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Pathway Description
Histidine Biosynthesis
Saccharomyces cerevisiae
Category:
Metabolite Pathway
Sub-Category:
Metabolic
Created: 2016-01-18
Last Updated: 2019-08-14
The biosynthesis of histidine begins with the transformation of D-ribose 5-phosphate through an ATP-driven pyrophosphokinase resulting in the release of AMP, hydrogen ion, and phosphoribosyl pyrophosphate. The resulting compound then reacts with an ATP phosphoribosyltransferase resulting in the release of pyrophosphate and 1-(5-phosphoribosyl)-ATP. The latter compound then reacts with a histidine biosynthesis bifunctional protein resulting in the release of hydrogen ion, a pyrophosphate and phosphoribosyl-AMP. The resulting compound is then dehydrated through a histidine biosynthesis trifunctional protein resulting in the release of a phosphoribosylformiminoAICAR-phosphate. This compound then reacts with a 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase resulting in the release of a phosphoribulosylformimino-AICAR-P. This resulting compound then reacts with an L-glutamine through a imidazole glycerol phosphate synthase hisHF resulting in the release of glutamic acid, AICAR, hydrogen ion, and D-erythro-imidazoles glycerol phosphate. The latter compound reacts with a imidazoleglycerol-phosphate dehydratase results in the release of a water molecule and imidazole acetol-phosphate. The resulting compound reacts with L-glutamic acid through a histidinol-phosphate aminotransferase resulting in the release of oxoglutaric acid L-histidinol phosphate. Histidinol phosphate reacts with a water molecule through a histidinol-phosphatase resulting in the release of a phosphate and a histidinol. The resulting compound reacts with an NAD driven histidine biosynthesis trifunctional protein resulting in the release of histidinol. Histidinol reacts with water through a histidine biosynthesis trifunctional protein resulting in the release of L-histidine.
References
Histidine Biosynthesis References
Lee HS, Cho Y, Lee JH, Kang SG: Novel monofunctional histidinol-phosphate phosphatase of the DDDD superfamily of phosphohydrolases. J Bacteriol. 2008 Apr;190(7):2629-32. doi: 10.1128/JB.01722-07. Epub 2008 Jan 25.
Pubmed: 18223080
Omi R, Goto M, Nakagawa N, Miyahara I, Hirotsu K: Expression, purification and preliminary X-ray characterization of histidinol phosphate phosphatase. Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):574-6. doi: 10.1107/S0907444904000277. Epub 2004 Feb 25.
Pubmed: 14993698
Stepansky A, Leustek T: Histidine biosynthesis in plants. Amino Acids. 2006 Mar;30(2):127-42. doi: 10.1007/s00726-005-0247-0. Epub 2006 Mar 20.
Pubmed: 16547652
Blacketer MJ, Madaule P, Myers AM: The Saccharomyces cerevisiae mutation elm4-1 facilitates pseudohyphal differentiation and interacts with a deficiency in phosphoribosylpyrophosphate synthase activity to cause constitutive pseudohyphal growth. Mol Cell Biol. 1994 Jul;14(7):4671-81. doi: 10.1128/mcb.14.7.4671.
Pubmed: 8007970
Carter AT, Narbad A, Pearson BM, Beck KF, Logghe M, Contreras R, Schweizer M: Phosphoribosylpyrophosphate synthetase (PRS): a new gene family in Saccharomyces cerevisiae. Yeast. 1994 Aug;10(8):1031-44. doi: 10.1002/yea.320100805.
Pubmed: 7992503
Wiemann S, Voss H, Schwager C, Rupp T, Stegemann J, Zimmermann J, Grothues D, Sensen C, Erfle H, Hewitt N, et al.: Sequencing and analysis of 51.6 kilobases on the left arm of chromosome XI from Saccharomyces cerevisiae reveals 23 open reading frames including the FAS1 gene. Yeast. 1993 Dec;9(12):1343-8. doi: 10.1002/yea.320091208.
Pubmed: 8154185
Hove-Jensen B: Heterooligomeric phosphoribosyl diphosphate synthase of Saccharomyces cerevisiae: combinatorial expression of the five PRS genes in Escherichia coli. J Biol Chem. 2004 Sep 24;279(39):40345-50. doi: 10.1074/jbc.M405480200. Epub 2004 Jul 26.
Pubmed: 15280369
Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, Araujo R, Aviles E, Berno A, Brennan T, Carpenter J, Chen E, Cherry JM, Chung E, Duncan M, Guzman E, Hartzell G, Hunicke-Smith S, Hyman RW, Kayser A, Komp C, Lashkari D, Lew H, Lin D, Mosedale D, Davis RW, et al.: The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature. 1997 May 29;387(6632 Suppl):78-81.
Pubmed: 9169868
Johnston M, Andrews S, Brinkman R, Cooper J, Ding H, Dover J, Du Z, Favello A, Fulton L, Gattung S, et al.: Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science. 1994 Sep 30;265(5181):2077-82. doi: 10.1126/science.8091229.
Pubmed: 8091229
Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM: The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda). 2014 Mar 20;4(3):389-98. doi: 10.1534/g3.113.008995.
