Glycolic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Glycolic acid

Serine Biosynthesis and Metabolism
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway429169
pathway component: SubPathwayInteraction429169
xref: Reference/PathWhiz PW000809
xref: Reference/SMPDB SMP0000829
name: SubPathway

Reference/PubChem-compound 6022
type: UnificationXref
id: 6022
db: PubChem-compound

Allantoic acid
type: SmallMoleculeReference
xref: Reference/PubChem-compound 203
xref: Reference/ChemSpider 198
xref: Reference/HMDB HMDB0001209
xref: Reference/CAS 99-16-1
xref: Reference/BioCyc ALLANTOATE
xref: Reference/ChEBI CHEBI 30837
xref: Reference/KEGG Compound C00499
chemical formula: C4H8N4O4
molecular weight: 176.05455
structure: ChemicalStructure/PW C000941

Acetyl-CoA
type: SmallMoleculeReference
xref: Reference/BioCyc ACETYL-COA
xref: Reference/PubChem-compound 444493
xref: Reference/HMDB HMDB0001206
xref: Reference/ChemSpider 392413
xref: Reference/CAS 72-89-9
xref: Reference/ChEBI CHEBI 15351
xref: Reference/KEGG Compound C00024
chemical formula: C23H38N7O17P3S
molecular weight: 809.1258
structure: ChemicalStructure/PW C000940

Reference/ChemSpider 937
type: UnificationXref
id: 937
db: ChemSpider

Transport58348
type: Transport
participant stoichiometry: Compound/PW C040970 Periplasmic Space/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040970 Extracellular Space/Stoichiometry/1.0
right: (S)-(+)-allantoin
spontaneous: false
left: (S)-(+)-allantoin
name: (S)-(+)-allantoin (→) Transport: Escherichia coli O127:H6 str. E2348/69, Extracellular Space to Escherichia coli O127:H6 str. E2348/69, Periplasmic Space
conversion direction: LEFT_TO_RIGHT

Reference/ChEBI CHEBI 30797
type: UnificationXref
id: CHEBI:30797
db: ChEBI

Transport58340
type: Transport
participant stoichiometry: Compound/PW C000073 Periplasmic Space/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Periplasmic Space/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000073 Cytosol/Stoichiometry/1.0
right: Glycolic acid
right: Hydrogen Ion
spontaneous: false
left: Hydrogen Ion
left: Glycolic acid
name: Glycolic acid (→), Hydrogen Ion (→) Transport: Escherichia coli O127:H6 str. E2348/69, Periplasmic Space to Escherichia coli O127:H6 str. E2348/69, Cytosol
conversion direction: LEFT_TO_RIGHT

Transport58341
type: Transport
participant stoichiometry: Compound/PW C040970 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040970 Periplasmic Space/Stoichiometry/1.0
right: (S)-(+)-allantoin
spontaneous: false
left: (S)-(+)-allantoin
name: (S)-(+)-allantoin (→) Transport: Escherichia coli O127:H6 str. E2348/69, Periplasmic Space to Escherichia coli O127:H6 str. E2348/69, Cytosol
conversion direction: LEFT_TO_RIGHT

Transport58342
type: Transport
participant stoichiometry: Compound/PW C000075 Periplasmic Space/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000075 Cytosol/Stoichiometry/1.0
right: Glyoxylic acid
spontaneous: false
left: Glyoxylic acid
name: Glyoxylic acid (→) Transport: Escherichia coli O127:H6 str. E2348/69, Periplasmic Space to Escherichia coli O127:H6 str. E2348/69, Cytosol
conversion direction: LEFT_TO_RIGHT

Transport58343
type: Transport
participant stoichiometry: Compound/PW C000352 Periplasmic Space/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000352 Cytosol/Stoichiometry/1.0
right: Allantoin
spontaneous: false
left: Allantoin
name: Allantoin (→) Transport: Escherichia coli O127:H6 str. E2348/69, Periplasmic Space to Escherichia coli O127:H6 str. E2348/69, Cytosol
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 439153
type: UnificationXref
id: 439153
db: PubChem-compound

Transport58345
type: Transport
participant stoichiometry: Compound/PW C000073 Periplasmic Space/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000073 Cytosol/Stoichiometry/1.0
right: Glycolic acid
spontaneous: false
left: Glycolic acid
name: Glycolic acid (→) Transport: Escherichia coli O127:H6 str. E2348/69, Periplasmic Space to Escherichia coli O127:H6 str. E2348/69, Cytosol
conversion direction: LEFT_TO_RIGHT

ChemicalStructure/PW C001420
type: ChemicalStructure
structure format: SMILES
structure data: O

Reference/CAS 57-13-6
type: UnificationXref
id: 57-13-6
db: CAS

Escherichia coli O127:H6 str. E2348/69
type: BioSource
xref: Reference/TAXONOMY 574521

Reference/TAXONOMY 574521
type: UnificationXref
id: 574521
db: TAXONOMY

Compound/PW C040034/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Reference/CAS 473-81-4
type: UnificationXref
id: 473-81-4
db: CAS

(S)-(+)-allantoin
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15678
chemical formula: C4H6N4O3
molecular weight: 158.04399
structure: ChemicalStructure/PW C040970

Reduced acceptor
type: SmallMolecule
entity reference: Reduced acceptor

Reference/HMDB HMDB0000538
type: UnificationXref
id: HMDB0000538
db: HMDB

Reference/CAS 7424-03-5
type: UnificationXref
id: 7424-03-5
db: CAS

Compound/PW C000101/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Malic acid
stoichiometric coefficient: 1.0

Reference/BioCyc ATP
type: UnificationXref
id: ATP
db: BioCyc

Unknown
type: Protein
cellular location: Cytosol
entity reference: Unknown

Reference/PubChem-compound 1122
type: UnificationXref
id: 1122
db: PubChem-compound

Ammonium
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0041827
xref: Reference/CAS 14798-03-9
xref: Reference/PubChem-compound 16741146
xref: Reference/KEGG Compound C01342
xref: Reference/ChEBI CHEBI 28938
xref: Reference/ChemSpider 218
chemical formula: H4N
molecular weight: 18.034374
structure: ChemicalStructure/PW C022608

Reference/PubChem-compound 439269
type: UnificationXref
id: 439269
db: PubChem-compound

