Reference/ChemSpider 17215925
type: UnificationXref
id: 17215925
db: ChemSpider

Reference/PubChem-compound 6022
type: UnificationXref
id: 6022
db: PubChem-compound

Oxalacetic acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000223
xref: Reference/CAS 328-42-7
xref: Reference/ChEBI CHEBI 30744
xref: Reference/BioCyc OXALACETIC ACID
xref: Reference/ChemSpider 945
xref: Reference/PubChem-compound 970
xref: Reference/KEGG Compound C00036
chemical formula: C4H4O5
molecular weight: 132.00587
structure: ChemicalStructure/PW C000148

Acetyl-CoA
type: SmallMoleculeReference
xref: Reference/BioCyc ACETYL-COA
xref: Reference/PubChem-compound 444493
xref: Reference/HMDB HMDB0001206
xref: Reference/ChemSpider 392413
xref: Reference/CAS 72-89-9
xref: Reference/ChEBI CHEBI 15351
xref: Reference/KEGG Compound C00024
chemical formula: C23H38N7O17P3S
molecular weight: 809.1258
structure: ChemicalStructure/PW C000940

Reference/PubChem-compound 439161
type: UnificationXref
id: 439161
db: PubChem-compound

Reference/ChemSpider 937
type: UnificationXref
id: 937
db: ChemSpider

lipoamide dehydrogenase
type: ProteinReference
xref: Reference/UniProt P0A9P0

Succinic acid
type: SmallMolecule
entity reference: Succinic acid

NADH
type: SmallMolecule
entity reference: NADH

Reference/ChEBI CHEBI 30797
type: UnificationXref
id: CHEBI:30797
db: ChEBI

cis-Aconitic acid
type: SmallMolecule
entity reference: cis-Aconitic acid

Reference/PubChem-compound 439153
type: UnificationXref
id: 439153
db: PubChem-compound

Reference/CAS 110-17-8
type: UnificationXref
id: 110-17-8
db: CAS

Reference/PubChem-compound 21883788
type: UnificationXref
id: 21883788
db: PubChem-compound

ChemicalStructure/PW C001420
type: ChemicalStructure
structure format: SMILES
structure data: O

D-threo-Isocitric acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001874
xref: Reference/ChemSpider 4477081
xref: Reference/BioCyc CPD-1941
xref: Reference/CAS 6061-97-8
xref: Reference/PubChem-compound 5318532
xref: Reference/KEGG Compound C00451
xref: Reference/ChEBI CHEBI 151
chemical formula: C6H8O7
molecular weight: 192.02701
structure: ChemicalStructure/PW C001246

Reference/BioCyc CIT
type: UnificationXref
id: CIT
db: BioCyc

Compound/PW C000063 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Citric acid
stoichiometric coefficient: 1.0

Escherichia coli ED1a
type: BioSource
xref: Reference/TAXONOMY 585397

Acetyl-CoA
type: SmallMolecule
cellular location: Cytosol
entity reference: Acetyl-CoA
name: SubPathwayOutput

Reference/HMDB HMDB0000094
type: UnificationXref
id: HMDB0000094
db: HMDB

Reference/ChemSpider 50
type: UnificationXref
id: 50
db: ChemSpider

Reference/HMDB HMDB0003364
type: UnificationXref
id: HMDB0003364
db: HMDB

Reference/ChEBI CHEBI 16389
type: UnificationXref
id: CHEBI:16389
db: ChEBI

NAD
type: SmallMolecule
entity reference: NAD

Reference/HMDB HMDB0000538
type: UnificationXref
id: HMDB0000538
db: HMDB

Compound/PW C000101/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Malic acid
stoichiometric coefficient: 1.0

Reference/BioCyc OXALACETIC ACID
type: UnificationXref
id: OXALACETIC_ACID
db: BioCyc

Reference/BioCyc ATP
type: UnificationXref
id: ATP
db: BioCyc

Protein/28272 Cytoplasm/Stoichiometry/2.0
type: Stoichiometry
physical entity: Unknown
stoichiometric coefficient: 2.0

Reference/ChEBI CHEBI 17594
type: UnificationXref
id: CHEBI:17594
db: ChEBI

Reference/HMDB HMDB0001874
type: UnificationXref
id: HMDB0001874
db: HMDB

Compound/PW C000414/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine triphosphate
stoichiometric coefficient: 1.0

Reference/PubChem-compound 6816
type: UnificationXref
id: 6816
db: PubChem-compound

Reference/CAS 328-42-7
type: UnificationXref
id: 328-42-7
db: CAS

Reference/ChemSpider 4477081
type: UnificationXref
id: 4477081
db: ChemSpider

Reference/PubChem-compound 51
type: UnificationXref
id: 51
db: PubChem-compound

Water
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Water

Reference/UniProt P0A9P0
type: UnificationXref
id: P0A9P0
db: UniProt

ChemicalStructure/PW C000101
type: ChemicalStructure
structure format: SMILES
structure data: O[C@@H](CC(O)=O)C(O)=O

Reference/ChEBI CHEBI 15846
type: UnificationXref
id: CHEBI:15846
db: ChEBI

Reference/BioCyc ADP
type: UnificationXref
id: ADP
db: BioCyc

Reference/CAS 53-59-8
type: UnificationXref
id: 53-59-8
db: CAS

1.1.1.37
type: BiochemicalReaction
participant stoichiometry: Compound/PW C040034 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000721 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001144 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000148 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000101 Cytosol/Stoichiometry/1.0
right: Oxalacetic acid
right: Hydrogen Ion
right: NADH
spontaneous: false
EC number: 1.1.1.37
left: NAD
left: L-Malic acid
name: L-Malic acid + NAD → Hydrogen Ion + NADH + Oxalacetic acid
conversion direction: LEFT_TO_RIGHT

Compound/PW C001034/Stoichiometry/1.0
type: Stoichiometry
physical entity: Adenosine diphosphate
stoichiometric coefficient: 1.0

Reaction1159293
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001099 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C040034 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000940 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000063 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000148 Cytosol/Stoichiometry/1.0
right: Coenzyme A
right: Citric acid
right: Hydrogen Ion
spontaneous: false
left: Oxalacetic acid
left: Acetyl-CoA
left: Water
name: Acetyl-CoA + Oxalacetic acid + Water → Citric acid + Coenzyme A + Hydrogen Ion
conversion direction: LEFT_TO_RIGHT

