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Pathway Description
Operon: Cytochrome bd Terminal Oxidase appCBXA
Escherichia coli
Category:
Protein Pathway
Sub-Categories:
Gene Regulatory
Stress-Activated Signaling
Cellular Response
Created: 2015-10-27
Last Updated: 2025-05-31
The appCBXA operon in E. coli contains four genes that encode for cytochrome bd-II subunits, as well as an acid phosphatase. The operon is activated in situations with low oxygen by the binding of RNA polymerase sigma factor RpoS. This sigma factor allows RNA polymerase to bind, transcribing the operon. The operon can also be activated by the HTH-type transcriptional regulator AppY, which activates the translation and synthesis of these proteins during growth phase deceleration. It can also stabilize RpoS if the bacteria is stressed.
The operon can be inactivated by the binding of cAMP-activated global transcriptional regulator CRP (CAP). This complex is activated when cAMP levels are high in the cell, and binds to the promoter region, preventing RNA polymerase from transcribing the operon.
The first two genes in the operon, appC and appB, encode the cytochrome bd-II oxidase subunits 1 and 2, which form a heterodimer.
The third gene, appX, encodes a putative cytochrome bd-II ubiquinol oxidase subunit, which may be part of a bd-II oxidase trimer along with the products of appC and appB.
The fourth gene, appA, produces phosphoanhydride phosphorylase, previously referred to as the pH 2.5 acid phosphatase. This enzyme removes a phosphate group from a molecule, and works optimally at a pH of 2.5. It also has its own promoter, and can be transcribed without the rest of the operon.
References
Operon: Cytochrome bd Terminal Oxidase appCBXA References
Dassa J, Fsihi H, Marck C, Dion M, Kieffer-Bontemps M, Boquet PL: A new oxygen-regulated operon in Escherichia coli comprises the genes for a putative third cytochrome oxidase and for pH 2.5 acid phosphatase (appA) Mol Gen Genet. 1991 Oct;229(3):341-52.
Pubmed: 1658595
Touati E, Danchin A: The structure of the promoter and amino terminal region of the pH 2.5 acid phosphatase structural gene (appA) of E. coli: a negative control of transcription mediated by cyclic AMP. Biochimie. 1987 Mar;69(3):215-21.
Pubmed: 3038201
Vijayakumar SR, Kirchhof MG, Patten CL, Schellhorn HE: RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis. J Bacteriol. 2004 Dec;186(24):8499-507. doi: 10.1128/JB.186.24.8499-8507.2004.
Pubmed: 15576800
Dassa J, Fsihi H, Marck C, Dion M, Kieffer-Bontemps M, Boquet PL: A new oxygen-regulated operon in Escherichia coli comprises the genes for a putative third cytochrome oxidase and for pH 2.5 acid phosphatase (appA) Mol Gen Genet. 1991 Oct;229(3):341-52. doi: 10.1007/bf00267454.
Pubmed: 1658595
Oshima T, Aiba H, Baba T, Fujita K, Hayashi K, Honjo A, Ikemoto K, Inada T, Itoh T, Kajihara M, Kanai K, Kashimoto K, Kimura S, Kitagawa M, Makino K, Masuda S, Miki T, Mizobuchi K, Mori H, Motomura K, Nakamura Y, Nashimoto H, Nishio Y, Saito N, Horiuchi T, et al.: A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Res. 1996 Jun 30;3(3):137-55. doi: 10.1093/dnares/3.3.137.
Pubmed: 8905232
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
Dassa J, Marck C, Boquet PL: The complete nucleotide sequence of the Escherichia coli gene appA reveals significant homology between pH 2.5 acid phosphatase and glucose-1-phosphatase. J Bacteriol. 1990 Sep;172(9):5497-500. doi: 10.1128/jb.172.9.5497-5500.1990.
Pubmed: 2168385
Touati E, Danchin A: The structure of the promoter and amino terminal region of the pH 2.5 acid phosphatase structural gene (appA) of E. coli: a negative control of transcription mediated by cyclic AMP. Biochimie. 1987 Mar;69(3):215-21. doi: 10.1016/0300-9084(87)90045-9.
Pubmed: 3038201
Atlung T, Nielsen A, Hansen FG: Isolation, characterization, and nucleotide sequence of appY, a regulatory gene for growth-phase-dependent gene expression in Escherichia coli. J Bacteriol. 1989 Mar;171(3):1683-91. doi: 10.1128/jb.171.3.1683-1691.1989.
Pubmed: 2537825
Kemp EH, Minton NP, Mann NH: Complete nucleotide sequence and deduced amino acid sequence of the M5 polypeptide gene of Escherichia coli. Nucleic Acids Res. 1987 May 11;15(9):3924. doi: 10.1093/nar/15.9.3924.
Pubmed: 3295784
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
Tanaka K, Takayanagi Y, Fujita N, Ishihama A, Takahashi H: Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli. Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3511-5. doi: 10.1073/pnas.90.8.3511.
Pubmed: 8475100
Mulvey MR, Loewen PC: Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor. Nucleic Acids Res. 1989 Dec 11;17(23):9979-91. doi: 10.1093/nar/17.23.9979.
Pubmed: 2690013
Ivanova A, Renshaw M, Guntaka RV, Eisenstark A: DNA base sequence variability in katF (putative sigma factor) gene of Escherichia coli. Nucleic Acids Res. 1992 Oct 25;20(20):5479-80. doi: 10.1093/nar/20.20.5479.
Pubmed: 1437569
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