SMP0646680
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Benzoate Catabolism Pathway (benABCD Operon Activation)
Escherichia coli (strain ATCC 55124 / KO11)
Matched Description: as a carbon source and involves the conversion of benzoate into intermediates that can enter the … is activated by the benM gene which encodes for a transcriptional regulator and is outside of this … regulator, enhancing its ability to bind the promoter and facilitate RNA polymerase recruitment, thus … the catechil ortho-cleavage pathway and eventually feeds the TCA cycle. benB encodes benzoate 1,2 … operon is influenced by benK and benP which are also outside of the operon and encode for membrane
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SMP0536725
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Benzoate Catabolism Pathway (benABCD Operon Activation)
Kluyvera ascorbata ATCC 33433
Matched Description: as a carbon source and involves the conversion of benzoate into intermediates that can enter the … is activated by the benM gene which encodes for a transcriptional regulator and is outside of this … regulator, enhancing its ability to bind the promoter and facilitate RNA polymerase recruitment, thus … the catechil ortho-cleavage pathway and eventually feeds the TCA cycle. benB encodes benzoate 1,2 … operon is influenced by benK and benP which are also outside of the operon and encode for membrane
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SMP0540709
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Benzoate Catabolism Pathway (benABCD Operon Activation)
Xanthomonas campestris
Matched Description: as a carbon source and involves the conversion of benzoate into intermediates that can enter the … is activated by the benM gene which encodes for a transcriptional regulator and is outside of this … regulator, enhancing its ability to bind the promoter and facilitate RNA polymerase recruitment, thus … the catechil ortho-cleavage pathway and eventually feeds the TCA cycle. benB encodes benzoate 1,2 … operon is influenced by benK and benP which are also outside of the operon and encode for membrane
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SMP0540720
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Benzoate Catabolism Pathway (benABCD Operon Activation)
Vibrio cholerae
Matched Description: as a carbon source and involves the conversion of benzoate into intermediates that can enter the … is activated by the benM gene which encodes for a transcriptional regulator and is outside of this … regulator, enhancing its ability to bind the promoter and facilitate RNA polymerase recruitment, thus … the catechil ortho-cleavage pathway and eventually feeds the TCA cycle. benB encodes benzoate 1,2 … operon is influenced by benK and benP which are also outside of the operon and encode for membrane
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SMP0666940
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Menaquinone biosynthesis
Pseudomonas aeruginosa
Matched Description: production of this essential electron carrier, which plays a central role in anaerobic and aerobic … -succinylbenzoate synthase, and other enzymes. OSB is then ligated with Coenzyme A (CoA) to form o … -succinylbenzoyl-CoA, which undergoes cyclization and further modifications, including the attachment of a … , by shuttling electrons between membrane-bound complexes and facilitating proton motive force … generation. This pathway is particularly significant in Gram-positive bacteria, such as Bacillus and
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SMP0646197
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Polymyxin Resistance
Escherichia coli 536
Matched Description: oxoglutaric acid and UDP-4-amino-4-deoxy-beta-L-arabinopyranose The latter compound interacts with … a tetrahydrofolate, a hydrogen ion and a UDP-4-deoxy-4-formamido-beta-L-arabinopyranose, which in … turn reacts with a product of the methylerythritol phosphate and polysoprenoid biosynthesis pathway … ditrans, octacis-undecaprenyl phosphate hypothetically reacts with water and results in the release … of a formic acid and 4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
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SMP0502980
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Polymyxin Resistance
Escherichia coli 042
Matched Description: oxoglutaric acid and UDP-4-amino-4-deoxy-beta-L-arabinopyranose The latter compound interacts with … a tetrahydrofolate, a hydrogen ion and a UDP-4-deoxy-4-formamido-beta-L-arabinopyranose, which in … turn reacts with a product of the methylerythritol phosphate and polysoprenoid biosynthesis pathway … ditrans, octacis-undecaprenyl phosphate hypothetically reacts with water and results in the release … of a formic acid and 4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
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SMP0667076
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Quorum sensing: N-(3-Oxooctanoyl)-L-homoserine lactone Biofilm Regulation
Pseudomonas aeruginosa
Matched Description: binds to specific promoter regions of target genes and activates the expression of key genes within the … alginate biosynthetic operon (alg) and the poly-β-1,6-N-acetyl-D-glucosamine (PGA) operon. The alg … accumulates and activates LasR, it triggers a regulatory cascade that enhances the expression of both operons … , leading to increased biofilm integrity and stability. This dual regulation not only promotes the … stresses and antimicrobial agents, underscoring the importance of quorum sensing in microbial community dynamics and biofilm formation.
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SMP0501526
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Polymyxin Resistance
Escherichia coli E24377A
Matched Description: oxoglutaric acid and UDP-4-amino-4-deoxy-beta-L-arabinopyranose The latter compound interacts with … a tetrahydrofolate, a hydrogen ion and a UDP-4-deoxy-4-formamido-beta-L-arabinopyranose, which in … turn reacts with a product of the methylerythritol phosphate and polysoprenoid biosynthesis pathway … ditrans, octacis-undecaprenyl phosphate hypothetically reacts with water and results in the release … of a formic acid and 4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
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SMP0658840
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Succinate Oxidation (sdh Operon activation)
Pseudomonas aeruginosa
Matched Description: The sdh Operon is essential for the citric acid cycle and respiration. It encodes pencodes the … , sdhA, and sdhB. SdhC encodes a subunit of succinate dehydrogenase (SDH), which is an enzyme that … overall structure and function. sdhA encodes the flavoprotein component of the succinate … CRP (cAMP Receptor Protein), ArcA and FNR. When glucose is scarce, cAMP levels rise, leading to the … sdh operon, facilitating the recruitment of RNA polymerase and enhancing transcription. The absence
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