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Pathway Description
Copper ion, (Cu+) - YcnK
Bacillus subtilis (strain 168)
Category:
Metabolite Pathway
Sub-Category:
Signaling
Created: 2025-03-18
Last Updated: 2025-07-30
The copper ion (Cu⁺) effector pathway regulated by the YcnK regulog is involved in copper acquisition and homeostasis in bacterial cells, particularly under conditions of copper limitation. While copper is an essential micronutrient required for the activity of many enzymes, its uptake must be tightly controlled due to its redox reactivity and potential toxicity.
YcnK is a transcriptional activator of the GntR family that senses intracellular copper status and regulates the expression of genes involved in copper uptake. Under low copper conditions, YcnK activates transcription of its target genes to promote copper acquisition.
Key genes in the YcnK regulog include:
ycnK – Encodes the YcnK transcriptional regulator itself, which controls its own expression and that of downstream genes in response to copper availability.
ycnJ – Encodes a putative copper importer, likely functioning as a membrane protein that facilitates high-affinity uptake of Cu⁺ into the cell under copper-limiting conditions.
ycnI – Encodes a conserved DUF1775 domain-containing protein, possibly involved in copper binding, sensing, or delivery to cuproenzymes, though its exact function remains under investigation.
References
Copper ion, (Cu+) - YcnK References
Chillappagari S, Miethke M, Trip H, Kuipers OP, Marahiel MA: Copper acquisition is mediated by YcnJ and regulated by YcnK and CsoR in Bacillus subtilis. J Bacteriol. 2009 Apr;191(7):2362-70. doi: 10.1128/JB.01616-08. Epub 2009 Jan 23.
Pubmed: 19168619
Hirooka K, Edahiro T, Kimura K, Fujita Y: Direct and indirect regulation of the ycnKJI operon involved in copper uptake through two transcriptional repressors, YcnK and CsoR, in Bacillus subtilis. J Bacteriol. 2012 Oct;194(20):5675-87. doi: 10.1128/JB.00919-12. Epub 2012 Aug 17.
Pubmed: 22904286
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
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