
Loading Pathway...
Error: Pathway image not found.
Hide
Pathway Description
Operon: Methionine Biosynthesis
Escherichia coli
Category:
Protein Pathway
Sub-Categories:
Gene Regulatory
Cellular Response
Created: 2015-11-06
Last Updated: 2025-05-31
The metBL operon in E. coli contains two genes that encode proteins involved in the biosynthesis of methionine. The operon has known repressors, as well as a known activator. The operon can be activated by the binding of the activated transcriptional regulatory protein PhoP-phosphate complex to the PhoP binding site upstream of the promoter. The PhoP-phosphate complex is formed in a phosphorylation reaction where the sensor protein PhoQ donates its phosphate group to PhoP. The binding of the PhoP complex helps with recruitment of RNA polymerase, initiating transcription of the operon. The repressor of the operon is the Met repressor MetJ, which binds upstream of both the promoter and PhoP binding site. It can bind to multiple sites in this region, and repressor proteins interact with each other. When this interaction occurs, the Met repressor proteins form and bind to the operator of the operon, preventing RNA polymerase from binding and preventing transcription.
The first gene in the operator, metB, encodes cystathionine gamma-synthase, an enzyme that catalyzes the formation of L,L-cystathionine and succinate from L-cysteine and O-succinyl-L-homomserine, as part of the de novo biosynthesis of L-methionine pathway.
The second and final gene, metL, encodes bifunctional aspartokinase/homoserine dehydrogenase 2, four molecules of which form a complex with four molecules of bifunctional aspartokinase/homoserine dehydrogenase 1. This complex catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine, using NADP as a cofactor. This reaction is used as a part of the L-methionine biosynthesis pathway, as well as L-lysine and L-threonine biosynthesis pathways.
References
Operon: Methionine Biosynthesis References
Drazic A, Miura H, Peschek J, Le Y, Bach NC, Kriehuber T, Winter J: Methionine oxidation activates a transcription factor in response to oxidative stress. Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9493-8. doi: 10.1073/pnas.1300578110. Epub 2013 May 20.
Pubmed: 23690622
Gebendorfer KM, Drazic A, Le Y, Gundlach J, Bepperling A, Kastenmuller A, Ganzinger KA, Braun N, Franzmann TM, Winter J: Identification of a hypochlorite-specific transcription factor from Escherichia coli. J Biol Chem. 2012 Feb 24;287(9):6892-903. doi: 10.1074/jbc.M111.287219. Epub 2012 Jan 4.
Pubmed: 22223481
Greene RC, Smith AA: Insertion mutagenesis of the metJBLF gene cluster of Escherichia coli K-12: evidence for an metBL operon. J Bacteriol. 1984 Aug;159(2):767-9.
Pubmed: 6086586
Huerta AM, Collado-Vides J: Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals. J Mol Biol. 2003 Oct 17;333(2):261-78.
Pubmed: 14529615
Kirby TW, Hindenach BR, Greene RC: Regulation of in vivo transcription of the Escherichia coli K-12 metJBLF gene cluster. J Bacteriol. 1986 Mar;165(3):671-7.
Pubmed: 2419307
Liu R, Blackwell TW, States DJ: Conformational model for binding site recognition by the E.coli MetJ transcription factor. Bioinformatics. 2001 Jul;17(7):622-33.
Pubmed: 11448880
Marincs F, Manfield IW, Stead JA, McDowall KJ, Stockley PG: Transcript analysis reveals an extended regulon and the importance of protein-protein co-operativity for the Escherichia coli methionine repressor. Biochem J. 2006 Jun 1;396(2):227-34. doi: 10.1042/BJ20060021.
Pubmed: 16515535
Monsieurs P, De Keersmaecker S, Navarre WW, Bader MW, De Smet F, McClelland M, Fang FC, De Moor B, Vanderleyden J, Marchal K: Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. J Mol Evol. 2005 Apr;60(4):462-74. doi: 10.1007/s00239-004-0212-7.
