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Pathway Description
Operon: Glycine Cleavage System
Escherichia coli
Category:
Protein Pathway
Sub-Categories:
Gene Regulatory
Transport/Degradation
Cellular Response
Created: 2015-11-03
Last Updated: 2019-10-22
The gcvTHP operon in E. coli contains three genes that encode proteins involved in the glycine cleavage system. This system consists of four proteins, three of which are encoded in this operon, the other being the lipoamide dehydrogenase Lpd protein encoded by the lpd gene. Activation of the system occurs when large concentration of glycine are found in the cell, forming carbon dioxide, ammonia, a reduced pyridine nucleotide that cam be reused, and 5,10-methylenetetrahydrofolate. This operon can be activated by the binding of the activated cAMP-activated global transcriptional regulator CRP (CAP). CRP is activated in the presence of high levels of cAMP, which occurs typically while glucose levels are low. The operon can also be activated by the binding of activated leucine-responsive regulatory protein, (Lrp) which is activated by the binding of L-leucine. Both Lrp and CRP bind to the promoter region of the operon, activating transcription.
The first gene in the operon, gcvT, encodes an aminomethyltransferase also known as the glycine cleavage system T-protein. This protein transfers the amino group from the intermediate produced by the H-protein, as well as the formation of 5,10-methylenetetrahydrofolate.
The second gene, gcvH, encodes the glycine cleavage system H-protein. This protein transfers the methylamine group of glycine between the P and T-proteins of the cleavage system.
The final gene in the operon, gcvP, encodes a decarboxylating glycine dehydrogenase, also known as the glycine cleavage system P-protein. This protein binds to and cleaves the amino group of glycine, transferring it to the complex with the H-protein and releasing carbon dioxide.
References
Operon: Glycine Cleavage System References
Wonderling LD, Stauffer GV: The cyclic AMP receptor protein is dependent on GcvA for regulation of the gcv operon. J Bacteriol. 1999 Mar;181(6):1912-9.
Pubmed: 10074087
Wilson RL, Urbanowski ML, Stauffer GV: DNA binding sites of the LysR-type regulator GcvA in the gcv and gcvA control regions of Escherichia coli. J Bacteriol. 1995 Sep;177(17):4940-6.
Pubmed: 7665470
Jourdan AD, Stauffer GV: Genetic analysis of the GcvA binding site in the gcvA control region. Microbiology. 1999 Aug;145 ( Pt 8):2153-62. doi: 10.1099/13500872-145-8-2153.
Pubmed: 10463182
Stauffer LT, Fogarty SJ, Stauffer GV: Characterization of the Escherichia coli gcv operon. Gene. 1994 May 3;142(1):17-22.
Pubmed: 8181752
Stauffer LT, Stauffer GV: Role for the leucine-responsive regulatory protein (Lrp) as a structural protein in regulating the Escherichia coli gcvTHP operon. Microbiology. 1999 Mar;145 ( Pt 3):569-76. doi: 10.1099/13500872-145-3-569.
Pubmed: 10217490
McArthur SD, Pulvermacher SC, Stauffer GV: The Yersinia pestis gcvB gene encodes two small regulatory RNA molecules. BMC Microbiol. 2006 Jun 12;6:52. doi: 10.1186/1471-2180-6-52.
Pubmed: 16768793
Cho BK, Federowicz SA, Embree M, Park YS, Kim D, Palsson BO: The PurR regulon in Escherichia coli K-12 MG1655. Nucleic Acids Res. 2011 Aug;39(15):6456-64. doi: 10.1093/nar/gkr307. Epub 2011 May 13.
Pubmed: 21572102
Stauffer LT, Steiert PS, Steiert JG, Stauffer GV: An Escherichia coli protein with homology to the H-protein of the glycine cleavage enzyme complex from pea and chicken liver. DNA Seq. 1991;2(1):13-7.
Pubmed: 1802033
Okamura-Ikeda K, Ohmura Y, Fujiwara K, Motokawa Y: Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system. Eur J Biochem. 1993 Sep 1;216(2):539-48. doi: 10.1111/j.1432-1033.1993.tb18172.x.
Pubmed: 8375392
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
Stauffer LT, Fogarty SJ, Stauffer GV: Characterization of the Escherichia coli gcv operon. Gene. 1994 May 3;142(1):17-22. doi: 10.1016/0378-1119(94)90349-2.
Pubmed: 8181752
Stauffer LT, Ghrist A, Stauffer GV: The Escherichia coli gcvT gene encoding the T-protein of the glycine cleavage enzyme system. DNA Seq. 1993;3(6):339-46.
Pubmed: 8219277
Stephens PE, Lewis HM, Darlison MG, Guest JR: Nucleotide sequence of the lipoamide dehydrogenase gene of Escherichia coli K12. Eur J Biochem. 1983 Oct 3;135(3):519-27. doi: 10.1111/j.1432-1033.1983.tb07683.x.
Pubmed: 6352260
Fujita N, Mori H, Yura T, Ishihama A: Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Nucleic Acids Res. 1994 May 11;22(9):1637-9. doi: 10.1093/nar/22.9.1637.
Pubmed: 8202364
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
Willins DA, Ryan CW, Platko JV, Calvo JM: Characterization of Lrp, and Escherichia coli regulatory protein that mediates a global response to leucine. J Biol Chem. 1991 Jun 15;266(17):10768-74.
Pubmed: 2040596
Oshima T, Aiba H, Baba T, Fujita K, Hayashi K, Honjo A, Ikemoto K, Inada T, Itoh T, Kajihara M, Kanai K, Kashimoto K, Kimura S, Kitagawa M, Makino K, Masuda S, Miki T, Mizobuchi K, Mori H, Motomura K, Nakamura Y, Nashimoto H, Nishio Y, Saito N, Horiuchi T, et al.: A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Res. 1996 Jun 30;3(3):137-55. doi: 10.1093/dnares/3.3.137.
Pubmed: 8905232
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