4.2.1.3
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000051 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000063 Cytoplasm/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
right: cis-Aconitic acid
right: Water
spontaneous: false
EC number: 4.2.1.3
left: Citric acid
name: Citric acid → Water + cis-Aconitic acid
conversion direction: LEFT_TO_RIGHT

Reference/ChEBI CHEBI 15380
type: UnificationXref
id: CHEBI:15380
db: ChEBI

Reference/KEGG Compound C00451
type: UnificationXref
id: C00451
db: KEGG Compound

Reference/ChemSpider 5742
type: UnificationXref
id: 5742
db: ChemSpider

NADH
type: SmallMolecule
cellular location: Cytosol
entity reference: NADH

Succinyl-CoA
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00091
xref: Reference/CAS 604-98-8
xref: Reference/ChemSpider 388307
xref: Reference/PubChem-compound 439161
xref: Reference/ChEBI CHEBI 15380
xref: Reference/BioCyc 3-METHYLBENZYLSUCCINYL-COA
xref: Reference/HMDB HMDB0001022
chemical formula: C25H40N7O19P3S
molecular weight: 867.1312
structure: ChemicalStructure/PW C000808

Reference/PubChem-compound 1038
type: UnificationXref
id: 1038
db: PubChem-compound

D-threo-Isocitric acid
type: SmallMolecule
entity reference: D-threo-Isocitric acid

Reference/ChEBI CHEBI 16474
type: UnificationXref
id: CHEBI:16474
db: ChEBI

Reference/GENE ONTOLOGY GO 0005829
type: UnificationXref
id: GO:0005829
db: GENE ONTOLOGY

Reference/ChemSpider 274
type: UnificationXref
id: 274
db: ChemSpider

Oxoglutaric acid
type: SmallMoleculeReference
xref: Reference/CAS 328-50-7
xref: Reference/PubChem-compound 51
xref: Reference/BioCyc 2-KETOGLUTARATE
xref: Reference/HMDB HMDB0000208
xref: Reference/ChEBI CHEBI 30915
xref: Reference/KEGG Compound C00026
xref: Reference/ChemSpider 50
chemical formula: C5H6O5
molecular weight: 146.02153
structure: ChemicalStructure/PW C000134

ReactionCatalysis1052000
type: Catalysis
controller: Unknown
controlled: Reaction1032109
control type: ACTIVATION

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
type: Protein
entity reference: Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Reference/CAS 97-67-6
type: UnificationXref
id: 97-67-6
db: CAS

2-oxoglutarate dehydrogenase E1 component
type: Protein
entity reference: 2-oxoglutarate dehydrogenase E1 component

Reference/ChEBI CHEBI 16908
type: UnificationXref
id: CHEBI:16908
db: ChEBI

Compound/PW C000088 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Fumaric acid
stoichiometric coefficient: 1.0

Reference/SMPDB SMP0512399
type: UnificationXref
id: SMP0512399
db: SMPDB

Unknown
type: Protein
entity reference: Unknown

Phosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00009
xref: Reference/PubChem-compound 1061
xref: Reference/CAS 14265-44-2
xref: Reference/HMDB HMDB0001429
xref: Reference/BioCyc CPD-8587
xref: Reference/ChEBI CHEBI 18367
xref: Reference/ChemSpider 1032
chemical formula: H3O4P
molecular weight: 97.9769
structure: ChemicalStructure/PW C001104

Oxalacetic acid
type: SmallMolecule
entity reference: Oxalacetic acid

Ubiquinone-1
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 16389
xref: Reference/ChemSpider 4307
xref: Reference/PubChem-compound 4462
xref: Reference/CAS 727-81-1
xref: Reference/HMDB HMDB0002012
xref: Reference/KEGG Compound C00399
chemical formula: C14H18O4
molecular weight: 250.12051
structure: ChemicalStructure/PW C001347

Ubiquinol-1
type: SmallMolecule
entity reference: Ubiquinol-1

NADPH
type: SmallMolecule
entity reference: NADPH

Reference/ChemSpider 945
type: UnificationXref
id: 945
db: ChemSpider

Reference/PubChem-compound 4650
type: UnificationXref
id: 4650
db: PubChem-compound

Reference/ChemSpider 558863
type: UnificationXref
id: 558863
db: ChemSpider

Reference/CAS 77-92-9
type: UnificationXref
id: 77-92-9
db: CAS

Reference/ChemSpider 1010
type: UnificationXref
id: 1010
db: ChemSpider

ChemicalStructure/PW C001099
type: ChemicalStructure
structure format: SMILES

Reference/ChEBI CHEBI 30769
type: UnificationXref
id: CHEBI:30769
db: ChEBI

NADP
type: SmallMolecule
entity reference: NADP

NADPH
type: SmallMoleculeReference
xref: Reference/CAS 53-57-6
xref: Reference/HMDB HMDB0000221
xref: Reference/PubChem-compound 22833512
xref: Reference/BioCyc NADPH
xref: Reference/ChemSpider 17215925
xref: Reference/KEGG Compound C00005
xref: Reference/ChEBI CHEBI 16474
chemical formula: C21H30N7O17P3
molecular weight: 745.0911
structure: ChemicalStructure/PW C000146

NADP
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00006
xref: Reference/CAS 53-59-8
xref: Reference/BioCyc NAD(P)
xref: Reference/HMDB HMDB0000217
xref: Reference/ChEBI CHEBI 18009
xref: Reference/PubChem-compound 5886
xref: Reference/ChemSpider 5675
chemical formula: C21H28N7O17P3
molecular weight: 743.07544
structure: ChemicalStructure/PW C000143

Compound/PW C001246/Stoichiometry/1.0
type: Stoichiometry
physical entity: D-threo-Isocitric acid
stoichiometric coefficient: 1.0

ChemicalStructure/PW C000808
type: ChemicalStructure
structure format: SMILES

ReactionCatalysis1186317
type: Catalysis
controller: malate dehydrogenase
controlled: 1.1.1.37
control type: ACTIVATION

Compound/PW C000146/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADPH
stoichiometric coefficient: 1.0

Reference/BioCyc NADPH
type: UnificationXref
id: NADPH
db: BioCyc

ReactionCatalysis1186315
type: Catalysis
controller: citrate synthase
controlled: Reaction1159293
control type: ACTIVATION

Compound/PW C000063 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Citric acid
stoichiometric coefficient: 1.0

