Downloads
| Category | Description | File | File Size (zipped) | Contents | Generated On |
|---|---|---|---|---|
| Data Files | PathBank pathways CSV (subjects and descriptions) | Download | 2.9 MB | 1 file listing all pathways | Aug 15 2019 |
| Metabolite names linked to PathBank pathways CSV (includes KEGG and ChEBI IDs) | Download | 52.1 MB | 1 file listing all metabolite-pathway links | Oct 18 2019 | |
| Protein names linked to PathBank pathways CSV (includes UniProt IDs) | Download | 3.9 MB | 1 file listing all protein-pathway links | Oct 18 2019 | |
| BioPAX files | Download | 752 MB | 110234 files | Sep 13 2019 | |
| SBGN files | Download | 422 MB | 110234 files | Sep 12 2019 | |
| SBML files | Download | 955 MB | 110234 files | Sep 13 2019 | |
| PWML files | Download | 3.44 GB | 110234 files | Sep 12 2019 | |
| RXN files | Download | 141 MB | 1 file per species | Aug 15 2019 | |
| SDF files | Download | 32.9 MB | 1 file combining structures from all species | Aug 21 2019 | |
|
Images
(Primary pathways only Contact us for all) |
SVG files | Download | 645 MB | 2687 files | Feb 19 2020 |
| PNG files | Download | 4.73 GB | 2687 files | Jan 14 2020 | |
|
Sequences
(in FASTA Format) |
Protein Sequences | Download | 2.28 MB | 1 file combining sequences from all species | Aug 16 2019 |
| Gene Sequences | Download | 701 KB | 1 file combining sequences from all species | Aug 16 2019 | |
| Data Files (Primary Pathways Only) | PathBank primary pathways CSV (subjects and descriptions) | Download | 723 KB | 1 file listing all pathways | Aug 16 2019 |
| Metabolite names linked to PathBank primary pathways CSV (includes KEGG and ChEBI IDs) | Download | 4.5 MB | 1 file listing all metabolite-pathway links | Oct 18 2019 | |
| Protein names linked to PathBank primary pathways CSV (includes UniProt IDs) | Download | 561 KB | 1 file listing all protein-pathway links | Oct 18 2019 | |
| BioPAX files for primary pathways | Download | 26.5 MB | 2687 files | Aug 16 2019 | |
| SBGN files for primary pathways | Download | 21.3 MB | 2687 files | Aug 16 2019 | |
| SBML files for primary pathways | Download | 33.4 MB | 2687 files | Aug 16 2019 | |
| PWML files for primary pathways | Download | 129 MB | 2687 files | Aug 16 2019 | |
| RXN files for primary pathways | Download | 6.38 MB | 1 file per species | Aug 15 2019 | |
| SDF files for primary pathways | Download | 2.05 MB | 1 file combining structures from all species | Aug 16 2019 |