil="true"/>
            <genbank-id>AP009048</genbank-id>
            <species-id type="integer">3</species-id>
            <ec-numbers></ec-numbers>
            <synonyms nil="true"/>
            <element-states>
              <element-state>
                <id type="integer">6758</id>
                <biological-state-id type="integer">109</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159227</id>
                <biological-state-id type="integer">5002</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159232</id>
                <biological-state-id type="integer">5007</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159237</id>
                <biological-state-id type="integer">5012</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159242</id>
                <biological-state-id type="integer">5017</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159247</id>
                <biological-state-id type="integer">5022</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159252</id>
                <biological-state-id type="integer">5027</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159257</id>
                <biological-state-id type="integer">5032</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159262</id>
                <biological-state-id type="integer">5037</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159267</id>
                <biological-state-id type="integer">5042</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159272</id>
                <biological-state-id type="integer">5052</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159277</id>
                <biological-state-id type="integer">5057</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159282</id>
                <biological-state-id type="integer">5062</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159287</id>
                <biological-state-id type="integer">5067</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159292</id>
                <biological-state-id type="integer">5072</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159297</id>
                <biological-state-id type="integer">5077</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159302</id>
                <biological-state-id type="integer">5082</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159307</id>
                <biological-state-id type="integer">5087</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159312</id>
                <biological-state-id type="integer">5092</biological-state-id>
              </element-state>
            </element-states>
          </protein>
          <protein>
            <id type="integer">10376</id>
            <name> L-cystine ABC transporter - periplasmic binding protein</name>
            <uniprot-id>P0AEM9</uniprot-id>
            <description>FliY is the periplasmic binding protein of an L-cystine/L-cysteine ABC transport system in E. coli K-12. (EcoCyc)</description>
            <hmdbp-id nil="true"/>
            <gene-name>fliY</gene-name>
            <locus nil="true"/>
            <drugbank-id nil="true"/>
            <genbank-id nil="true"/>
            <species-id type="integer">25</species-id>
            <ec-numbers></ec-numbers>
            <synonyms nil="true"/>
            <element-states>
              <element-state>
                <id type="integer">6755</id>
                <biological-state-id type="integer">109</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">12017</id>
                <biological-state-id type="integer">234</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159228</id>
                <biological-state-id type="integer">5002</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159233</id>
                <biological-state-id type="integer">5007</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159238</id>
                <biological-state-id type="integer">5012</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159243</id>
                <biological-state-id type="integer">5017</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159248</id>
                <biological-state-id type="integer">5022</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159253</id>
                <biological-state-id type="integer">5027</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159258</id>
                <biological-state-id type="integer">5032</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159263</id>
                <biological-state-id type="integer">5037</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159268</id>
                <biological-state-id type="integer">5042</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159273</id>
                <biological-state-id type="integer">5052</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159278</id>
                <biological-state-id type="integer">5057</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159283</id>
                <biological-state-id type="integer">5062</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159288</id>
                <biological-state-id type="integer">5067</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159293</id>
                <biological-state-id type="integer">5072</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159298</id>
                <biological-state-id type="integer">5077</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159303</id>
                <biological-state-id type="integer">5082</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159308</id>
                <biological-state-id type="integer">5087</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159313</id>
                <biological-state-id type="integer">5092</biological-state-id>
              </element-state>
            </element-states>
          </protein>
          <protein>
            <id type="integer">28276</id>
            <name>Unknown</name>
            <uniprot-id>Unknown</uniprot-id>
            <description nil="true"/>
            <hmdbp-id nil="true"/>
            <gene-name nil="true"/>
            <locus nil="true"/>
            <drugbank-id nil="true"/>
            <genbank-id nil="true"/>
            <species-id type="integer">1171</species-id>
            <ec-numbers></ec-numbers>
            <synonyms nil="true"/>
            <element-states>
              <element-state>
                <id type="integer">151281</id>
                <biological-state-id type="integer">3751</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">152310</id>