ReactionCatalysis1186313
type: Catalysis
controller: Citrate hydro-lyase
controlled: 4.2.1.3
control type: ACTIVATION

Reference/PathWhiz PW000787
type: UnificationXref
id: PW000787
db: PathWhiz

Reference/PubChem-compound 643757
type: UnificationXref
id: 643757
db: PubChem-compound

Fumaric acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Fumaric acid

ReactionCatalysis1186314
type: Catalysis
controller: Citrate hydro-lyase (cis-aconitate-forming)
controlled: 4.2.1.3
control type: ACTIVATION

Reference/PathWhiz PW000785
type: UnificationXref
id: PW000785
db: PathWhiz

Reference/HMDB HMDB0000208
type: UnificationXref
id: HMDB0000208
db: HMDB

Reference/BioCyc 236-TRICHLOROHYDROQUINONE
type: UnificationXref
id: 236-TRICHLOROHYDROQUINONE
db: BioCyc

Reference/KEGG Compound C00472
type: UnificationXref
id: C00472
db: KEGG Compound

Cytosol
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005829

L-Malic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: L-Malic acid

Compound/PW C001144 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADH
stoichiometric coefficient: 1.0

Citrate hydro-lyase
type: Complex
component stoichiometry: Protein/28272 Cytoplasm/Stoichiometry/2.0
cellular location: Cytoplasm
component: Unknown

Adenosine triphosphate
type: SmallMolecule
entity reference: Adenosine triphosphate

Reference/BioCyc SUC
type: UnificationXref
id: SUC
db: BioCyc

Reference/CAS 58-68-4
type: UnificationXref
id: 58-68-4
db: CAS

Reference/HMDB HMDB0001423
type: UnificationXref
id: HMDB0001423
db: HMDB

Quinone
type: SmallMolecule
entity reference: Quinone

ChemicalStructure/PW C001104
type: ChemicalStructure
structure format: SMILES
structure data: OP(O)(O)=O

Reference/HMDB HMDB0000217
type: UnificationXref
id: HMDB0000217
db: HMDB

ChemicalStructure/PW C000134
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(=O)C(O)=O

Protein/6273/Stoichiometry/24.0
type: Stoichiometry
physical entity: Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
stoichiometric coefficient: 24.0

Reference/CAS 124-38-9
type: UnificationXref
id: 124-38-9
db: CAS

Reference/ChEBI CHEBI 30915
type: UnificationXref
id: CHEBI:30915
db: ChEBI

Reference/KEGG Compound C00009
type: UnificationXref
id: C00009
db: KEGG Compound

Reference/ChemSpider 4307
type: UnificationXref
id: 4307
db: ChemSpider

Reference/KEGG Compound C00008
type: UnificationXref
id: C00008
db: KEGG Compound

Reference/KEGG Compound C00006
type: UnificationXref
id: C00006
db: KEGG Compound

Compound/PW C000940 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Acetyl-CoA
stoichiometric coefficient: 1.0

Reference/ChEBI CHEBI 18009
type: UnificationXref
id: CHEBI:18009
db: ChEBI

Hydrogen Ion
type: SmallMolecule
cellular location: Cytosol
entity reference: Hydrogen Ion

Protein/7773/Stoichiometry/2.0
type: Stoichiometry
physical entity: lipoamide dehydrogenase
stoichiometric coefficient: 2.0

Reference/KEGG Compound C00001
type: UnificationXref
id: C00001
db: KEGG Compound

Reference/HMDB HMDB0001429
type: UnificationXref
id: HMDB0001429
db: HMDB

Reference/KEGG Compound C00122
type: UnificationXref
id: C00122
db: KEGG Compound

Compound/PW C000721 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: NAD
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001347
type: ChemicalStructure
structure format: SMILES
structure data: COC1=C(OC)C(=O)C(CC=C(C)C)=C(C)C1=O

Reference/KEGG Compound C00005
type: UnificationXref
id: C00005
db: KEGG Compound

Reference/KEGG Compound C00004
type: UnificationXref
id: C00004
db: KEGG Compound

Reference/ChEBI CHEBI 18367
type: UnificationXref
id: CHEBI:18367
db: ChEBI

Reference/KEGG Compound C00003
type: UnificationXref
id: C00003
db: KEGG Compound

Reference/ChemSpider 1032
type: UnificationXref
id: 1032
db: ChemSpider

Compound/PW C000148 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxalacetic acid
stoichiometric coefficient: 1.0

Reference/KEGG Compound C00002
type: UnificationXref
id: C00002
db: KEGG Compound

ChemicalStructure/PW C000143
type: ChemicalStructure
structure format: SMILES

SubPathwayInteraction570575
type: Interaction
name: SubPathwayReaction
name: SubPathway570575Reaction
participant: Succinic acid

Reference/HMDB HMDB0000221
type: UnificationXref
id: HMDB0000221
db: HMDB

SubPathwayInteraction570574
type: Interaction
name: SubPathway570574Reaction
name: SubPathwayReaction
participant: Acetyl-CoA

citrate synthase
type: Complex
component stoichiometry: Protein/28272 Cytosol/Stoichiometry/6.0
cellular location: Cytosol
component: Unknown

SubPathwayInteraction570573
type: Interaction
name: SubPathwayReaction
name: SubPathway570573Reaction
participant: Oxalacetic acid

Reference/HMDB HMDB0000223
type: UnificationXref
id: HMDB0000223
db: HMDB

ChemicalStructure/PW C000146
type: ChemicalStructure
structure format: SMILES

Fumaric acid
type: SmallMolecule
entity reference: Fumaric acid

Fumaric acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000134
xref: Reference/ChemSpider 10197150
xref: Reference/CAS 110-17-8
xref: Reference/PubChem-compound 21883788
xref: Reference/KEGG Compound C00122
xref: Reference/BioCyc FUM
xref: Reference/ChEBI CHEBI 18012
chemical formula: C4H4O4
molecular weight: 116.010956
structure: ChemicalStructure/PW C000088

Reference/CAS 53-57-6
type: UnificationXref
id: 53-57-6
db: CAS

Aspartate Metabolism
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway570573
pathway component: SubPathwayInteraction570573
xref: Reference/PathWhiz PW000787
xref: Reference/SMPDB SMP0000809
name: SubPathway

Glycolysis and Pyruvate Dehydrogenase
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway570574
pathway component: SubPathwayInteraction570574
xref: Reference/PathWhiz PW000785
xref: Reference/SMPDB SMP0000807
name: SubPathway

