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Pathway Description
Riboflavin Metabolism
Saccharomyces cerevisiae
Category:
Metabolite Pathway
Sub-Category:
Metabolic
Created: 2016-02-03
Last Updated: 2025-01-25
Riboflavin metabolism can happen in two different sets of reactions
a) Guanosine triphosphate reacts with water through a GTP cyclohydrolase resulting in the release of formic acid, pyrophosphate and 2,5-Diamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate. The latter compound then reacts with a NADH dependent 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase resulting in the release of NAD and 2,5-Diamino-6-(1-D-ribitylamino)pyrimidin-4(3H)-one 5'-phosphate. The latter compound reacts through a tRNA pseudouridine synthase 8 / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase resulting in the release of 5-Amino-2,6-dioxy-4-(5'-phospho-D-ribitylamino)pyrimidine.
b)Ribulose 5-phosphate reacts with 3,4-dihydroxy 2-butanone 4-phosphate synthase resulting in the release of formic acid and 1-Deoxy-L-glycero-tetrulose 4-phosphate. The latter compound reacts with a 5-Amino-6-ribitylamino uracil through a 6,7-dimethyl-8-ribityllumazine synthase resulting the release of 6,7-dimethyl-8-(D-ribityl)lumazine. The latter compound reacts with a riboflavin synthase resulting in the release of 5-Amino-6-ribitylamino uracil and Riboflavin. The Riboflavin reacts with an ATP driven riboflavin synthase resulting in the release of ADP and Flavin mononucleotide. The latter compound reacts with an ATP driven FAD synthetase resulting in the release of pyrophosphate and FAD.
References
Riboflavin Metabolism References
http://www.kegg.jp/kegg-bin/show_pathway?org_name=sce&mapno=00740&mapscale=1.0&show_description=show
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Pubmed: 8488729
Baur A, Schaaff-Gerstenschlager I, Boles E, Miosga T, Rose M, Zimmermann FK: Sequence of a 4.8 kb fragment of Saccharomyces cerevisiae chromosome II including three essential open reading frames. Yeast. 1994 Jan;10(1):131. doi: 10.1002/yea.320100113.
Pubmed: 8203148
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Pubmed: 9178509
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Pubmed: 9169874
Jacq C, Alt-Morbe J, Andre B, Arnold W, Bahr A, Ballesta JP, Bargues M, Baron L, Becker A, Biteau N, Blocker H, Blugeon C, Boskovic J, Brandt P, Bruckner M, Buitrago MJ, Coster F, Delaveau T, del Rey F, Dujon B, Eide LG, Garcia-Cantalejo JM, Goffeau A, Gomez-Peris A, Zaccaria P, et al.: The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. Nature. 1997 May 29;387(6632 Suppl):75-8.
Pubmed: 9169867
Hu Y, Rolfs A, Bhullar B, Murthy TV, Zhu C, Berger MF, Camargo AA, Kelley F, McCarron S, Jepson D, Richardson A, Raphael J, Moreira D, Taycher E, Zuo D, Mohr S, Kane MF, Williamson J, Simpson A, Bulyk ML, Harlow E, Marsischky G, Kolodner RD, LaBaer J: Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae. Genome Res. 2007 Apr;17(4):536-43. doi: 10.1101/gr.6037607. Epub 2007 Feb 23.
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Garcia-Ramirez JJ, Santos MA, Revuelta JL: The Saccharomyces cerevisiae RIB4 gene codes for 6,7-dimethyl-8-ribityllumazine synthase involved in riboflavin biosynthesis. Molecular characterization of the gene and purification of the encoded protein. J Biol Chem. 1995 Oct 6;270(40):23801-7. doi: 10.1074/jbc.270.40.23801.
Pubmed: 7559556
Santos MA, Garcia-Ramirez JJ, Revuelta JL: Riboflavin biosynthesis in Saccharomyces cerevisiae. Cloning, characterization, and expression of the RIB5 gene encoding riboflavin synthase. J Biol Chem. 1995 Jan 6;270(1):437-44. doi: 10.1074/jbc.270.1.437.
Pubmed: 7814407
Doignon F, Biteau N, Crouzet M, Aigle M: The complete sequence of a 19,482 bp segment located on the right arm of chromosome II from Saccharomyces cerevisiae. Yeast. 1993 Feb;9(2):189-99. doi: 10.1002/yea.320090210.
Pubmed: 8465606
Wu M, Repetto B, Glerum DM, Tzagoloff A: Cloning and characterization of FAD1, the structural gene for flavin adenine dinucleotide synthetase of Saccharomyces cerevisiae. Mol Cell Biol. 1995 Jan;15(1):264-71. doi: 10.1128/mcb.15.1.264.
Pubmed: 7799934
Saren AM, Laamanen P, Lejarcegui JB, Paulin L: The sequence of a 36.7 kb segment on the left arm of chromosome IV from Saccharomyces cerevisiae reveals 20 non-overlapping open reading frames (ORFs) including SIT4, FAD1, NAM1, RNA11, SIR2, NAT1, PRP9, ACT2 and MPS1 and 11 new ORFs. Yeast. 1997 Jan;13(1):65-71. doi: 10.1002/(SICI)1097-0061(199701)13:1<65::AID-YEA50>3.0.CO;2-T.
Pubmed: 9046088
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