Reference/PubChem-compound 6816
type: UnificationXref
id: 6816
db: PubChem-compound

ChemicalStructure/PW C000101
type: ChemicalStructure
structure format: SMILES
structure data: O[C@@H](CC(O)=O)C(O)=O

Reference/ChEBI CHEBI 15846
type: UnificationXref
id: CHEBI:15846
db: ChEBI

Reference/BioCyc ADP
type: UnificationXref
id: ADP
db: BioCyc

Reference/ChemSpider 388334
type: UnificationXref
id: 388334
db: ChemSpider

Compound/PW C000940/Stoichiometry/1.0
type: Stoichiometry
physical entity: Acetyl-CoA
stoichiometric coefficient: 1.0

NADH
type: SmallMolecule
cellular location: Cytosol
entity reference: NADH

Reference/ChemSpider 5742
type: UnificationXref
id: 5742
db: ChemSpider

Reference/PubChem-compound 1038
type: UnificationXref
id: 1038
db: PubChem-compound

Compound/PW C000073/Stoichiometry/2.0
type: Stoichiometry
physical entity: Glycolic acid
stoichiometric coefficient: 2.0

Reference/ChemSpider 1143
type: UnificationXref
id: 1143
db: ChemSpider

Reference/ChEBI CHEBI 15022
type: UnificationXref
id: CHEBI:15022
db: ChEBI

Reference/CAS 79-14-1
type: UnificationXref
id: 79-14-1
db: CAS

Reference/GENE ONTOLOGY GO 0005829
type: UnificationXref
id: GO:0005829
db: GENE ONTOLOGY

Reference/SMPDB SMP0412632
type: UnificationXref
id: SMP0412632
db: SMPDB

ChemicalStructure/PW C000795
type: ChemicalStructure
structure format: SMILES
structure data: NC(=O)N[C@@H](O)C(O)=O

Allantoin
type: SmallMolecule
cellular location: Periplasmic Space
entity reference: Allantoin

Reference/ChemSpider 274
type: UnificationXref
id: 274
db: ChemSpider

Reference/BioCyc UREA
type: UnificationXref
id: UREA
db: BioCyc

Reference/CAS 97-67-6
type: UnificationXref
id: 97-67-6
db: CAS

Reference/ChEBI CHEBI 16908
type: UnificationXref
id: CHEBI:16908
db: ChEBI

Reference/ChEBI CHEBI 32398
type: UnificationXref
id: CHEBI:32398
db: ChEBI

Acetyl-CoA
type: SmallMolecule
entity reference: Acetyl-CoA

Reference/KEGG Compound C01551
type: UnificationXref
id: C01551
db: KEGG Compound

acetate / glycolate transporter
type: Complex
component stoichiometry: Protein/28267/Stoichiometry/2.0
component: Unknown

Reference/ChemSpider 704
type: UnificationXref
id: 704
db: ChemSpider

Reference/ChemSpider 1010
type: UnificationXref
id: 1010
db: ChemSpider

Compound/PW C000644 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: 3-Phosphoglyceric acid
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001099
type: ChemicalStructure
structure format: SMILES

SubPathwayInteraction429170
type: Interaction
name: SubPathwayReaction
name: SubPathway429170Reaction
participant: 3-Phosphoglyceric acid

SubPathwayInteraction429171
type: Interaction
name: SubPathway429171Reaction
name: SubPathwayReaction
participant: 3-Phosphoglyceric acid

SubPathwayInteraction429172
type: Interaction
name: SubPathway429172Reaction
name: SubPathwayReaction
participant: L-Malic acid

(S)-Ureidoglycolic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: (S)-Ureidoglycolic acid

ChemicalStructure/PW C000200
type: ChemicalStructure
structure format: SMILES
structure data: NC(N)=O

Compound/PW C000075/Stoichiometry/2.0
type: Stoichiometry
physical entity: Glyoxylic acid
stoichiometric coefficient: 2.0

Compound/PW C003011/Stoichiometry/1.0
type: Stoichiometry
physical entity: Tartronate semialdehyde
stoichiometric coefficient: 1.0

Reference/PubChem-compound 203
type: UnificationXref
id: 203
db: PubChem-compound

(S)-(+)-allantoin
type: SmallMolecule
cellular location: Cytosol
entity reference: (S)-(+)-allantoin

Unknown
type: Protein
entity reference: Unknown

Reference/PubChem-compound 204
type: UnificationXref
id: 204
db: PubChem-compound

Compound/PW C000414 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine triphosphate
stoichiometric coefficient: 1.0

Hydrogen Ion
type: SmallMolecule
entity reference: Hydrogen Ion

Reference/PathWhiz PW000785
type: UnificationXref
id: PW000785
db: PathWhiz

Compound/PW C000075 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glyoxylic acid
stoichiometric coefficient: 1.0

Carbon dioxide
type: SmallMolecule
cellular location: Cytosol
entity reference: Carbon dioxide

Protein/28267/Stoichiometry/2.0
type: Stoichiometry
physical entity: Unknown
stoichiometric coefficient: 2.0

Cytosol
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005829

Glyceric acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Glyceric acid

glyoxylate carboligase
type: Complex
component stoichiometry: Protein/28267/Stoichiometry/2.0
component: Unknown

Compound/PW C001144 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADH
stoichiometric coefficient: 1.0

Reference/ChemSpider 218
type: UnificationXref
id: 218
db: ChemSpider

Reference/ChEBI CHEBI 5086
type: UnificationXref
id: CHEBI:5086
db: ChEBI

Reference/KEGG Compound C00597
type: UnificationXref
id: C00597
db: KEGG Compound

Reference/CAS 58-68-4
type: UnificationXref
id: 58-68-4
db: CAS

Reference/HMDB HMDB0001423
type: UnificationXref
id: HMDB0001423
db: HMDB

Reaction852821
type: BiochemicalReaction
participant stoichiometry: Compound/Generic40/Stoichiometry/2.0
participant stoichiometry: Compound/PW C000075/Stoichiometry/2.0
participant stoichiometry: Compound/PW C000073/Stoichiometry/2.0
participant stoichiometry: Compound/Generic161/Stoichiometry/2.0
right: Glyoxylic acid
right: Reduced acceptor
spontaneous: false
left: Glycolic acid
left: an oxidized electron-transfer flavoprotein
name: 2 Glycolic acid + 2 an oxidized electron-transfer flavoprotein → 2 Glyoxylic acid + 2 Reduced acceptor
conversion direction: LEFT_TO_RIGHT