                <biological-state-id type="integer">5080</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">152311</id>
                <biological-state-id type="integer">5082</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">153415</id>
                <biological-state-id type="integer">6909</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">153965</id>
                <biological-state-id type="integer">5081</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">155724</id>
                <biological-state-id type="integer">5078</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">157910</id>
                <biological-state-id type="integer">7545</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">159471</id>
                <biological-state-id type="integer">3752</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">161178</id>
                <biological-state-id type="integer">7964</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">162271</id>
                <biological-state-id type="integer">8562</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">217320</id>
                <biological-state-id type="integer">9875</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">239853</id>
                <biological-state-id type="integer">10791</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">243590</id>
                <biological-state-id type="integer">9439</biological-state-id>
              </element-state>
              <element-state>
                <id type="integer">243593</id>
                <biological-state-id type="integer">11229</biological-state-id>
              </element-state>
            </element-states>
          </protein>
        </proteins>
        <protein-complexes>
          <protein-complex>
            <id type="integer">65731</id>
            <name>aspartate transaminase</name>
            <species-id type="integer">1171</species-id>
            <pwp-id>PW_P065731</pwp-id>
            <protein_complex-proteins>
              <protein-complex-protein>
                <id type="integer">77656</id>
                <protein-id type="integer">28276</protein-id>
                <stoichiometry type="integer">2</stoichiometry>
              </protein-complex-protein>
            </protein_complex-proteins>
          </protein-complex>
          <protein-complex>
            <id type="integer">65732</id>
            <name>hydrogen sulfide synthesis</name>
            <species-id type="integer">1171</species-id>
            <pwp-id>PW_P065732</pwp-id>
            <protein_complex-proteins>
              <protein-complex-protein>
                <id type="integer">77657</id>
                <protein-id type="integer">28276</protein-id>
                <stoichiometry type="integer">1</stoichiometry>
              </protein-complex-protein>
            </protein_complex-proteins>
          </protein-complex>
          <protein-complex>
            <id type="integer">65733</id>
            <name>L-cysteine ABC transporter</name>
            <species-id type="integer">1171</species-id>
            <pwp-id>PW_P065733</pwp-id>
            <protein_complex-proteins>
              <protein-complex-protein>
                <id type="integer">77658</id>
                <protein-id type="integer">28276</protein-id>
                <stoichiometry type="integer">1</stoichiometry>
              </protein-complex-protein>
            </protein_complex-proteins>
          </protein-complex>
        </protein-complexes>
        <reactions>
          <reaction>
            <id type="integer">510746</id>
            <spontaneous type="boolean">false</spontaneous>
            <pwr-id>PW_R510746</pwr-id>
            <direction>Right</direction>
            <reaction-left-elements>
              <reaction-left-element>
                <id type="integer">2059202</id>
                <element-id type="integer">134</element-id>
                <stoichiometry type="integer">1</stoichiometry>
                <element-type>Compound</element-type>
                <currency type="boolean">false</currency>
              </reaction-left-element>
              <reaction-left-element>
                <id type="integer">2059203</id>
                <element-id type="integer">448</element-id>
                <stoichiometry type="integer">1</stoichiometry>
                <element-type>Compound</element-type>
                <currency type="boolean">false</currency>
              </reaction-left-element>
            </reaction-left-elements>
            <reaction-right-elements>
              <reaction-right-element>
                <id type="integer">2059204</id>
                <element-id type="integer">95</element-id>
                <stoichiometry type="integer">1</stoichiometry>
                <element-type>Compound</element-type>
                <currency type="boolean">false</currency>
              </reaction-right-element>
              <reaction-right-element>
                <id type="integer">2059205</id>
                <element-id type="integer">1056</element-id>
                <stoichiometry type="integer">1</stoichiometry>
                <element-type>Compound</element-type>
                <currency type="boolean">false</currency>
              </reaction-right-element>
            </reaction-right-elements>
            <reaction-enzymes>
              <reaction-enzyme>
                <id type="integer">499468</id>
                <protein-complex-id type="integer">65731</protein-complex-id>
                <enzyme-class nil="true"/>
              </reaction-enzyme>
            </reaction-enzymes>
          </reaction>
          <reaction>
            <id type="integer">510747</id>
            <spontaneous type="boolean">false</spontaneous>
            <pwr-id>PW_R510747</pwr-id>
            <direction>Right</direction>
            <reaction-left-elements>
              <reaction-left-element>
                <id type="integer">2059206</id>
                <element-id type="integer">1056</element-id>
                <stoichiometry type="integer">1</stoichiometry>
                <element-type>Compound</element-type>
                <currency type="boolean">false</currency>
              </reaction-left-element>
            </reaction-left-elements>
            <reaction-right-elements>
              <reaction-right-element>
                <id type="integer">2059207</id>
                <element-id type="integer">164</element-id>
                <stoichiometry type="integer">1</stoichiometry>
                <element-type>Compound</element-type>
                <currency type="boolean">false</currency>
              </reaction-right-element>
