SMP0645521
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Uracil Degradation III
Methylococcus capsulatus
Matched Description: Uracil is a pyrimidine nucleobase found in RNA, and can be used as a source of nitrogen for E. coli … broken down into both carbamic acid and 3-aminoacrylate following the addition of a water molecule by the … addition of a hydrogen ion, split into an ammonium ion and a molecule of carbon dioxide. 3-aminoacrylate … compound enters into a reaction catalyzed by protein rutD, which adds a water molecule and hydrogen ion … and forms malonic semialdehyde with ammonium being a byproduct. Finally, the putative NADH
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SMP0645523
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Uracil Degradation III
Achromobacter xylosoxidans A8
Matched Description: Uracil is a pyrimidine nucleobase found in RNA, and can be used as a source of nitrogen for E. coli … broken down into both carbamic acid and 3-aminoacrylate following the addition of a water molecule by the … addition of a hydrogen ion, split into an ammonium ion and a molecule of carbon dioxide. 3-aminoacrylate … compound enters into a reaction catalyzed by protein rutD, which adds a water molecule and hydrogen ion … and forms malonic semialdehyde with ammonium being a byproduct. Finally, the putative NADH
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SMP0645534
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Uracil Degradation III
Bacteroides fluxus YIT 12057
Matched Description: Uracil is a pyrimidine nucleobase found in RNA, and can be used as a source of nitrogen for E. coli … broken down into both carbamic acid and 3-aminoacrylate following the addition of a water molecule by the … addition of a hydrogen ion, split into an ammonium ion and a molecule of carbon dioxide. 3-aminoacrylate … compound enters into a reaction catalyzed by protein rutD, which adds a water molecule and hydrogen ion … and forms malonic semialdehyde with ammonium being a byproduct. Finally, the putative NADH
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SMP0470012
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Uracil Degradation III
Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Matched Description: Uracil is a pyrimidine nucleobase found in RNA, and can be used as a source of nitrogen for E. coli … broken down into both carbamic acid and 3-aminoacrylate following the addition of a water molecule by the … addition of a hydrogen ion, split into an ammonium ion and a molecule of carbon dioxide. 3-aminoacrylate … compound enters into a reaction catalyzed by protein rutD, which adds a water molecule and hydrogen ion … and forms malonic semialdehyde with ammonium being a byproduct. Finally, the putative NADH
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SMP0645529
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Uracil Degradation III
Acinetobacter calcoaceticus PHEA-2
Matched Description: Uracil is a pyrimidine nucleobase found in RNA, and can be used as a source of nitrogen for E. coli … broken down into both carbamic acid and 3-aminoacrylate following the addition of a water molecule by the … addition of a hydrogen ion, split into an ammonium ion and a molecule of carbon dioxide. 3-aminoacrylate … compound enters into a reaction catalyzed by protein rutD, which adds a water molecule and hydrogen ion … and forms malonic semialdehyde with ammonium being a byproduct. Finally, the putative NADH
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SMP0645588
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Uracil Degradation III
Lautropia mirabilis ATCC 51599
Matched Description: Uracil is a pyrimidine nucleobase found in RNA, and can be used as a source of nitrogen for E. coli … broken down into both carbamic acid and 3-aminoacrylate following the addition of a water molecule by the … addition of a hydrogen ion, split into an ammonium ion and a molecule of carbon dioxide. 3-aminoacrylate … compound enters into a reaction catalyzed by protein rutD, which adds a water molecule and hydrogen ion … and forms malonic semialdehyde with ammonium being a byproduct. Finally, the putative NADH
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SMP0471648
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Uracil Degradation III
Enterobacter cancerogenus ATCC 35316
Matched Description: Uracil is a pyrimidine nucleobase found in RNA, and can be used as a source of nitrogen for E. coli … broken down into both carbamic acid and 3-aminoacrylate following the addition of a water molecule by the … addition of a hydrogen ion, split into an ammonium ion and a molecule of carbon dioxide. 3-aminoacrylate … compound enters into a reaction catalyzed by protein rutD, which adds a water molecule and hydrogen ion … and forms malonic semialdehyde with ammonium being a byproduct. Finally, the putative NADH
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SMP0658842
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Trehalose
Pseudomonas aeruginosa
Matched Description: The pathway of trehalose utilization in Escherichia coli is different at low and high osmolarity … and glucose 6-phosphate. treB and treC, the genes for the enzymes involved, form an operon that is … transcriptional regulator TreR. TreR typically functions as a repressor and responds to the presence of … synthesis and degradation pathways depending on the metabolic context.
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SMP0401522
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Mannose Metabolism
Escherichia coli (strain B / BL21-DE3)
Matched Description: Escherichia coli can utilize D-mannose for its sole carbon and energy source. Alpha-D-mannose is … isomerase. D-fructose-6-phosphate is an intermediate of glycolysis and can enter the pathways of … phosphorylated aldohexoses (β-D-glucose-6-phosphate, D-mannose-6-phosphate) and phosphorylated ketohexoses (D … phosphomannomutase and mannose-1-phosphate guanylyltransferase. GDP-D-mannose produces GDP-L-fucose beginning … epimerase and reductase of GDP-4-dehydro-6-deoxy-D-mannose. L-fucose then enters the colanic acid building blocks biosynthesis pathway.
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SMP0405943
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Mannose Metabolism
Parabacteroides sp. 20_3
Matched Description: Escherichia coli can utilize D-mannose for its sole carbon and energy source. Alpha-D-mannose is … isomerase. D-fructose-6-phosphate is an intermediate of glycolysis and can enter the pathways of … phosphorylated aldohexoses (β-D-glucose-6-phosphate, D-mannose-6-phosphate) and phosphorylated ketohexoses (D … phosphomannomutase and mannose-1-phosphate guanylyltransferase. GDP-D-mannose produces GDP-L-fucose beginning … epimerase and reductase of GDP-4-dehydro-6-deoxy-D-mannose. L-fucose then enters the colanic acid building blocks biosynthesis pathway.
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