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Pathway Description
Operon: Periplasmic Binding Protein Inner Membrane Protein Controlled by araC
Escherichia coli
Category:
Protein Pathway
Sub-Categories:
Gene Regulatory
Transport/Degradation
Cellular Response
Created: 2015-10-29
Last Updated: 2019-09-27
The araFGH operon in E. coli contains three genes that encode the proteins that make up an ABC transporter complex involved in the transport of arabinose into the cell.
The operon can be activated by the cAMP-activated global transcriptional regulator CRP (CAP), which in turn is activated by the binding of cAMP to the protein. Activated CRP can bind to DNA upstream of the promoter, and can interacrt with RNA polymerase, activating transcription of the operon. The binding of cAMP occurs when the levels are high, typically in instances where glucose is lacking in the cell.
The operon can also be activated by the binding of the AraC family transcriptional regulator. AraC is activated in the presence of alpha-L-arabinopyranose, which binds to the protein and allows it to bind more strongly to its binding sites upstream of the CRP binding site. In this operon, AraC can bind in four different locations, and allow the operon to be transcribed.
The first gene in the operon, araF, encodes an L-arabinose-binding periplasmic protein, which is one of the five subunits making up the arabinose transporter complex.
The second gene, araG, encodes the arabinose import ATP-binding protein AraG, which is likely responsible for the ATP coupling involved in the transport of arabinose. Two AraG subunits are involved in the transporter complex.
The final gene, araH, encodes the L-arabinose transport system permease protein AraH, which is likely involved in the translocation of arabinose across the cell membrane. Two AraH subunits are involved in the transporter complex.
References
Operon: Periplasmic Binding Protein Inner Membrane Protein Controlled by araC References
Hendrickson W, Stoner C, Schleif R: Characterization of the Escherichia coli araFGH and araJ promoters. J Mol Biol. 1990 Oct 20;215(4):497-510. doi: 10.1016/S0022-2836(05)80163-9.
Pubmed: 2231717
Gallegos MT, Schleif R, Bairoch A, Hofmann K, Ramos JL: Arac/XylS family of transcriptional regulators. Microbiol Mol Biol Rev. 1997 Dec;61(4):393-410.
Pubmed: 9409145
Hendrickson W, Flaherty C, Molz L: Sequence elements in the Escherichia coli araFGH promoter. J Bacteriol. 1992 Nov;174(21):6862-71. doi: 10.1128/jb.174.21.6862-6871.1992.
Pubmed: 1400237
Scripture JB, Voelker C, Miller S, O'Donnell RT, Polgar L, Rade J, Horazdovsky BF, Hogg RW: High-affinity L-arabinose transport operon. Nucleotide sequence and analysis of gene products. J Mol Biol. 1987 Sep 5;197(1):37-46. doi: 10.1016/0022-2836(87)90607-3.
Pubmed: 2445996
Itoh T, Aiba H, Baba T, Hayashi K, Inada T, Isono K, Kasai H, Kimura S, Kitakawa M, Kitagawa M, Makino K, Miki T, Mizobuchi K, Mori H, Mori T, Motomura K, Nakade S, Nakamura Y, Nashimoto H, Nishio Y, Oshima T, Saito N, Sampei G, Seki Y, Horiuchi T, et al.: A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. DNA Res. 1996 Dec 31;3(6):379-92. doi: 10.1093/dnares/3.6.379.
Pubmed: 9097040
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
Wallace RG, Lee N, Fowler AV: The araC gene of Escherichia coli: transcriptional and translational start-points and complete nucleotide sequence. Gene. 1980 Dec;12(3-4):179-90. doi: 10.1016/0378-1119(80)90100-6.
Pubmed: 7019009
Miyada CG, Horwitz AH, Cass LG, Timko J, Wilcox G: DNA sequence of the araC regulatory gene from Escherichia coli B/r. Nucleic Acids Res. 1980 Nov 25;8(22):5267-74. doi: 10.1093/nar/8.22.5267.
Pubmed: 7008027
Stoner CM, Schleif R: Is the amino acid but not the nucleotide sequence of the Escherichia coli araC gene conserved? J Mol Biol. 1982 Feb 5;154(4):649-52. doi: 10.1016/s0022-2836(82)80020-x.
Pubmed: 6283093
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