2.3.3.9
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001420/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001099/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000075/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000940/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000101/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034/Stoichiometry/1.0
right: Coenzyme A
right: L-Malic acid
right: Hydrogen Ion
spontaneous: false
EC number: 2.3.3.9
left: Glyoxylic acid
left: Water
left: Acetyl-CoA
name: Acetyl-CoA + Glyoxylic acid + Water → Coenzyme A + Hydrogen Ion + L-Malic acid
conversion direction: LEFT_TO_RIGHT

4.3.2.3
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000200/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000075/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000795/Stoichiometry/1.0
right: Glyoxylic acid
right: Urea
spontaneous: false
EC number: 4.3.2.3
left: (S)-Ureidoglycolic acid
name: (S)-Ureidoglycolic acid → Glyoxylic acid + Urea
conversion direction: LEFT_TO_RIGHT

4.1.1.47
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001316/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000075/Stoichiometry/2.0
participant stoichiometry: Compound/PW C040034/Stoichiometry/1.0
participant stoichiometry: Compound/PW C003011/Stoichiometry/1.0
right: Tartronate semialdehyde
right: Carbon dioxide
spontaneous: false
EC number: 4.1.1.47
left: Glyoxylic acid
left: Hydrogen Ion
name: 2 Glyoxylic acid + Hydrogen Ion → Carbon dioxide + Tartronate semialdehyde
conversion direction: LEFT_TO_RIGHT

Reference/CAS 124-38-9
type: UnificationXref
id: 124-38-9
db: CAS

Reference/PathWhiz PW000779
type: UnificationXref
id: PW000779
db: PathWhiz

SubPathwayInteraction429169
type: Interaction
name: SubPathway429169Reaction
name: SubPathwayReaction
participant: 3-Phosphoglyceric acid

Glyoxylic acid
type: SmallMoleculeReference
xref: Reference/BioCyc GLYOX
xref: Reference/ChemSpider 740
xref: Reference/CAS 298-12-4
xref: Reference/HMDB HMDB0000119
xref: Reference/PubChem-compound 760
xref: Reference/ChEBI CHEBI 16891
xref: Reference/KEGG Compound C00048
chemical formula: C2H2O3
molecular weight: 74.0004
structure: ChemicalStructure/PW C000075

Glycolic acid
type: SmallMoleculeReference
xref: Reference/CAS 79-14-1
xref: Reference/HMDB HMDB0000115
xref: Reference/KEGG Compound C00160
xref: Reference/BioCyc GLYCOLLATE
xref: Reference/ChemSpider 737
xref: Reference/ChEBI CHEBI 17497
xref: Reference/PubChem-compound 3698251
chemical formula: C2H4O3
molecular weight: 76.016045
structure: ChemicalStructure/PW C000073

Reference/KEGG Compound C00008
type: UnificationXref
id: C00008
db: KEGG Compound

Reference/ChEBI CHEBI 15412
type: UnificationXref
id: CHEBI:15412
db: ChEBI

Hydrogen Ion
type: SmallMolecule
cellular location: Cytosol
entity reference: Hydrogen Ion

ReactionCatalysis859640
type: Catalysis
controller: tartronate semialdehyde reductase 2
controlled: 1.1.1.60
control type: ACTIVATION

Reference/PubChem-compound 439194
type: UnificationXref
id: 439194
db: PubChem-compound

Reference/KEGG Compound C00001
type: UnificationXref
id: C00001
db: KEGG Compound

3-Phosphoglyceric acid
type: SmallMolecule
entity reference: 3-Phosphoglyceric acid
name: SubPathwayInput

Compound/PW C000721 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: NAD
stoichiometric coefficient: 1.0

3.5.3.-
type: BiochemicalReaction
participant stoichiometry: Compound/PW C040764 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000941 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytosol/Stoichiometry/2.0
participant stoichiometry: Compound/PW C022608 Cytosol/Stoichiometry/1.0
right: S-ureidoglycine
right: Carbon dioxide
right: Ammonium
spontaneous: false
EC number: 3.5.3.-
left: Hydrogen Ion
left: Allantoic acid
left: Water
name: Allantoic acid + 2 Hydrogen Ion + Water → Ammonium + Carbon dioxide + S-ureidoglycine
conversion direction: LEFT_TO_RIGHT

ReactionCatalysis859644
type: Catalysis
controller: Unknown
controlled: 3.5.3.26
control type: ACTIVATION

Reference/KEGG Compound C00004
type: UnificationXref
id: C00004
db: KEGG Compound

3.5.2.5
type: BiochemicalReaction
participant stoichiometry: Compound/PW C040970 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000941 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytosol/Stoichiometry/1.0
right: Hydrogen Ion
right: Allantoic acid
spontaneous: false
EC number: 3.5.2.5
left: (S)-(+)-allantoin
left: Water
name: (S)-(+)-allantoin + Water → Allantoic acid + Hydrogen Ion
conversion direction: LEFT_TO_RIGHT

ReactionCatalysis859643
type: Catalysis
controller: Allantoate amidohydrolase
controlled: 3.5.3.-
control type: ACTIVATION

Reference/KEGG Compound C00003
type: UnificationXref
id: C00003
db: KEGG Compound

ReactionCatalysis859642
type: Catalysis
controller: Allantoinase
controlled: 3.5.2.5
control type: ACTIVATION

ReactionCatalysis859641
type: Catalysis
controller: Unknown
controlled: Reaction852816
control type: ACTIVATION

Reference/KEGG Compound C00002
type: UnificationXref
id: C00002
db: KEGG Compound

3.5.3.26
type: BiochemicalReaction
participant stoichiometry: Compound/PW C040764 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000795 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C022608 Cytosol/Stoichiometry/1.0
right: (S)-Ureidoglycolic acid
right: Ammonium
spontaneous: false
EC number: 3.5.3.26
left: S-ureidoglycine
left: Water
name: S-ureidoglycine + Water → (S)-Ureidoglycolic acid + Ammonium
conversion direction: LEFT_TO_RIGHT