Pubmed: 24374639
Feldmann H, Aigle M, Aljinovic G, Andre B, Baclet MC, Barthe C, Baur A, Becam AM, Biteau N, Boles E, Brandt T, Brendel M, Bruckner M, Bussereau F, Christiansen C, Contreras R, Crouzet M, Cziepluch C, Demolis N, Delaveau T, Doignon F, Domdey H, Dusterhus S, Dubois E, Dujon B, El Bakkoury M, Entian KD, Feurmann M, Fiers W, Fobo GM, Fritz C, Gassenhuber H, Glandsdorff N, Goffeau A, Grivell LA, de Haan M, Hein C, Herbert CJ, Hollenberg CP, Holmstrom K, Jacq C, Jacquet M, Jauniaux JC, Jonniaux JL, Kallesoe T, Kiesau P, Kirchrath L, Kotter P, Korol S, Liebl S, Logghe M, Lohan AJ, Louis EJ, Li ZY, Maat MJ, Mallet L, Mannhaupt G, Messenguy F, Miosga T, Molemans F, Muller S, Nasr F, Obermaier B, Perea J, Pierard A, Piravandi E, Pohl FM, Pohl TM, Potier S, Proft M, Purnelle B, Ramezani Rad M, Rieger M, Rose M, Schaaff-Gerstenschlager I, Scherens B, Schwarzlose C, Skala J, Slonimski PP, Smits PH, Souciet JL, Steensma HY, Stucka R, Urrestarazu A, van der Aart QJ, van Dyck L, Vassarotti A, Vetter I, Vierendeels F, Vissers S, Wagner G, de Wergifosse P, Wolfe KH, Zagulski M, Zimmermann FK, Mewes HW, Kleine K: Complete DNA sequence of yeast chromosome II. EMBO J. 1994 Dec 15;13(24):5795-809.
Pubmed: 7813418
Hernando Y, Parr A, Schweizer M: PRS5, the fifth member of the phosphoribosyl pyrophosphate synthetase gene family in Saccharomyces cerevisiae, is essential for cell viability in the absence of either PRS1 or PRS3. J Bacteriol. 1998 Dec;180(23):6404-7.
Pubmed: 9829955
Mannhaupt G, Vetter I, Schwarzlose C, Mitzel S, Feldmann H: Analysis of a 26 kb region on the left arm of yeast chromosome XV. Yeast. 1996 Jan;12(1):67-76. doi: 10.1002/(SICI)1097-0061(199601)12:1%3C67::AID-YEA884%3E3.0.CO;2-F.
Pubmed: 8789261
Dujon B, Albermann K, Aldea M, Alexandraki D, Ansorge W, Arino J, Benes V, Bohn C, Bolotin-Fukuhara M, Bordonne R, Boyer J, Camasses A, Casamayor A, Casas C, Cheret G, Cziepluch C, Daignan-Fornier B, Dang DV, de Haan M, Delius H, Durand P, Fairhead C, Feldmann H, Gaillon L, Kleine K, et al.: The nucleotide sequence of Saccharomyces cerevisiae chromosome XV. Nature. 1997 May 29;387(6632 Suppl):98-102.
Pubmed: 9169874
Donahue TF, Farabaugh PJ, Fink GR: The nucleotide sequence of the HIS4 region of yeast. Gene. 1982 Apr;18(1):47-59. doi: 10.1016/0378-1119(82)90055-5.
Pubmed: 7049842
Rad MR, Lutzenkirchen K, Xu G, Kleinhans U, Hollenberg CP: The complete sequence of a 11,953 bp fragment from C1G on chromosome III encompasses four new open reading frames. Yeast. 1991 Jul;7(5):533-8. doi: 10.1002/yea.320070513.
Pubmed: 1897318
Oliver SG, van der Aart QJ, Agostoni-Carbone ML, Aigle M, Alberghina L, Alexandraki D, Antoine G, Anwar R, Ballesta JP, Benit P, et al.: The complete DNA sequence of yeast chromosome III. Nature. 1992 May 7;357(6373):38-46. doi: 10.1038/357038a0.
Pubmed: 1574125
Hinnebusch AG, Fink GR: Repeated DNA sequences upstream from HIS1 also occur at several other co-regulated genes in Saccharomyces cerevisiae. J Biol Chem. 1983 Apr 25;258(8):5238-47.
Pubmed: 6300123
Fani R, Tamburini E, Mori E, Lazcano A, Lio P, Barberio C, Casalone E, Cavalieri D, Perito B, Polsinelli M: Paralogous histidine biosynthetic genes: evolutionary analysis of the Saccharomyces cerevisiae HIS6 and HIS7 genes. Gene. 1997 Sep 15;197(1-2):9-17. doi: 10.1016/s0378-1119(97)00146-7.
Pubmed: 9332345
Churcher C, Bowman S, Badcock K, Bankier A, Brown D, Chillingworth T, Connor R, Devlin K, Gentles S, Hamlin N, Harris D, Horsnell T, Hunt S, Jagels K, Jones M, Lye G, Moule S, Odell C, Pearson D, Rajandream M, Rice P, Rowley N, Skelton J, Smith V, Barrell B, et al.: The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Nature. 1997 May 29;387(6632 Suppl):84-7.
Pubmed: 9169870
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