Reference/ChEBI CHEBI 15741
type: UnificationXref
id: CHEBI:15741
db: ChEBI

Compound/PW C040034 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydrogen Ion
stoichiometric coefficient: 1.0

Coenzyme A
type: SmallMolecule
cellular location: Cytosol
entity reference: Coenzyme A

NAD
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15846
xref: Reference/HMDB HMDB0000902
xref: Reference/CAS 53-84-9
xref: Reference/KEGG Compound C00003
xref: Reference/PubChem-compound 5893
xref: Reference/BioCyc NAD
xref: Reference/ChemSpider 5682
chemical formula: C21H27N7O14P2
molecular weight: 663.10913
structure: ChemicalStructure/PW C000721

Reference/PubChem-compound 447920
type: UnificationXref
id: 447920
db: PubChem-compound

Reference/KEGG Compound C00011
type: UnificationXref
id: C00011
db: KEGG Compound

ChemicalStructure/PW C001316
type: ChemicalStructure
structure format: SMILES
structure data: O=C=O

Reference/KEGG Compound C00010
type: UnificationXref
id: C00010
db: KEGG Compound

Reference/HMDB HMDB0000902
type: UnificationXref
id: HMDB0000902
db: HMDB

Reference/PubChem-compound 1110
type: UnificationXref
id: 1110
db: PubChem-compound

Reference/UniProt P0AFG3
type: UnificationXref
id: P0AFG3
db: UniProt

Compound/PW C000051 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: cis-Aconitic acid
stoichiometric coefficient: 1.0

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
type: ProteinReference
xref: Reference/UniProt P0AFG6

2-oxoglutarate dehydrogenase E1 component
type: ProteinReference
xref: Reference/UniProt P0AFG3

Reference/BioCyc NAD(P)
type: UnificationXref
id: NAD(P)
db: BioCyc

NADH
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0001487
xref: Reference/CAS 58-68-4
xref: Reference/PubChem-compound 439153
xref: Reference/BioCyc NADH
xref: Reference/ChemSpider 388299
xref: Reference/KEGG Compound C00004
xref: Reference/ChEBI CHEBI 16908
chemical formula: C21H29N7O14P2
molecular weight: 665.12476
structure: ChemicalStructure/PW C001144

Compound/PW C001420 Cytoplasm/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Reference/PubChem-compound 5957
type: UnificationXref
id: 5957
db: PubChem-compound

Reference/HMDB HMDB0001206
type: UnificationXref
id: HMDB0001206
db: HMDB

Reference/ChEBI CHEBI 151
type: UnificationXref
id: CHEBI:151
db: ChEBI

Succinic acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000254
xref: Reference/CAS 110-15-6
xref: Reference/ChEBI CHEBI 15741
xref: Reference/KEGG Compound C00042
xref: Reference/ChemSpider 1078
xref: Reference/PubChem-compound 1110
xref: Reference/BioCyc SUC
chemical formula: C4H6O4
molecular weight: 118.02661
structure: ChemicalStructure/PW C000174

Unknown
type: Protein
cellular location: Cytoplasm
entity reference: Unknown

cis-Aconitic acid
type: SmallMoleculeReference
xref: Reference/PubChem-compound 643757
xref: Reference/KEGG Compound C00417
xref: Reference/HMDB HMDB0000072
xref: Reference/ChEBI CHEBI 32805
xref: Reference/BioCyc CIS-ACONITATE
xref: Reference/ChemSpider 558863
xref: Reference/CAS 585-84-2
chemical formula: C6H6O6
molecular weight: 174.01643
structure: ChemicalStructure/PW C000051

Hydrogen Ion
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00080
xref: Reference/ChEBI CHEBI 15378
xref: Reference/HMDB HMDB0059597
xref: Reference/PubChem-compound 1038
xref: Reference/ChemSpider 1010
chemical formula: H
molecular weight: 1.007825
structure: ChemicalStructure/PW C040034

Reference/KEGG Compound C00149
type: UnificationXref
id: C00149
db: KEGG Compound

Reference/ChemSpider 388307
type: UnificationXref
id: 388307
db: ChemSpider

Ornithine Metabolism
type: Pathway
pathway order: SubPathwayInteractionSteps/SubPathway570575
pathway component: SubPathwayInteraction570575
xref: Reference/SMPDB SMP0000813
xref: Reference/PathWhiz PW000791
name: SubPathway

Reference/CAS 56-65-5
type: UnificationXref
id: 56-65-5
db: CAS

Reference/CAS 53-84-9
type: UnificationXref
id: 53-84-9
db: CAS

TCA Cycle
type: Pathway
pathway order: PathwayEnzymeReaction/7365529
pathway order: PathwayEnzymeReaction/7365528
pathway order: PathwayEnzymeReaction/7365539
pathway order: PathwayEnzymeReaction/7365527
pathway order: PathwayEnzymeReaction/7365538
pathway order: PathwayEnzymeReaction/7365537
pathway order: PathwaySubPathway/570575
pathway order: PathwaySubPathway/570574
pathway order: PathwaySubPathway/570573
pathway order: PathwayEnzymeReaction/7365532
pathway order: PathwayEnzymeReaction/7365530
pathway order: PathwayEnzymeReaction/7365541
pathway order: PathwayEnzymeReaction/7365540
pathway order: PathwayEnzymeReaction/7365534
pathway order: PathwayEnzymeReaction/7365533
pathway component: ReactionCatalysis1186317
pathway component: Aspartate Metabolism
pathway component: ReactionCatalysis1186315
pathway component: Glycolysis and Pyruvate Dehydrogenase
pathway component: 1.1.1.37
pathway component: ReactionCatalysis1186313
pathway component: ReactionCatalysis1186314
pathway component: Reaction1032109
pathway component: Reaction1159293
pathway component: 4.2.1.3
pathway component: ReactionCatalysis1492794
pathway component: ReactionCatalysis1492793
pathway component: ReactionCatalysis1052000
pathway component: Ornithine Metabolism
pathway component: ReactionCatalysis1492790
pathway component: ReactionCatalysis1492791
pathway component: 1.2.4.2
pathway component: 6.2.1.5
pathway component: Reaction1450852
pathway component: 1.1.1.42
pathway component: ReactionCatalysis1492787
pathway component: 4.2.1.2
pathway component: ReactionCatalysis1492789
pathway component: ReactionCatalysis1492788
pathway component: Reaction1450857
xref: Reference/SMPDB SMP0512399
xref: Reference/PathWhiz PW539122
organism: Escherichia coli ED1a