Compound/PW C000090 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glyceric acid
stoichiometric coefficient: 1.0

ReactionCatalysis859648
type: Catalysis
controller: Unknown
controlled: 4.3.2.3
control type: ACTIVATION

ReactionCatalysis859647
type: Catalysis
controller: glyoxylate carboligase
controlled: 4.1.1.47
control type: ACTIVATION

Reaction852816
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000090 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000644 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034 Cytosol/Stoichiometry/1.0
right: Adenosine diphosphate
right: Hydrogen Ion
right: 3-Phosphoglyceric acid
spontaneous: false
left: Adenosine triphosphate
left: Glyceric acid
name: Adenosine triphosphate + Glyceric acid → 3-Phosphoglyceric acid + Adenosine diphosphate + Hydrogen Ion
conversion direction: LEFT_TO_RIGHT

ReactionCatalysis859646
type: Catalysis
controller: Unknown
controlled: Reaction852821
control type: ACTIVATION

1.1.1.60
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000090 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C003011 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000721 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001144 Cytosol/Stoichiometry/1.0
right: NAD
right: Glyceric acid
spontaneous: false
EC number: 1.1.1.60
left: Tartronate semialdehyde
left: Hydrogen Ion
left: NADH
name: Hydrogen Ion + NADH + Tartronate semialdehyde → Glyceric acid + NAD
conversion direction: LEFT_TO_RIGHT

ReactionCatalysis859645
type: Catalysis
controller: Unknown
controlled: 2.3.3.9
control type: ACTIVATION

Allantoate amidohydrolase
type: Complex
component stoichiometry: Protein/28267 Cytosol/Stoichiometry/2.0
cellular location: Cytosol
component: Unknown

Reference/BioCyc R--ALLANTOIN
type: UnificationXref
id: R--ALLANTOIN
db: BioCyc

an oxidized electron-transfer flavoprotein
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 5086

Reference/HMDB HMDB0000462
type: UnificationXref
id: HMDB0000462
db: HMDB

Glycolate and Glyoxylate Degradation
type: Pathway
pathway order: PathwayEnzymeReaction/6011491
pathway order: PathwayEnzymeReaction/6011483
pathway order: PathwayEnzymeReaction/6011494
pathway order: PathwayEnzymeReaction/6011493
pathway order: PathwayTransport/6011502
pathway order: PathwayTransport/6011501
pathway order: PathwayEnzymeReaction/6011490
pathway order: PathwayTransport/6011500
pathway order: PathwaySubPathway/429169
pathway order: PathwayTransport/6011499
pathway order: PathwayEnzymeReaction/6011488
pathway order: PathwayEnzymeReaction/6011496
pathway order: PathwayEnzymeReaction/6011495
pathway order: PathwayEnzymeReaction/6011498
pathway order: PathwayEnzymeReaction/6011486
pathway order: PathwayTransport/6011504
pathway order: PathwayTransport/6011503
pathway order: PathwaySubPathway/429170
pathway order: PathwaySubPathway/429171
pathway order: PathwaySubPathway/429172
pathway component: Reaction179424
pathway component: Serine Biosynthesis and Metabolism
pathway component: Glycolysis and Pyruvate Dehydrogenase
pathway component: TCA Cycle
pathway component: Transport58348
pathway component: Transport58340
pathway component: Transport58341
pathway component: Transport58342
pathway component: Reaction852821
pathway component: Transport58343
pathway component: 2.3.3.9
pathway component: 4.3.2.3
pathway component: Transport58345
pathway component: 4.1.1.47
pathway component: ReactionCatalysis859640
pathway component: 3.5.3.-
pathway component: ReactionCatalysis859644
pathway component: TransportCatalysis39229
pathway component: 3.5.2.5
pathway component: ReactionCatalysis859643
pathway component: ReactionCatalysis859642
pathway component: ReactionCatalysis859641
pathway component: 3.5.3.26
pathway component: ReactionCatalysis859648
pathway component: ReactionCatalysis859647
pathway component: Reaction852816
pathway component: ReactionCatalysis859646
pathway component: 1.1.1.60
pathway component: ReactionCatalysis859645
pathway component: TransportCatalysis39235
pathway component: TransportCatalysis39233
pathway component: TransportCatalysis39230
pathway component: TransportCatalysis39231
pathway component: Cysteine Biosynthesis
xref: Reference/SMPDB SMP0412632
xref: Reference/PathWhiz PW425115
organism: Escherichia coli O127:H6 str. E2348/69

Glycolysis and Pyruvate Dehydrogenase
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway429170
pathway component: SubPathwayInteraction429170
xref: Reference/PathWhiz PW000785
xref: Reference/SMPDB SMP0000807
name: SubPathway

Compound/PW C040034 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

NAD
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15846
xref: Reference/HMDB HMDB0000902
xref: Reference/CAS 53-84-9
xref: Reference/KEGG Compound C00003
xref: Reference/PubChem-compound 5893
xref: Reference/BioCyc NAD
xref: Reference/ChemSpider 5682
chemical formula: C21H27N7O14P2
molecular weight: 663.10913
structure: ChemicalStructure/PW C000721

(S)-(+)-allantoin
type: SmallMolecule
entity reference: (S)-(+)-allantoin

TCA Cycle
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway429172
pathway component: SubPathwayInteraction429172
xref: Reference/SMPDB SMP0000802
xref: Reference/PathWhiz PW000779
name: SubPathway

Reference/BioCyc CPD-1091
type: UnificationXref
id: CPD-1091
db: BioCyc

Reference/KEGG Compound C00011
type: UnificationXref
id: C00011
db: KEGG Compound

ChemicalStructure/PW C001316
type: ChemicalStructure
structure format: SMILES
structure data: O=C=O

Reference/KEGG Compound C01342
type: UnificationXref
id: C01342
db: KEGG Compound

Reference/ChEBI CHEBI 28938
type: UnificationXref
id: CHEBI:28938
db: ChEBI

Reference/KEGG Compound C00010
type: UnificationXref
id: C00010
db: KEGG Compound

Reference/HMDB HMDB0000902
type: UnificationXref
id: HMDB0000902
db: HMDB

Reference/KEGG Compound C00258
type: UnificationXref
id: C00258
db: KEGG Compound

