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Pathway Description
Operon: Ribonuclease & Pyrimidine Biosynthesis
Escherichia coli
Category:
Protein Pathway
Sub-Categories:
Gene Regulatory
Cellular Response
Created: 2015-11-04
Last Updated: 2025-05-10
The rph-pyrE operon in E. coli contains two genes. one of which is involved in the production of uridine monophosphate, and the other is non-active due to a frameshift mutation. There are no known activators or repressors of the operon.
The first gene, rph, encodes the truncated inactive ribonuclease PH, which is inactivated due to a frameshift mutation in the E. coli strain K12 MG1665, a popular lab strain of the bacteria. This mutation allows the protein to be transcribed and translated, but it is non-functional. If restored to its functional state, the protein is involved in tRNA and rRNA degradation.
The second gene, pyrE, encodes orotate phosphoribosyltransferase, an enzyme catalyzes the formation of orotidine 5'-phosphate and diphosphate from orotate and 5-phospho-alpha-D-ribose 1-diphosphate. This is one step of the pathway of the biosynthesis of UMP, an RNA nucleotide.
References
Operon: Ribonuclease & Pyrimidine Biosynthesis References
Andersen JT, Poulsen P, Jensen KF: Attenuation in the rph-pyrE operon of Escherichia coli and processing of the dicistronic mRNA. Eur J Biochem. 1992 Jun 1;206(2):381-90.
Pubmed: 1375912
Jensen KF: The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels. J Bacteriol. 1993 Jun;175(11):3401-7.
Pubmed: 8501045
Poulsen P, Bonekamp F, Jensen KF: Structure of the Escherichia coli pyrE operon and control of pyrE expression by a UTP modulated intercistronic attentuation. EMBO J. 1984 Aug;3(8):1783-90.
Pubmed: 6207018
Bowden KE, Wiese NS, Perwez T, Mohanty BK, Kushner SR: The rph-1-Encoded Truncated RNase PH Protein Inhibits RNase P Maturation of Pre-tRNAs with Short Leader Sequences in the Absence of RppH. J Bacteriol. 2017 Oct 17;199(22). pii: JB.00301-17. doi: 10.1128/JB.00301-17. Print 2017 Nov 15.
Pubmed: 28808133
Burland V, Plunkett G 3rd, Daniels DL, Blattner FR: DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Genomics. 1993 Jun;16(3):551-61. doi: 10.1006/geno.1993.1230.
Pubmed: 7686882
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
Poulsen P, Jensen KF, Valentin-Hansen P, Carlsson P, Lundberg LG: Nucleotide sequence of the Escherichia coli pyrE gene and of the DNA in front of the protein-coding region. Eur J Biochem. 1983 Sep 15;135(2):223-9. doi: 10.1111/j.1432-1033.1983.tb07641.x.
Pubmed: 6349999
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