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Pathway Description
D-Arabinose Degradation I
Escherichia coli O157:H7 str. EC4115
Category:
Metabolite Pathway
Sub-Category:
Metabolic
Created: 2024-11-14
Last Updated: 2024-11-14
Wild-Type E.coli K-12 can not directly use D-arabinose as a sole source of carbon and energy; hence, E.coli uses the enzymes of the fucose degradation pathway to degrade D-arabinose for further utilization. D-arabinose can be metabolized to form dihydroxy-acetone phosphate for entering the central metabolism. Glycolaldehyde can be further catalyzed to form glycolic acid by lactaldehyde dehydrogenase.
References
D-Arabinose Degradation I References
Seemann JE, Schulz GE: Structure and mechanism of L-fucose isomerase from Escherichia coli. J Mol Biol. 1997 Oct 17;273(1):256-68. doi: 10.1006/jmbi.1997.1280.
Pubmed: 9367760
Lu Z, Lin EC: The nucleotide sequence of Escherichia coli genes for L-fucose dissimilation. Nucleic Acids Res. 1989 Jun 26;17(12):4883-4. doi: 10.1093/nar/17.12.4883.
Pubmed: 2664711
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
Hayashi K, Morooka N, Yamamoto Y, Fujita K, Isono K, Choi S, Ohtsubo E, Baba T, Wanner BL, Mori H, Horiuchi T: Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol Syst Biol. 2006;2:2006.0007. doi: 10.1038/msb4100049. Epub 2006 Feb 21.
Pubmed: 16738553
Chen YM, Lu Z, Lin EC: Constitutive activation of the fucAO operon and silencing of the divergently transcribed fucPIK operon by an IS5 element in Escherichia coli mutants selected for growth on L-1,2-propanediol. J Bacteriol. 1989 Nov;171(11):6097-105. doi: 10.1128/jb.171.11.6097-6105.1989.
Pubmed: 2553671
Hidalgo E, Chen YM, Lin EC, Aguilar J: Molecular cloning and DNA sequencing of the Escherichia coli K-12 ald gene encoding aldehyde dehydrogenase. J Bacteriol. 1991 Oct;173(19):6118-23. doi: 10.1128/jb.173.19.6118-6123.1991.
Pubmed: 1917845
Aiba H, Baba T, Hayashi K, Inada T, Isono K, Itoh T, Kasai H, Kashimoto K, Kimura S, Kitakawa M, Kitagawa M, Makino K, Miki T, Mizobuchi K, Mori H, Mori T, Motomura K, Nakade S, Nakamura Y, Nashimoto H, Nishio Y, Oshima T, Saito N, Sampei G, Horiuchi T, et al.: A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. DNA Res. 1996 Dec 31;3(6):363-77. doi: 10.1093/dnares/3.6.363.
Pubmed: 9097039
This pathway was propagated using PathWhiz -
Pon, A. et al. Pathways with PathWhiz (2015) Nucleic Acids Res. 43(Web Server issue): W552–W559.
Propagated from SMP0002052
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