Reference/KEGG Compound C00499
type: UnificationXref
id: C00499
db: KEGG Compound

Compound/Generic161/Stoichiometry/2.0
type: Stoichiometry
physical entity: an oxidized electron-transfer flavoprotein
stoichiometric coefficient: 2.0

Extracellular Space
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005615

Glyoxylic acid
type: SmallMolecule
entity reference: Glyoxylic acid

ChemicalStructure/PW C000352
type: ChemicalStructure
structure format: SMILES
structure data: NC(=O)NC1NC(=O)NC1=O

Glycolic acid
type: SmallMolecule
entity reference: Glycolic acid

NADH
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001487
xref: Reference/CAS 58-68-4
xref: Reference/PubChem-compound 439153
xref: Reference/BioCyc NADH
xref: Reference/ChemSpider 388299
xref: Reference/KEGG Compound C00004
xref: Reference/ChEBI CHEBI 16908
chemical formula: C21H29N7O14P2
molecular weight: 665.12476
structure: ChemicalStructure/PW C001144

Reference/HMDB HMDB0000115
type: UnificationXref
id: HMDB0000115
db: HMDB

Reference/PubChem-compound 5957
type: UnificationXref
id: 5957
db: PubChem-compound

Reference/HMDB HMDB0001206
type: UnificationXref
id: HMDB0001206
db: HMDB

(S)-(+)-allantoin
type: SmallMolecule
cellular location: Periplasmic Space
entity reference: (S)-(+)-allantoin

Reference/GENE ONTOLOGY GO 0005620
type: UnificationXref
id: GO:0005620
db: GENE ONTOLOGY

Hydrogen Ion
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00080
xref: Reference/ChEBI CHEBI 15378
xref: Reference/HMDB HMDB0059597
xref: Reference/PubChem-compound 1038
xref: Reference/ChemSpider 1010
chemical formula: H
molecular weight: 1.007825
structure: ChemicalStructure/PW C040034

Reference/KEGG Compound C00149
type: UnificationXref
id: C00149
db: KEGG Compound

S-ureidoglycine
type: SmallMolecule
cellular location: Cytosol
entity reference: S-ureidoglycine

Reference/HMDB HMDB0001209
type: UnificationXref
id: HMDB0001209
db: HMDB

Reference/HMDB HMDB0000119
type: UnificationXref
id: HMDB0000119
db: HMDB

Reference/CAS 56-65-5
type: UnificationXref
id: 56-65-5
db: CAS

Reference/CAS 53-84-9
type: UnificationXref
id: 53-84-9
db: CAS

Reference/ChEBI CHEBI 17497
type: UnificationXref
id: CHEBI:17497
db: ChEBI

Compound/PW C000073 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glycolic acid
stoichiometric coefficient: 1.0

Reference/KEGG Compound C00024
type: UnificationXref
id: C00024
db: KEGG Compound

Adenosine triphosphate
type: SmallMolecule
cellular location: Cytosol
entity reference: Adenosine triphosphate

Adenosine diphosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00008
xref: Reference/PubChem-compound 6022
xref: Reference/ChemSpider 5800
xref: Reference/CAS 58-64-0
xref: Reference/BioCyc ADP
xref: Reference/ChEBI CHEBI 16761
xref: Reference/HMDB HMDB0001341
chemical formula: C10H15N5O10P2
molecular weight: 427.02942
structure: ChemicalStructure/PW C001034

Reference/GENE ONTOLOGY GO 0005615
type: UnificationXref
id: GO:0005615
db: GENE ONTOLOGY

Reference/CAS 298-12-4
type: UnificationXref
id: 298-12-4
db: CAS

Cysteine Biosynthesis
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway429171
pathway component: SubPathwayInteraction429171
xref: Reference/SMPDB SMP0000821
xref: Reference/PathWhiz PW000800
name: SubPathway

Reference/PubChem-compound 3698251
type: UnificationXref
id: 3698251
db: PubChem-compound

Reference/SMPDB SMP0000802
type: UnificationXref
id: SMP0000802
db: SMPDB

Compound/PW C000795 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: (S)-Ureidoglycolic acid
stoichiometric coefficient: 1.0

Glycolic acid
type: SmallMolecule
cellular location: Periplasmic Space
entity reference: Glycolic acid

ChemicalStructure/PW C000721
type: ChemicalStructure
structure format: SMILES

Reference/PubChem-compound 760
type: UnificationXref
id: 760
db: PubChem-compound

Reference/ChEBI CHEBI 16891
type: UnificationXref
id: CHEBI:16891
db: ChEBI

Reference/SMPDB SMP0000807
type: UnificationXref
id: SMP0000807
db: SMPDB

Compound/PW C040034 Cytosol/Stoichiometry/2.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 2.0

Reference/ChemSpider 5682
type: UnificationXref
id: 5682
db: ChemSpider

Reference/HMDB HMDB0000807
type: UnificationXref
id: HMDB0000807
db: HMDB

ChemicalStructure/PW C001144
type: ChemicalStructure
structure format: SMILES

Reference/ChEBI CHEBI 1146900
type: UnificationXref
id: CHEBI:1146900
db: ChEBI

Water
type: SmallMolecule
entity reference: Water

Reference/ChemSpider 1090
type: UnificationXref
id: 1090
db: ChemSpider

Reference/KEGG Compound C00160
type: UnificationXref
id: C00160
db: KEGG Compound

Reference/HMDB HMDB0000139
type: UnificationXref
id: HMDB0000139
db: HMDB

Compound/PW C000200/Stoichiometry/1.0
type: Stoichiometry
physical entity: Urea
stoichiometric coefficient: 1.0

(S)-Ureidoglycolic acid
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00603
xref: Reference/ChemSpider 388403
xref: Reference/HMDB HMDB0001005
xref: Reference/ChEBI CHEBI 15412
xref: Reference/PubChem-compound 439269
xref: Reference/CAS 7424-03-5
xref: Reference/BioCyc CPD-1091
chemical formula: C3H6N2O4
molecular weight: 134.03276
structure: ChemicalStructure/PW C000795