Reference/KEGG Compound C00026
type: UnificationXref
id: C00026
db: KEGG Compound

Reference/KEGG Compound C00024
type: UnificationXref
id: C00024
db: KEGG Compound

1.2.4.2
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000808/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000721/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001099/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001144/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134/Stoichiometry/1.0
right: NADH
right: Succinyl-CoA
right: Carbon dioxide
spontaneous: false
EC number: 1.2.4.2
left: Coenzyme A
left: Oxoglutaric acid
left: NAD
name: Coenzyme A + NAD + Oxoglutaric acid → Carbon dioxide + NADH + Succinyl-CoA
conversion direction: LEFT_TO_RIGHT

6.2.1.5
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000808/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000414/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001034/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001099/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000174/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001104/Stoichiometry/1.0
right: Coenzyme A
right: Succinic acid
right: Adenosine triphosphate
spontaneous: false
EC number: 6.2.1.5
left: Adenosine diphosphate
left: Succinyl-CoA
left: Phosphate
name: Adenosine diphosphate + Phosphate + Succinyl-CoA → Adenosine triphosphate + Coenzyme A + Succinic acid
conversion direction: LEFT_TO_RIGHT

Adenosine diphosphate
type: SmallMolecule
entity reference: Adenosine diphosphate

Reaction1450852
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001246/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000051/Stoichiometry/1.0
right: D-threo-Isocitric acid
spontaneous: false
left: cis-Aconitic acid
left: Water
name: Water + cis-Aconitic acid → D-threo-Isocitric acid
conversion direction: LEFT_TO_RIGHT

Reference/UniProt P0AFG6
type: UnificationXref
id: P0AFG6
db: UniProt

1.1.1.42
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001246/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000146/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001316/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000143/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000134/Stoichiometry/1.0
right: Oxoglutaric acid
right: Carbon dioxide
right: NADPH
spontaneous: false
EC number: 1.1.1.42
left: NADP
left: D-threo-Isocitric acid
name: D-threo-Isocitric acid + NADP → Carbon dioxide + NADPH + Oxoglutaric acid
conversion direction: LEFT_TO_RIGHT

Adenosine diphosphate
type: SmallMoleculeReference
xref: Reference/KEGG Compound C00008
xref: Reference/PubChem-compound 6022
xref: Reference/ChemSpider 5800
xref: Reference/CAS 58-64-0
xref: Reference/BioCyc ADP
xref: Reference/ChEBI CHEBI 16761
xref: Reference/HMDB HMDB0001341
chemical formula: C10H15N5O10P2
molecular weight: 427.02942
structure: ChemicalStructure/PW C001034

4.2.1.2
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000088 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001420 Cytosol/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000101 Cytosol/Stoichiometry/1.0
right: L-Malic acid
spontaneous: false
EC number: 4.2.1.2
left: Fumaric acid
left: Water
name: Fumaric acid + Water → L-Malic acid
conversion direction: LEFT_TO_RIGHT

Reference/GENE ONTOLOGY GO 0005737
type: UnificationXref
id: GO:0005737
db: GENE ONTOLOGY

Citrate hydro-lyase (cis-aconitate-forming)
type: Complex
component stoichiometry: Protein/28272 Cytoplasm/Stoichiometry/2.0
cellular location: Cytoplasm
component: Unknown

Reaction1450857
type: BiochemicalReaction
participant stoichiometry: Compound/PW C000101/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001632/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000148/Stoichiometry/1.0
participant stoichiometry: Compound/PW C001860/Stoichiometry/1.0
right: Oxalacetic acid
right: Hydroquinone
spontaneous: false
left: Quinone
left: L-Malic acid
name: L-Malic acid + Quinone → Hydroquinone + Oxalacetic acid
conversion direction: LEFT_TO_RIGHT

Protein/28272 Cytosol/Stoichiometry/6.0
type: Stoichiometry
physical entity: Unknown
stoichiometric coefficient: 6.0

Protein/6272/Stoichiometry/12.0
type: Stoichiometry
physical entity: 2-oxoglutarate dehydrogenase E1 component
stoichiometric coefficient: 12.0

Compound/PW C000143/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADP
stoichiometric coefficient: 1.0

Citric acid
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 30769
xref: Reference/BioCyc CIT
xref: Reference/HMDB HMDB0000094
xref: Reference/PubChem-compound 19782904
xref: Reference/KEGG Compound C00158
xref: Reference/CAS 77-92-9
xref: Reference/ChemSpider 305
chemical formula: C6H8O7
molecular weight: 192.02701
structure: ChemicalStructure/PW C000063

Compound/PW C042948/Stoichiometry/1.0
type: Stoichiometry
physical entity: Ubiquinol-1
stoichiometric coefficient: 1.0

Compound/PW C000721/Stoichiometry/1.0
type: Stoichiometry
physical entity: NAD
stoichiometric coefficient: 1.0

Hydroquinone
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0002434
xref: Reference/ChemSpider 764
xref: Reference/PubChem-compound 785
xref: Reference/CAS 123-31-9
xref: Reference/BioCyc 236-TRICHLOROHYDROQUINONE
xref: Reference/ChEBI CHEBI 17594
xref: Reference/KEGG Compound C00530
chemical formula: C6H6O2
molecular weight: 110.03678
structure: ChemicalStructure/PW C001632

ChemicalStructure/PW C000721
type: ChemicalStructure
structure format: SMILES

Reference/BioCyc CPD-8587
type: UnificationXref
id: CPD-8587
db: BioCyc

Reference/SMPDB SMP0000809
type: UnificationXref
id: SMP0000809
db: SMPDB

Reference/PubChem-compound 19782904
type: UnificationXref
id: 19782904
db: PubChem-compound

Reference/SMPDB SMP0000807
type: UnificationXref
id: SMP0000807
db: SMPDB

Reference/KEGG Compound C00158
type: UnificationXref
id: C00158
db: KEGG Compound

Reference/KEGG Compound C00036
type: UnificationXref
id: C00036
db: KEGG Compound

Reference/KEGG Compound C00399
type: UnificationXref
id: C00399
db: KEGG Compound

Reference/ChemSpider 5682
type: UnificationXref
id: 5682
db: ChemSpider

citrate dehydrogenase
type: Complex
component stoichiometry: Protein/28272/Stoichiometry/2.0
component: Unknown

