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Pathway Description
Thiamine phosphate
Methanocaldococcus jannaschii
Category:
Metabolite Pathway
Sub-Category:
Metabolic
Created: 2025-02-25
Last Updated: 2025-07-30
ThiR controlls thiamine biosynthesis and transport genes in diverse lineages in the Crenarchaeota phylum as well as in the Halobacteria and Thermococci classes of the Euryarchaeota. ThiR regulators are composed of an N-terminal DNA-binding domain and a C-terminal ligand-binding domain. In addition to thiamine biosynthesis genes, the reconstructed ThiR regulons include various transporters for thiamine and its precursors. The thiamine phosphate effector pathway is part of the broader thiamine (vitamin B1) biosynthetic system and is regulated by the transcriptional regulator ThiR
ThiR is a DNA-binding transcriptional regulator that senses thiamine phosphate levels and controls the expression of genes involved in thiamine precursor biosynthesis and recycling. When thiamine phosphate levels are low, ThiR activates expression of its target genes to restore adequate levels of thiamine derivatives.
Key genes in the ThiR regulog include:
thi4 – Encodes thiazole synthase, a key enzyme that catalyzes the formation of the thiazole moiety of thiamine. Thi4 is essential for de novo thiamine biosynthesis and contains an iron-sulfur cluster involved in sulfur transfer.
thiDN – A fusion gene encoding two enzymatic activities:
ThiD: A hydroxymethylpyrimidine kinase that phosphorylates pyrimidine intermediates in the thiamine biosynthesis pathway.
ThiN: Functions in downstream phosphorylation and conversion of thiamine intermediates, supporting their incorporation into TMP and ultimately TPP.
References
Thiamine phosphate References
Rodionov DA, Leyn SA, Li X, Rodionova IA: A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea. J Bacteriol. 2017 Jan 30;199(4):e00743-16. doi: 10.1128/JB.00743-16. Print 2017 Feb 15.
Pubmed: 27920295
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
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