Reference/ChEBI CHEBI 30837
type: UnificationXref
id: CHEBI:30837
db: ChEBI

Reference/HMDB HMDB0001341
type: UnificationXref
id: HMDB0001341
db: HMDB

Reference/KEGG Compound C00603
type: UnificationXref
id: C00603
db: KEGG Compound

Reference/ChemSpider 388403
type: UnificationXref
id: 388403
db: ChemSpider

Reference/BioCyc CO-A
type: UnificationXref
id: CO-A
db: BioCyc

Reference/PubChem-compound 222656
type: UnificationXref
id: 222656
db: PubChem-compound

Reference/CAS 72-89-9
type: UnificationXref
id: 72-89-9
db: CAS

Reference/KEGG Compound C00048
type: UnificationXref
id: C00048
db: KEGG Compound

ChemicalStructure/PW C001034
type: ChemicalStructure
structure format: SMILES

Coenzyme A
type: SmallMolecule
entity reference: Coenzyme A

Reference/ChEBI CHEBI 59947
type: UnificationXref
id: CHEBI:59947
db: ChEBI

Coenzyme A
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 1146900
xref: Reference/HMDB HMDB0001423
xref: Reference/PubChem-compound 6816
xref: Reference/BioCyc CO-A
xref: Reference/ChemSpider 6557
xref: Reference/CAS 85-61-0
xref: Reference/KEGG Compound C00010
chemical formula: C21H36N7O16P3S
molecular weight: 767.11523
structure: ChemicalStructure/PW C001099

Adenosine diphosphate
type: SmallMolecule
cellular location: Cytosol
entity reference: Adenosine diphosphate

Compound/PW C000941 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Allantoic acid
stoichiometric coefficient: 1.0

Urea
type: SmallMolecule
entity reference: Urea

Reference/CAS 14798-03-9
type: UnificationXref
id: 14798-03-9
db: CAS

Urea
type: SmallMoleculeReference
xref: Reference/BioCyc UREA
xref: Reference/CAS 57-13-6
xref: Reference/KEGG Compound C00086
xref: Reference/HMDB HMDB0000294
xref: Reference/ChemSpider 1143
xref: Reference/PubChem-compound 1176
xref: Reference/ChEBI CHEBI 16199
chemical formula: CH4N2O
molecular weight: 60.032364
structure: ChemicalStructure/PW C000200

Compound/PW C040764 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: S-ureidoglycine
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 15422
type: UnificationXref
id: CHEBI:15422
db: ChEBI

Reference/SMPDB SMP0000821
type: UnificationXref
id: SMP0000821
db: SMPDB

3-Phosphoglyceric acid
type: SmallMoleculeReference
xref: Reference/BioCyc G3P
xref: Reference/PubChem-compound 724
xref: Reference/ChEBI CHEBI 17050
xref: Reference/ChemSpider 704
xref: Reference/CAS 820-11-1
xref: Reference/KEGG Compound C00597
xref: Reference/HMDB HMDB0000807
chemical formula: C3H7O7P
molecular weight: 185.99294
structure: ChemicalStructure/PW C000644

Reference/ChemSpider 6557
type: UnificationXref
id: 6557
db: ChemSpider

ChemicalStructure/PW C040764
type: ChemicalStructure
structure format: SMILES
structure data: N[C@@H](NC(N)=O)C(O)=O

Compound/PW C003011 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Tartronate semialdehyde
stoichiometric coefficient: 1.0

ChemicalStructure/PW C000941
type: ChemicalStructure
structure format: SMILES
structure data: NC(=O)NC(NC(N)=O)C(O)=O

ChemicalStructure/PW C000940
type: ChemicalStructure
structure format: SMILES

(S)-Ureidoglycolic acid
type: SmallMolecule
entity reference: (S)-Ureidoglycolic acid

Reference/ChemSpider 388299
type: UnificationXref
id: 388299
db: ChemSpider

Reference/CAS 7732-18-5
type: UnificationXref
id: 7732-18-5
db: CAS

Glyoxylic acid
type: SmallMolecule
cellular location: Periplasmic Space
entity reference: Glyoxylic acid

Reference/SMPDB SMP0000829
type: UnificationXref
id: SMP0000829
db: SMPDB

Reduced acceptor
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15022

Compound/PW C040970 Extracellular Space/Stoichiometry/1.0
type: Stoichiometry
physical entity: (S)-(+)-allantoin
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16992
type: UnificationXref
id: CHEBI:16992
db: ChEBI

Compound/PW C001034 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine diphosphate
stoichiometric coefficient: 1.0

Reference/KEGG Compound C01146
type: UnificationXref
id: C01146
db: KEGG Compound

Reference/ChEBI CHEBI 16199
type: UnificationXref
id: CHEBI:16199
db: ChEBI

Reference/HMDB HMDB0001487
type: UnificationXref
id: HMDB0001487
db: HMDB

Reference/BioCyc GLYOX
type: UnificationXref
id: GLYOX
db: BioCyc

Reference/HMDB HMDB0000156
type: UnificationXref
id: HMDB0000156
db: HMDB

Compound/Generic40/Stoichiometry/2.0
type: Stoichiometry
physical entity: Reduced acceptor
stoichiometric coefficient: 2.0

Reference/HMDB HMDB0001005
type: UnificationXref
id: HMDB0001005
db: HMDB

Reference/HMDB HMDB0006938
type: UnificationXref
id: HMDB0006938
db: HMDB

Compound/PW C001316/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

Glyceric acid
type: SmallMoleculeReference
xref: Reference/ChemSpider 388334
xref: Reference/HMDB HMDB0000139
xref: Reference/PubChem-compound 439194
xref: Reference/ChEBI CHEBI 32398
xref: Reference/KEGG Compound C00258
xref: Reference/BioCyc 2-PG
xref: Reference/CAS 473-81-4
chemical formula: C3H6O4
molecular weight: 106.02661
structure: ChemicalStructure/PW C000090

Unknown
type: ProteinReference
organism: Escherichia coli O127:H6 str. E2348/69

Protein/28267 Cytosol/Stoichiometry/4.0
type: Stoichiometry
physical entity: Unknown
stoichiometric coefficient: 4.0

Allantoic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Allantoic acid

Compound/PW C040970/Stoichiometry/1.0
type: Stoichiometry
physical entity: (S)-(+)-allantoin
stoichiometric coefficient: 1.0