Reference/CAS 328-50-7
type: UnificationXref
id: 328-50-7
db: CAS

ChemicalStructure/PW C001144
type: ChemicalStructure
structure format: SMILES

Reference/HMDB HMDB0002434
type: UnificationXref
id: HMDB0002434
db: HMDB

Reference/HMDB HMDB0000134
type: UnificationXref
id: HMDB0000134
db: HMDB

Reference/ChEBI CHEBI 1146900
type: UnificationXref
id: CHEBI:1146900
db: ChEBI

Reference/HMDB HMDB0000254
type: UnificationXref
id: HMDB0000254
db: HMDB

Water
type: SmallMolecule
entity reference: Water

ChemicalStructure/PW C000174
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CCC(O)=O

Oxalacetic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Oxalacetic acid
name: SubPathwayOutput

Reference/PubChem-compound 5318532
type: UnificationXref
id: 5318532
db: PubChem-compound

ChemicalStructure/PW C000051
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)C\C(=C\C(O)=O)C(O)=O

Compound/PW C001860/Stoichiometry/1.0
type: Stoichiometry
physical entity: Quinone
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0001341
type: UnificationXref
id: HMDB0001341
db: HMDB

Unknown
type: Protein
cellular location: Cytosol
entity reference: Unknown

Reference/SMPDB SMP0000813
type: UnificationXref
id: SMP0000813
db: SMPDB

Reference/TAXONOMY 585397
type: UnificationXref
id: 585397
db: TAXONOMY

Reference/BioCyc CO-A
type: UnificationXref
id: CO-A
db: BioCyc

Reference/PubChem-compound 222656
type: UnificationXref
id: 222656
db: PubChem-compound

Reference/ChemSpider 5675
type: UnificationXref
id: 5675
db: ChemSpider

Reference/KEGG Compound C00042
type: UnificationXref
id: C00042
db: KEGG Compound

ReactionCatalysis1492790
type: Catalysis
controller: 2-oxoglutarate dehydrogenase
controlled: 1.2.4.2
control type: ACTIVATION

Reference/ChemSpider 1078
type: UnificationXref
id: 1078
db: ChemSpider

Reference/CAS 72-89-9
type: UnificationXref
id: 72-89-9
db: CAS

ReactionCatalysis1492791
type: Catalysis
controller: succinyl-CoA synthetase
controlled: 6.2.1.5
control type: ACTIVATION

Coenzyme A
type: SmallMolecule
entity reference: Coenzyme A

Compound/PW C000808/Stoichiometry/1.0
type: Stoichiometry
physical entity: Succinyl-CoA
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001034
type: ChemicalStructure
structure format: SMILES

Reference/ChemSpider 764
type: UnificationXref
id: 764
db: ChemSpider

Coenzyme A
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 1146900
xref: Reference/HMDB HMDB0001423
xref: Reference/PubChem-compound 6816
xref: Reference/BioCyc CO-A
xref: Reference/ChemSpider 6557
xref: Reference/CAS 85-61-0
xref: Reference/KEGG Compound C00010
chemical formula: C21H36N7O16P3S
molecular weight: 767.11523
structure: ChemicalStructure/PW C001099

Reference/CAS 604-98-8
type: UnificationXref
id: 604-98-8
db: CAS

ChemicalStructure/PW C000063
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CC(O)(CC(O)=O)C(O)=O

ReactionCatalysis1492787
type: Catalysis
controller: Citrate hydro-lyase (cis-aconitate-forming)
controlled: Reaction1450852
control type: ACTIVATION

ReactionCatalysis1492789
type: Catalysis
controller: citrate dehydrogenase
controlled: 1.1.1.42
control type: ACTIVATION

ReactionCatalysis1492788
type: Catalysis
controller: Citrate hydro-lyase
controlled: Reaction1450852
control type: ACTIVATION

Compound/PW C001632/Stoichiometry/1.0
type: Stoichiometry
physical entity: Hydroquinone
stoichiometric coefficient: 1.0

Cytoplasm
type: CellularLocationVocabulary
xref: Reference/GENE ONTOLOGY GO 0005737

malate dehydrogenase
type: Complex
component stoichiometry: Protein/28272 Cytosol/Stoichiometry/2.0
cellular location: Cytosol
component: Unknown

Reference/ChemSpider 10197150
type: UnificationXref
id: 10197150
db: ChemSpider

Reference/ChEBI CHEBI 15422
type: UnificationXref
id: CHEBI:15422
db: ChEBI

Reference/PubChem-compound 785
type: UnificationXref
id: 785
db: PubChem-compound

Reference/ChemSpider 6557
type: UnificationXref
id: 6557
db: ChemSpider

Reference/BioCyc FUM
type: UnificationXref
id: FUM
db: BioCyc

Citric acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: Citric acid

ChemicalStructure/PW C000148
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)CC(=O)C(O)=O

ChemicalStructure/PW C000940
type: ChemicalStructure
structure format: SMILES

Reference/CAS 7732-18-5
type: UnificationXref
id: 7732-18-5
db: CAS

Reference/ChemSpider 388299
type: UnificationXref
id: 388299
db: ChemSpider

ChemicalStructure/PW C042948
type: ChemicalStructure
structure format: SMILES
structure data: COC1=C(O)C(C)=C(CC=C(C)C)C(O)=C1OC

Reference/ChEBI CHEBI 18012
type: UnificationXref
id: CHEBI:18012
db: ChEBI

Reference/HMDB HMDB0001487
type: UnificationXref
id: HMDB0001487
db: HMDB

Reference/HMDB HMDB0000156
type: UnificationXref
id: HMDB0000156
db: HMDB

ReactionCatalysis1492794
type: Catalysis
controller: fumarase hydratase
controlled: 4.2.1.2
control type: ACTIVATION

ReactionCatalysis1492793
type: Catalysis
controller: Unknown
controlled: Reaction1450857
control type: ACTIVATION

Compound/PW C001316/Stoichiometry/1.0
type: Stoichiometry
physical entity: Carbon dioxide
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001246
type: ChemicalStructure
structure format: SMILES
structure data: O[C@H]([C@H](CC(O)=O)C(O)=O)C(O)=O

