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Pathway Description
Paraquat (Limited Info Operon)
Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Category:
Metabolite Pathway
Sub-Category:
Signaling
Created: 2025-03-25
Last Updated: 2025-04-21
The paraquat effector pathway is part of the bacterial oxidative stress response, specifically activated in the presence of paraquat, a toxic herbicide that generates reactive oxygen species (ROS) through redox cycling. The pathway is regulated by AzrR, a transcriptional repressor that senses oxidative stress induced by paraquat exposure.
AzrR binds to promoter regions of its target genes under normal conditions, repressing transcription. Upon paraquat exposure, the oxidative stress signal likely induces a conformational change in AzrR or alters its DNA-binding capacity, leading to derepression of genes that help detoxify ROS and protect cellular components.
Key genes in the AzrR regulog include:
azr – Encodes a protein likely involved in oxidative stress defense or paraquat resistance, potentially functioning in redox balancing or efflux.
Sden_0935 – Encodes a putative oxidoreductase or redox-active protein, which may reduce toxic paraquat-derived radicals or participate in maintaining intracellular redox homeostasis.
SO3586 – Annotated as a probable stress-response protein or detoxification enzyme, possibly contributing to resistance against paraquat-induced oxidative damage.
References
Paraquat (Limited Info Operon) References
Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS: Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2164-12-S1-S3.
Pubmed: 21810205
Bismuth C, Garnier R, Baud FJ, Muszynski J, Keyes C: Paraquat poisoning. An overview of the current status. Drug Saf. 1990 Jul-Aug;5(4):243-51. doi: 10.2165/00002018-199005040-00002.
Pubmed: 2198050
Cossart P, Gicquel-Sanzey B: Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 1982 Feb 25;10(4):1363-78. doi: 10.1093/nar/10.4.1363.
Pubmed: 6280141
Aiba H, Fujimoto S, Ozaki N: Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res. 1982 Feb 25;10(4):1345-61. doi: 10.1093/nar/10.4.1345.
Pubmed: 6280140
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Pubmed: 9278503
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