Water
type: SmallMolecule
cellular location: Cytosol
entity reference: Water

NAD
type: SmallMolecule
cellular location: Cytosol
entity reference: NAD

ChemicalStructure/PW C022608
type: ChemicalStructure
structure format: SMILES
structure data: [NH4+]

Reference/ChEBI CHEBI 15676
type: UnificationXref
id: CHEBI:15676
db: ChEBI

tartronate semialdehyde reductase 2
type: Complex
component stoichiometry: Protein/28267 Cytosol/Stoichiometry/4.0
cellular location: Cytosol
component: Unknown

Adenosine triphosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15422
xref: Reference/PubChem-compound 5957
xref: Reference/HMDB HMDB0000538
xref: Reference/CAS 56-65-5
xref: Reference/ChemSpider 5742
xref: Reference/BioCyc ATP
xref: Reference/KEGG Compound C00002
chemical formula: C10H16N5O13P3
molecular weight: 506.99576
structure: ChemicalStructure/PW C000414

Reference/ChEBI CHEBI 15678
type: UnificationXref
id: CHEBI:15678
db: ChEBI

Compound/PW C001099/Stoichiometry/1.0
type: Stoichiometry
physical entity: Coenzyme A
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 16526
type: UnificationXref
id: CHEBI:16526
db: ChEBI

TransportCatalysis39229
type: Catalysis
controller: Unknown
controlled: Transport58340
control type: ACTIVATION

Allantoin
type: SmallMolecule
cellular location: Cytosol
entity reference: Allantoin

Reference/ChEBI CHEBI 16761
type: UnificationXref
id: CHEBI:16761
db: ChEBI

Tartronate semialdehyde
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0006938
xref: Reference/ChemSpider 1090
xref: Reference/CAS 2480-77-5
xref: Reference/ChEBI CHEBI 16992
xref: Reference/KEGG Compound C01146
xref: Reference/PubChem-compound 1122
chemical formula: C3H4O4
molecular weight: 104.010956
structure: ChemicalStructure/PW C003011

Compound/PW C000075 Periplasmic Space/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glyoxylic acid
stoichiometric coefficient: 1.0

TransportCatalysis39235
type: Catalysis
controller: Unknown
controlled: Transport58348
control type: ACTIVATION

Reference/ChEBI CHEBI 17050
type: UnificationXref
id: CHEBI:17050
db: ChEBI

TransportCatalysis39233
type: Catalysis
controller: acetate / glycolate transporter
controlled: Transport58345
control type: ACTIVATION

(S)-(+)-allantoin
type: SmallMolecule
cellular location: Extracellular Space
entity reference: (S)-(+)-allantoin

Tartronate semialdehyde
type: SmallMolecule
entity reference: Tartronate semialdehyde

TransportCatalysis39230
type: Catalysis
controller: Unknown
controlled: Transport58341
control type: ACTIVATION

TransportCatalysis39231
type: Catalysis
controller: Unknown
controlled: Transport58343
control type: ACTIVATION

Compound/PW C040970 Periplasmic Space/Stoichiometry/1.0
type: Stoichiometry
physical entity: (S)-(+)-allantoin
stoichiometric coefficient: 1.0

Reference/BioCyc ALLANTOATE
type: UnificationXref
id: ALLANTOATE
db: BioCyc

Compound/PW C000795/Stoichiometry/1.0
type: Stoichiometry
physical entity: (S)-Ureidoglycolic acid
stoichiometric coefficient: 1.0

Compound/PW C001420 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Reference/CAS 97-59-6
type: UnificationXref
id: 97-59-6
db: CAS

3-Phosphoglyceric acid
type: SmallMolecule
cellular location: Cytosol
entity reference: 3-Phosphoglyceric acid

Reference/PubChem-compound 962
type: UnificationXref
id: 962
db: PubChem-compound

Reaction179424
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000352/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040970/Stoichiometry/1.0
right: (S)-(+)-allantoin
spontaneous: false
left: Allantoin
name: Allantoin → (S)-(+)-allantoin
conversion direction: LEFT_TO_RIGHT

Reference/PubChem-compound 724
type: UnificationXref
id: 724
db: PubChem-compound

S-ureidoglycine
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 59947
chemical formula: C3H7N3O3
molecular weight: 133.04874
structure: ChemicalStructure/PW C040764

Reference/ChemSpider 5800
type: UnificationXref
id: 5800
db: ChemSpider

Reference/ChemSpider 392413
type: UnificationXref
id: 392413
db: ChemSpider

ChemicalStructure/PW C000644
type: ChemicalStructure
structure format: SMILES
structure data: OC(COP(O)(O)=O)C(O)=O

Reference/CAS 2480-77-5
type: UnificationXref
id: 2480-77-5
db: CAS

Carbon dioxide
type: SmallMoleculeReference
xref: Reference/PubChem-compound 280
xref: Reference/ChEBI CHEBI 16526
xref: Reference/ChemSpider 274
xref: Reference/HMDB HMDB0001967
xref: Reference/CAS 124-38-9
xref: Reference/KEGG Compound C00011
chemical formula: CO2
molecular weight: 43.98983
structure: ChemicalStructure/PW C001316

Reference/ChemSpider 737
type: UnificationXref
id: 737
db: ChemSpider

Reference/PubChem-compound 5893
type: UnificationXref
id: 5893
db: PubChem-compound

Reference/PubChem-compound 1176
type: UnificationXref
id: 1176
db: PubChem-compound

Reference/KEGG Compound C00080
type: UnificationXref
id: C00080
db: KEGG Compound

Compound/PW C040970 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: (S)-(+)-allantoin
stoichiometric coefficient: 1.0

Periplasmic Space
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005620

Compound/PW C000352 Periplasmic Space/Stoichiometry/1.0
type: Stoichiometry
physical entity: Allantoin
stoichiometric coefficient: 1.0

Reference/CAS 99-16-1
type: UnificationXref
id: 99-16-1
db: CAS

ChemicalStructure/PW C000090
type: ChemicalStructure
structure format: SMILES
structure data: OC[C@@H](O)C(O)=O