Quinone
type: SmallMoleculeReference
xref: Reference/ChemSpider 4489
xref: Reference/CAS 106-51-4
xref: Reference/KEGG Compound C00472
xref: Reference/ChEBI CHEBI 16509
xref: Reference/BioCyc CPD-8130
xref: Reference/PubChem-compound 4650
xref: Reference/HMDB HMDB0003364
chemical formula: C6H4O2
molecular weight: 108.021126
structure: ChemicalStructure/PW C001860

Reference/ChEBI CHEBI 16509
type: UnificationXref
id: CHEBI:16509
db: ChEBI

Water
type: SmallMolecule
cellular location: Cytosol
entity reference: Water

NAD
type: SmallMolecule
cellular location: Cytosol
entity reference: NAD

Reference/PathWhiz PW000791
type: UnificationXref
id: PW000791
db: PathWhiz

Adenosine triphosphate
type: SmallMoleculeReference
xref: Reference/ChEBI CHEBI 15422
xref: Reference/PubChem-compound 5957
xref: Reference/HMDB HMDB0000538
xref: Reference/CAS 56-65-5
xref: Reference/ChemSpider 5742
xref: Reference/BioCyc ATP
xref: Reference/KEGG Compound C00002
chemical formula: C10H16N5O13P3
molecular weight: 506.99576
structure: ChemicalStructure/PW C000414

Reference/ChemSpider 4489
type: UnificationXref
id: 4489
db: ChemSpider

Citrate hydro-lyase (cis-aconitate-forming)
type: Complex
component stoichiometry: Protein/28272/Stoichiometry/2.0
component: Unknown

Compound/PW C001099/Stoichiometry/1.0
type: Stoichiometry
physical entity: Coenzyme A
stoichiometric coefficient: 1.0

Citrate hydro-lyase
type: Complex
component stoichiometry: Protein/28272/Stoichiometry/2.0
component: Unknown

Reference/ChEBI CHEBI 16526
type: UnificationXref
id: CHEBI:16526
db: ChEBI

Compound/PW C001144/Stoichiometry/1.0
type: Stoichiometry
physical entity: NADH
stoichiometric coefficient: 1.0

Compound/PW C000134/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxoglutaric acid
stoichiometric coefficient: 1.0

succinyl-CoA synthetase
type: Complex
component stoichiometry: Protein/28272/Stoichiometry/2.0
component: Unknown

Reference/BioCyc CPD-8130
type: UnificationXref
id: CPD-8130
db: BioCyc

Hydroquinone
type: SmallMolecule
entity reference: Hydroquinone

2-oxoglutarate dehydrogenase
type: Complex
component stoichiometry: Protein/6273/Stoichiometry/24.0
component stoichiometry: Protein/7773/Stoichiometry/2.0
component stoichiometry: Protein/6272/Stoichiometry/12.0
component: lipoamide dehydrogenase
component: Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
component: 2-oxoglutarate dehydrogenase E1 component

Reference/ChEBI CHEBI 16761
type: UnificationXref
id: CHEBI:16761
db: ChEBI

Reference/ChemSpider 305
type: UnificationXref
id: 305
db: ChemSpider

Compound/PW C000101 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: L-Malic acid
stoichiometric coefficient: 1.0

lipoamide dehydrogenase
type: Protein
entity reference: lipoamide dehydrogenase

Reference/CAS 123-31-9
type: UnificationXref
id: 123-31-9
db: CAS

Succinic acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Succinic acid
name: SubPathwayOutput

Compound/PW C001420 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

Unknown
type: ProteinReference

Reference/PubChem-compound 962
type: UnificationXref
id: 962
db: PubChem-compound

Compound/PW C001347/Stoichiometry/1.0
type: Stoichiometry
physical entity: Ubiquinone-1
stoichiometric coefficient: 1.0

Reference/BioCyc 2-KETOGLUTARATE
type: UnificationXref
id: 2-KETOGLUTARATE
db: BioCyc

Reaction1032109
type: BiochemicalReaction
participant stoichiometry: Compound/PW C001347/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000174/Stoichiometry/1.0
participant stoichiometry: Compound/PW C000088/Stoichiometry/1.0
participant stoichiometry: Compound/PW C042948/Stoichiometry/1.0
right: Fumaric acid
right: Ubiquinol-1
spontaneous: false
left: Succinic acid
left: Ubiquinone-1
name: Succinic acid + Ubiquinone-1 → Fumaric acid + Ubiquinol-1
conversion direction: LEFT_TO_RIGHT

Reference/CAS 6061-97-8
type: UnificationXref
id: 6061-97-8
db: CAS

Reference/ChemSpider 5800
type: UnificationXref
id: 5800
db: ChemSpider

Reference/ChemSpider 392413
type: UnificationXref
id: 392413
db: ChemSpider

Compound/PW C000174/Stoichiometry/1.0
type: Stoichiometry
physical entity: Succinic acid
stoichiometric coefficient: 1.0

Ubiquinol-1
type: SmallMoleculeReference
xref: Reference/PubChem-compound 447920
chemical formula: C14H20O4
molecular weight: 252.13615
structure: ChemicalStructure/PW C042948

Carbon dioxide
type: SmallMoleculeReference
xref: Reference/PubChem-compound 280
xref: Reference/ChEBI CHEBI 16526
xref: Reference/ChemSpider 274
xref: Reference/HMDB HMDB0001967
xref: Reference/CAS 124-38-9
xref: Reference/KEGG Compound C00011
chemical formula: CO2
molecular weight: 43.98983
structure: ChemicalStructure/PW C001316

Phosphate
type: SmallMolecule
entity reference: Phosphate

Reference/PubChem-compound 5893
type: UnificationXref
id: 5893
db: PubChem-compound

Compound/PW C001104/Stoichiometry/1.0
type: Stoichiometry
physical entity: Phosphate
stoichiometric coefficient: 1.0

Ubiquinone-1
type: SmallMolecule
entity reference: Ubiquinone-1

Reference/KEGG Compound C00080
type: UnificationXref
id: C00080
db: KEGG Compound

Reference/CAS 110-15-6
type: UnificationXref
id: 110-15-6
db: CAS

Oxoglutaric acid
type: SmallMolecule
entity reference: Oxoglutaric acid

ChemicalStructure/PW C001860
type: ChemicalStructure
structure format: SMILES
structure data: O=C1C=CC(=O)C=C1

fumarase hydratase
type: Complex
component stoichiometry: Protein/28272 Cytosol/Stoichiometry/2.0
cellular location: Cytosol
component: Unknown