              <reaction-right-element>
                <id type="integer">2059208</id>
                <element-id type="integer">1827</element-id>
                <stoichiometry type="integer">1</stoichiometry>
                <element-type>Compound</element-type>
                <currency type="boolean">false</currency>
              </reaction-right-element>
            </reaction-right-elements>
            <reaction-enzymes>
              <reaction-enzyme>
                <id type="integer">499469</id>
                <protein-complex-id type="integer">65732</protein-complex-id>
                <enzyme-class>2.8.1.2</enzyme-class>
              </reaction-enzyme>
            </reaction-enzymes>
          </reaction>
        </reactions>
        <reaction-coupled-transports>
          <reaction-coupled-transport>
            <id type="integer">3910</id>
            <pwrct-id>PW_RCT003910</pwrct-id>
            <direction>Right</direction>
            <reaction-coupled-transport-left-elements>
              <reaction-coupled-transport-left-element>
                <id type="integer">24100</id>
                <reaction-coupled-transport-id type="integer">3910</reaction-coupled-transport-id>
                <element-id type="integer">448</element-id>
                <element-type>Compound</element-type>
                <stoichiometry type="integer">1</stoichiometry>
                <biological-state-id type="integer">5079</biological-state-id>
              </reaction-coupled-transport-left-element>
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                <id type="integer">9734320</id>
                <compound-location-id type="integer">8251422</compound-location-id>
                <edge-id type="integer">11065470</edge-id>
                <side>Left</side>
              </reaction-compound-visualization>
              <reaction-compound-visualization>
                <id type="integer">9734321</id>
                <compound-location-id type="integer">8251423</compound-location-id>
                <edge-id type="integer">11065471</edge-id>
                <side>Right</side>
              </reaction-compound-visualization>
              <reaction-compound-visualization>
                <id type="integer">9734322</id>
                <compound-location-id type="integer">8251424</compound-location-id>
                <edge-id type="integer">11065472</edge-id>
                <side>Right</side>
              </reaction-compound-visualization>
            </reaction_compound_visualizations>
            <reaction_enzyme_visualizations>
              <reaction-enzyme-visualization>
                <id type="integer">2318030</id>
                <reaction-enzyme-id type="integer">499468</reaction-enzyme-id>
                <protein-complex-visualization-id type="integer">2443424</protein-complex-visualization-id>
              </reaction-enzyme-visualization>
            </reaction_enzyme_visualizations>
          </reaction-visualization>
          <reaction-visualization>
            <id type="integer">2375032</id>
            <pathway-visualization-id type="integer">359445</pathway-visualization-id>
            <reaction-id type="integer">510747</reaction-id>
            <biological-state-id type="integer" nil="true"/>
            <reaction_compound_visualizations>
              <reaction-compound-visualization>
                <id type="integer">9734323</id>
                <compound-location-id type="integer">8251424</compound-location-id>
                <edge-id type="integer">11065474</edge-id>
                <side>Left</side>
              </reaction-compound-visualization>
              <reaction-compound-visualization>
                <id type="integer">9734324</id>
                <compound-location-id type="integer">8251425</compound-location-id>
                <edge-id type="integer">11065475</edge-id>
                <side>Right</side>
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              <reaction-compound-visualization>
                <id type="integer">9734325</id>
                <compound-location-id type="integer">8251426</compound-location-id>
                <edge-id type="integer">11065476</edge-id>
                <side>Right</side>
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            </reaction_compound_visualizations>
            <reaction_enzyme_visualizations>
              <reaction-enzyme-visualization>
                <id type="integer">2318032</id>
                <reaction-enzyme-id type="integer">499469</reaction-enzyme-id>
                <protein-complex-visualization-id type="integer">2443426</protein-complex-visualization-id>
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        <reaction-coupled-transport_visualizations>
          <reaction-coupled-transport-visualization>
            <id type="integer">8299</id>
            <reaction-coupled-transport-id type="integer">3910</reaction-coupled-transport-id>
            <pathway-visualization-id type="integer">359445</pathway-visualization-id>
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                <id type="integer">44599</id>
                <compound-location-id type="integer">8251422</compound-location-id>
                <edge-id type="integer">11065477</edge-id>
                <side>Left</side>
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              <reaction-coupled-transport-compound-visualization>
                <id type="integer">44600</id>
                <compound-location-id type="integer">8251428</compound-location-id>
                <edge-id type="integer">11065478</edge-id>
                <side>Left</side>
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              <reaction-coupled-transport-compound-visualization>
                <id type="integer">44601</id>
                <compound-location-id type="integer">8251429</compound-location-id>
                <edge-id type="integer">11065479</edge-id>
                <side>Left</side>
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              <reaction-coupled-transport-compound-visualization>
                <id type="integer">44602</id>
                <compound-location-id type="integer">8251430</compound-location-id>
                <edge-id type="integer">11065480</edge-id>
                <side>Right</side>
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              <reaction-coupled-transport-compound-visualization>
                <id type="integer">44603</id>
                <compound-location-id type="integer">8251431</compound-location-id>
                <edge-id type="integer">11065481</edge-id>
                <side>Right</side>
