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Pathway Description
NADH
Streptomyces coelicolor
Category:
Metabolite Pathway
Sub-Category:
Signaling
Created: 2025-02-25
Last Updated: 2025-05-08
The NADH effector pathway is a redox-sensitive regulatory network controlled by the Rex regulog, which enables bacterial cells to adapt gene expression in response to the cellular NADH/NAD⁺ ratio. Rex is a redox-sensing transcriptional repressor that binds DNA when NAD⁺ levels are high and dissociates upon NADH binding, thus activating transcription under reducing conditions.
A key sensor among Gram-positive bacteria, Rex represses alternative respiratory gene expression until a limited oxygen supply elevates the intracellular NADH:NAD(+) ratio. Rex monitors the intracellular redox state and modulates the expression of genes involved in energy metabolism, respiration, and heme biosynthesis. When the NADH/NAD⁺ ratio increases—indicating a more reduced environment—Rex-mediated repression is lifted, allowing transcription of target genes that help restore redox balance.
Key genes in the Rex regulog include:
rex – Encodes the Rex transcriptional repressor itself, forming part of an autoregulatory feedback loop.
hemA – Encodes glutamyl-tRNA reductase, initiating the heme biosynthesis pathway by producing glutamate-1-semialdehyde.
hemB – Encodes porphobilinogen synthase, which catalyzes the condensation of two molecules of aminolevulinic acid (ALA) to form porphobilinogen.
hemC – Encodes porphobilinogen deaminase, converting porphobilinogen into hydroxymethylbilane.
hemD – Encodes uroporphyrinogen III synthase, forming the first macrocyclic intermediate in the heme biosynthetic pathway.
References
NADH References
McLaughlin KJ, Strain-Damerell CM, Xie K, Brekasis D, Soares AS, Paget MS, Kielkopf CL: Structural basis for NADH/NAD+ redox sensing by a Rex family repressor. Mol Cell. 2010 May 28;38(4):563-75. doi: 10.1016/j.molcel.2010.05.006.
Pubmed: 20513431
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
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