Reference/HMDB HMDB0002111
type: UnificationXref
id: HMDB0002111
db: HMDB

Reference/PathWhiz PW539122
type: UnificationXref
id: PW539122
db: PathWhiz

Reference/HMDB HMDB0001022
type: UnificationXref
id: HMDB0001022
db: HMDB

Reference/ChEBI CHEBI 15377
type: UnificationXref
id: CHEBI:15377
db: ChEBI

Reference/CAS 14265-44-2
type: UnificationXref
id: 14265-44-2
db: CAS

Reference/ChEBI CHEBI 15378
type: UnificationXref
id: CHEBI:15378
db: ChEBI

ChemicalStructure/PW C040034
type: ChemicalStructure
structure format: SMILES
structure data: [H+]

Succinyl-CoA
type: SmallMolecule
entity reference: Succinyl-CoA

Reference/CAS 58-64-0
type: UnificationXref
id: 58-64-0
db: CAS

ChemicalStructure/PW C000414
type: ChemicalStructure
structure format: SMILES

Reference/PubChem-compound 5886
type: UnificationXref
id: 5886
db: PubChem-compound

Reference/CAS 585-84-2
type: UnificationXref
id: 585-84-2
db: CAS

Reference/KEGG Compound C00091
type: UnificationXref
id: C00091
db: KEGG Compound

Compound/PW C001420/Stoichiometry/1.0
type: Stoichiometry
physical entity: Water
stoichiometric coefficient: 1.0

ChemicalStructure/PW C001632
type: ChemicalStructure
structure format: SMILES
structure data: OC1=CC=C(O)C=C1

Reference/PubChem-compound 280
type: UnificationXref
id: 280
db: PubChem-compound

Reference/ChEBI CHEBI 30744
type: UnificationXref
id: CHEBI:30744
db: ChEBI

Reference/ChEBI CHEBI 32805
type: UnificationXref
id: CHEBI:32805
db: ChEBI

Reference/PubChem-compound 4462
type: UnificationXref
id: 4462
db: PubChem-compound

Reference/PubChem-compound 444493
type: UnificationXref
id: 444493
db: PubChem-compound

Protein/28272/Stoichiometry/2.0
type: Stoichiometry
physical entity: Unknown
stoichiometric coefficient: 2.0

Reference/KEGG Compound C00417
type: UnificationXref
id: C00417
db: KEGG Compound

Reference/KEGG Compound C00530
type: UnificationXref
id: C00530
db: KEGG Compound

Reference/PubChem-compound 22833512
type: UnificationXref
id: 22833512
db: PubChem-compound

Reference/BioCyc ACETYL-COA
type: UnificationXref
id: ACETYL-COA
db: BioCyc

Compound/PW C001099 Cytosol/Stoichiometry/1.0
type: Stoichiometry
physical entity: Coenzyme A
stoichiometric coefficient: 1.0

Reference/CAS 727-81-1
type: UnificationXref
id: 727-81-1
db: CAS

Water
type: SmallMoleculeReference
xref: Reference/PubChem-compound 962
xref: Reference/ChEBI CHEBI 15377
xref: Reference/KEGG Compound C00001
xref: Reference/ChemSpider 937
xref: Reference/HMDB HMDB0002111
xref: Reference/CAS 7732-18-5
chemical formula: H2O
molecular weight: 18.010565
structure: ChemicalStructure/PW C001420

Citric acid
type: SmallMolecule
cellular location: Cytosol
entity reference: Citric acid

Reference/ChemSpider 193317
type: UnificationXref
id: 193317
db: ChemSpider

Reference/HMDB HMDB0000072
type: UnificationXref
id: HMDB0000072
db: HMDB

Reference/BioCyc NADH
type: UnificationXref
id: NADH
db: BioCyc

Reference/BioCyc 3-METHYLBENZYLSUCCINYL-COA
type: UnificationXref
id: 3-METHYLBENZYLSUCCINYL-COA
db: BioCyc

Compound/PW C000148/Stoichiometry/1.0
type: Stoichiometry
physical entity: Oxalacetic acid
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0002012
type: UnificationXref
id: HMDB0002012
db: HMDB

Reference/BioCyc NAD
type: UnificationXref
id: NAD
db: BioCyc

cis-Aconitic acid
type: SmallMolecule
cellular location: Cytoplasm
entity reference: cis-Aconitic acid

Reference/PubChem-compound 1061
type: UnificationXref
id: 1061
db: PubChem-compound

Compound/PW C000051/Stoichiometry/1.0
type: Stoichiometry
physical entity: cis-Aconitic acid
stoichiometric coefficient: 1.0

Reference/HMDB HMDB0059597
type: UnificationXref
id: HMDB0059597
db: HMDB

Reference/BioCyc CPD-1941
type: UnificationXref
id: CPD-1941
db: BioCyc

Carbon dioxide
type: SmallMolecule
entity reference: Carbon dioxide

Reference/HMDB HMDB0001967
type: UnificationXref
id: HMDB0001967
db: HMDB

Reference/CAS 106-51-4
type: UnificationXref
id: 106-51-4
db: CAS

Protein/28272 Cytosol/Stoichiometry/2.0
type: Stoichiometry
physical entity: Unknown
stoichiometric coefficient: 2.0

Reference/ChEBI CHEBI 15351
type: UnificationXref
id: CHEBI:15351
db: ChEBI

Reference/BioCyc CIS-ACONITATE
type: UnificationXref
id: CIS-ACONITATE
db: BioCyc

Reference/PubChem-compound 970
type: UnificationXref
id: 970
db: PubChem-compound

ChemicalStructure/PW C000088
type: ChemicalStructure
structure format: SMILES
structure data: OC(=O)\C=C\C(O)=O

L-Malic acid
type: SmallMolecule
entity reference: L-Malic acid

Reference/CAS 85-61-0
type: UnificationXref
id: 85-61-0
db: CAS

L-Malic acid
type: SmallMoleculeReference
xref: Reference/HMDB HMDB0000156
xref: Reference/ChEBI CHEBI 30797
xref: Reference/KEGG Compound C00149
xref: Reference/ChemSpider 193317
xref: Reference/PubChem-compound 222656
xref: Reference/CAS 97-67-6
chemical formula: C4H6O5
molecular weight: 134.02153
structure: ChemicalStructure/PW C000101

Compound/PW C000088/Stoichiometry/1.0
type: Stoichiometry
physical entity: Fumaric acid
stoichiometric coefficient: 1.0