Pubmed: 15883881
Duchange N, Zakin MM, Ferrara P, Saint-Girons I, Park I, Tran SV, Py MC, Cohen GN: Structure of the metJBLF cluster in Escherichia coli K12. Sequence of the metB structural gene and of the 5'- and 3'-flanking regions of the metBL operon. J Biol Chem. 1983 Dec 25;258(24):14868-71.
Pubmed: 6361020
Plunkett G 3rd, Burland V, Daniels DL, Blattner FR: Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Nucleic Acids Res. 1993 Jul 25;21(15):3391-8. doi: 10.1093/nar/21.15.3391.
Pubmed: 8346018
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
Zakin MM, Duchange N, Ferrara P, Cohen GN: Nucleotide sequence of the metL gene of Escherichia coli. Its product, the bifunctional aspartokinase ii-homoserine dehydrogenase II, and the bifunctional product of the thrA gene, aspartokinase I-homoserine dehydrogenase I, derive from a common ancestor. J Biol Chem. 1983 Mar 10;258(5):3028-31.
Pubmed: 6298218
Katinka M, Cossart P, Sibilli L, Saint-Girons I, Chalvignac MA, Le Bras G, Cohen GN, Yaniv M: Nucleotide sequence of the thrA gene of Escherichia coli. Proc Natl Acad Sci U S A. 1980 Oct;77(10):5730-3. doi: 10.1073/pnas.77.10.5730.
Pubmed: 7003595
Cossart P, Katinka M, Yaniv M, Saint Girons I, Cohen GN: Construction and expression of a hybrid plasmid containing the Escherichia coli thrA and thrB genes. Mol Gen Genet. 1979 Aug;175(1):39-44. doi: 10.1007/bf00267853.
Pubmed: 390305
Kasahara M, Nakata A, Shinagawa H: Molecular analysis of the Escherichia coli phoP-phoQ operon. J Bacteriol. 1992 Jan;174(2):492-8. doi: 10.1128/jb.174.2.492-498.1992.
Pubmed: 1729240
Groisman EA, Heffron F, Solomon F: Molecular genetic analysis of the Escherichia coli phoP locus. J Bacteriol. 1992 Jan;174(2):486-91. doi: 10.1128/jb.174.2.486-491.1992.
Pubmed: 1530848
Oshima T, Aiba H, Baba T, Fujita K, Hayashi K, Honjo A, Ikemoto K, Inada T, Itoh T, Kajihara M, Kanai K, Kashimoto K, Kimura S, Kitagawa M, Makino K, Masuda S, Miki T, Mizobuchi K, Mori H, Motomura K, Nakamura Y, Nashimoto H, Nishio Y, Saito N, Horiuchi T, et al.: A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Res. 1996 Jun 30;3(3):137-55. doi: 10.1093/dnares/3.3.137.
Pubmed: 8905232
Saint-Girons I, Duchange N, Cohen GN, Zakin MM: Structure and autoregulation of the metJ regulatory gene in Escherichia coli. J Biol Chem. 1984 Nov 25;259(22):14282-5.
Pubmed: 6094549
Collier CD, Johnson JR: The Escherichia coli K-12 metJ193 allele contains a point mutation which alters the hydrophobic pocket responsible for in vitro binding of S-adenosylmethionine: effects on cell growth and induction of met regulon expression. J Bacteriol. 1990 Jul;172(7):3918-24. doi: 10.1128/jb.172.7.3918-3924.1990.
Pubmed: 2141834
Highlighted elements will appear in red.
Highlight Compounds
Highlight Proteins
Enter relative concentration values (without units). Elements will be highlighted in a color gradient where red = lowest concentration and green = highest concentration. For the best results, view the pathway in Black and White.
Visualize Compound Data
Visualize Protein Data
Downloads
Settings