Glyoxylic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Glyoxylic acid

Reference/PathWhiz PW425115
type: UnificationXref
id: PW425115
db: PathWhiz

Allantoin
type: SmallMoleculeReference
xref: Reference/PubChem-compound 204
xref: Reference/ChEBI CHEBI 15676
xref: Reference/ChemSpider 199
xref: Reference/KEGG Compound C01551
xref: Reference/BioCyc R--ALLANTOIN
xref: Reference/CAS 97-59-6
xref: Reference/HMDB HMDB0000462
chemical formula: C4H6N4O3
molecular weight: 158.04399
structure: ChemicalStructure/PW C000352

Reference/HMDB HMDB0002111
type: UnificationXref
id: HMDB0002111
db: HMDB

Reference/HMDB HMDB0000294
type: UnificationXref
id: HMDB0000294
db: HMDB

Reference/ChEBI CHEBI 15377
type: UnificationXref
id: CHEBI:15377
db: ChEBI

Reference/ChEBI CHEBI 15378
type: UnificationXref
id: CHEBI:15378
db: ChEBI

ChemicalStructure/PW C040034
type: ChemicalStructure
structure format: SMILES
structure data: [H+]

Reference/CAS 58-64-0
type: UnificationXref
id: 58-64-0
db: CAS

ChemicalStructure/PW C000414
type: ChemicalStructure
structure format: SMILES

Reference/KEGG Compound C00086
type: UnificationXref
id: C00086
db: KEGG Compound

Reference/PathWhiz PW000809
type: UnificationXref
id: PW000809
db: PathWhiz

Reference/BioCyc G3P
type: UnificationXref
id: G3P
db: BioCyc

Compound/PW C001420/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Compound/PW C000352/Stoichiometry/1.0
type: Stoichiometry
physical entity: Allantoin
stoichiometric coefficient: 1.0

ChemicalStructure/PW C003011
type: ChemicalStructure
structure format: SMILES
structure data: OC(C=O)C(O)=O

Reference/PubChem-compound 280
type: UnificationXref
id: 280
db: PubChem-compound

Tartronate semialdehyde
type: SmallMolecule
cellular location: Cytosol
entity reference: Tartronate semialdehyde

Compound/PW C000075/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glyoxylic acid
stoichiometric coefficient: 1.0

Reference/BioCyc GLYCOLLATE
type: UnificationXref
id: GLYCOLLATE
db: BioCyc

Reference/PathWhiz PW000800
type: UnificationXref
id: PW000800
db: PathWhiz

Compound/PW C000073 Periplasmic Space/Stoichiometry/1.0
type: Stoichiometry
physical entity: Glycolic acid
stoichiometric coefficient: 1.0

Reference/PubChem-compound 444493
type: UnificationXref
id: 444493
db: PubChem-compound

Reference/PubChem-compound 16741146
type: UnificationXref
id: 16741146
db: PubChem-compound

Reference/BioCyc 2-PG
type: UnificationXref
id: 2-PG
db: BioCyc

ChemicalStructure/PW C000075
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)C=O

Reference/BioCyc ACETYL-COA
type: UnificationXref
id: ACETYL-COA
db: BioCyc

an oxidized electron-transfer flavoprotein
type: SmallMolecule
entity reference: an oxidized electron-transfer flavoprotein

Water
type: SmallMoleculeReference
xref: Reference/PubChem-compound 962
xref: Reference/ChEBI CHEBI 15377
xref: Reference/KEGG Compound C00001
xref: Reference/ChemSpider 937
xref: Reference/HMDB HMDB0002111
xref: Reference/CAS 7732-18-5
chemical formula: H2O
molecular weight: 18.010565
structure: ChemicalStructure/PW C001420

Reference/ChemSpider 199
type: UnificationXref
id: 199
db: ChemSpider

Reference/ChemSpider 198
type: UnificationXref
id: 198
db: ChemSpider

Allantoin
type: SmallMolecule
entity reference: Allantoin

Ammonium
type: SmallMolecule
cellular location: Cytosol
entity reference: Ammonium

Reference/ChemSpider 193317
type: UnificationXref
id: 193317
db: ChemSpider

Reference/BioCyc NADH
type: UnificationXref
id: NADH
db: BioCyc

ChemicalStructure/PW C000073
type: ChemicalStructure
structure format: SMILES
structure data: OCC(O)=O

Protein/28267 Cytosol/Stoichiometry/2.0
type: Stoichiometry
physical entity: Unknown
stoichiometric coefficient: 2.0

Reference/BioCyc NAD
type: UnificationXref
id: NAD
db: BioCyc

ChemicalStructure/PW C040970
type: ChemicalStructure
structure format: SMILES
structure data: NC(=O)NC1NC(=O)NC1=O

Reference/HMDB HMDB0059597
type: UnificationXref
id: HMDB0059597
db: HMDB

Reference/HMDB HMDB0041827
type: UnificationXref
id: HMDB0041827
db: HMDB

Hydrogen Ion
type: SmallMolecule
cellular location: Periplasmic Space
entity reference: Hydrogen Ion

Compound/PW C001316 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

Carbon dioxide
type: SmallMolecule
entity reference: Carbon dioxide

Reference/HMDB HMDB0001967
type: UnificationXref
id: HMDB0001967
db: HMDB

Compound/PW C000352 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Allantoin
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 15351
type: UnificationXref
id: CHEBI:15351
db: ChEBI

Compound/PW C022608 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Ammonium
stoichiometric coefficient: 1.0

Reference/ChemSpider 740
type: UnificationXref
id: 740
db: ChemSpider

L-Malic acid
type: SmallMolecule
entity reference: L-Malic acid
name: SubPathwayInput

Compound/PW C040034 Periplasmic Space/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Reference/CAS 85-61-0
type: UnificationXref
id: 85-61-0
db: CAS

L-Malic acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000156
xref: Reference/ChEBI CHEBI 30797
xref: Reference/KEGG Compound C00149
xref: Reference/ChemSpider 193317
xref: Reference/PubChem-compound 222656
xref: Reference/CAS 97-67-6
chemical formula: C4H6O5
molecular weight: 134.02153
structure: ChemicalStructure/PW C000101

Allantoinase
type: Complex
component stoichiometry: Protein/28267 Cytosol/Stoichiometry/4.0
cellular location: Cytosol
component: Unknown

Reference/CAS 820-11-1
type: UnificationXref
id: 820-11-1
db: CAS