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              <reaction-coupled-transport-compound-visualization>
                <id type="integer">44604</id>
                <compound-location-id type="integer">8251432</compound-location-id>
                <edge-id type="integer">11065482</edge-id>
                <side>Right</side>
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              <reaction-coupled-transport-compound-visualization>
                <id type="integer">44605</id>
                <compound-location-id type="integer">8251433</compound-location-id>
                <edge-id type="integer">11065483</edge-id>
                <side>Right</side>
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            <reaction_coupled_transport_enzyme_visualizations>
              <reaction-coupled-transport-enzyme-visualization>
                <id type="integer">8169</id>
                <protein-complex-visualization-id type="integer">2443427</protein-complex-visualization-id>
                <reaction-coupled-transport-enzyme-id type="integer">3972</reaction-coupled-transport-enzyme-id>
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        <interaction-visualizations>
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          <sub-pathway-visualization>
            <id type="integer">356354</id>
            <sub-pathway-id type="integer">356133</sub-pathway-id>
            <pathway-visualization-id type="integer">359445</pathway-visualization-id>
            <visualization-template-id type="integer">14</visualization-template-id>
            <hidden type="boolean">false</hidden>
            <x type="integer">1892</x>
            <y type="integer">1416</y>
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              <sub-pathway-compound-visualization>
                <id type="integer">350150</id>
                <compound-location-id type="integer">8251426</compound-location-id>
                <edge-id type="integer">11065484</edge-id>
                <side>Left</side>
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        <vacuous-compound-visualizations>
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        <vacuous-nucleic-acid-visualizations>
        </vacuous-nucleic-acid-visualizations>
        <vacuous-element-collection-visualizations>
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        <vacuous-protein-visualizations>
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            <visualization-template-id type="integer" nil="true"/>
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            <y type="integer">1196</y>
            <scale-x type="decimal">1.1</scale-x>
            <scale-y type="decimal">1.1</scale-y>
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            <zindex type="integer">2</zindex>
            <drawable-image-id type="integer">92</drawable-image-id>
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            <visualization-template-id type="integer" nil="true"/>
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            <y type="integer">1110</y>
            <scale-x type="decimal">0.9</scale-x>
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            <height>512</height>
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          <membrane-visualization>
            <id type="integer">1163312</id>
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          <membrane-visualization>
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            <path>M976 526 C976 476 1026 426 1076 426 C1515 426 2087 426 2526 426 C2576 426 2626 476 2626 526 C2626 904 2626 1396 2626 1774 C2626 1824 2576 1874 2526 1874 C2087 1874 1515 1874 1076 1874 C1026 1874 976 1824 976 1774 C976 1396 976 904 976 526 </path>
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            <complete-membrane type="boolean">true</complete-membrane>
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            <id type="integer">2077514</id>
            <visualization-template-id type="integer">235</visualization-template-id>
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            <scale-y type="decimal">1.6</scale-y>
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            <height>15</height>
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          <label-location>
            <id type="integer">2077516</id>
            <visualization-template-id type="integer">235</visualization-template-id>
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            <y type="integer">205</y>
            <zindex type="integer">20</zindex>
            <scale-x type="decimal">1.6</scale-x>
            <scale-y type="decimal">1.6</scale-y>
            <width>200</width>
            <height>15</height>
          </label-location>
          <label-location>
            <id type="integer">2077517</id>
            <visualization-template-id type="integer">235</visualization-template-id>
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            <zindex type="integer">20</zindex>
            <scale-x type="decimal">1.6</scale-x>
            <scale-y type="decimal">1.6</scale-y>
            <width>200</width>
            <height>15</height>
          </label-location>
          <label-location>
            <id type="integer">2077518</id>
            <visualization-template-id type="integer">235</visualization-template-id>
            <label-text>Outer Membrane</label-text>
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            <scale-x type="decimal">1.6</scale-x>
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          <label-location>
            <id type="integer">2077519</id>
            <visualization-template-id type="integer">235</visualization-template-id>
            <label-text>Plasmid</label-text>
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            <scale-y type="decimal">1.6</scale-y>
            <width>200</width>
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        <zoom-visualizations>
          <zoom-visualization>
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            <p2x type="integer">651</p2x>
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            <p3x type="integer">2950</p3x>
            <p3y type="integer">2203</p3y>
            <visualization-template-id type="integer">39</visualization-template-id>
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            <label></label>
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            <height>2101</height>
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</super-pathway-visualization>
