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Pathway Description
Chlorophyll biosynthesis
Arabidopsis thaliana
Category:
Metabolite Pathway
Sub-Category:
Metabolic
Created: 2025-12-02
Last Updated: 2026-02-10
Chlorophyll biosynthesis is a chloroplast-localized branch of tetrapyrrole metabolism that converts glutamate into a magnesium-containing chlorin pigment that is then esterified with a phytyl tail and assembled into photosynthetic complexes. Glutamate is first activated as glutamyl‑tRNA and reduced to glutamate‑1‑semialdehyde, which is transaminated to δ‑aminolevulinic acid; subsequent condensation and modification reactions yield porphobilinogen, then uroporphyrinogen III, coproporphyrinogen III, and finally protoporphyrin IX, the shared branchpoint with heme. In Arabidopsis, commitment to chlorophyll occurs when the multi-subunit magnesium chelatase inserts Mg²⁺ into protoporphyrin IX to form Mg‑protoporphyrin IX, which is then methylated and subjected to oxidative cyclization to generate the fifth isocyclic ring, producing protochlorophyllide intermediates. Protochlorophyllide is reduced to chlorophyllide a by the light‑dependent protochlorophyllide oxidoreductase that is highly abundant in etiolated Arabidopsis cotyledons, making chlorophyll formation strongly light‑regulated in seedlings. In parallel, the plastidial MEP pathway supplies the C20 geranylgeranyl diphosphate that is reduced to phytyl diphosphate; chlorophyll synthase then esterifies chlorophyllide a with this tail to form chlorophyll a, which can be further modified to chlorophyll b in the chloroplast. In Arabidopsis, this pathway is tightly regulated at transcriptional and post-translational levels and coordinated with photosystem assembly, as several chlorophyll intermediates are phototoxic and must be produced in step with the availability of apoproteins and the cellular redox and light environment.
References
Chlorophyll biosynthesis References
Reinbothe S, Reinbothe C: The regulation of enzymes involved in chlorophyll biosynthesis. Eur J Biochem. 1996 Apr 15;237(2):323-43. doi: 10.1111/j.1432-1033.1996.00323.x.
Pubmed: 8647070
Larkin RM: Tetrapyrrole Signaling in Plants. Front Plant Sci. 2016 Oct 19;7:1586. doi: 10.3389/fpls.2016.01586. eCollection 2016.
Pubmed: 27807442
Eckhardt U, Grimm B, Hortensteiner S: Recent advances in chlorophyll biosynthesis and breakdown in higher plants. Plant Mol Biol. 2004 Sep;56(1):1-14. doi: 10.1007/s11103-004-2331-3.
Pubmed: 15604725
Gaubier P, Wu HJ, Laudie M, Delseny M, Grellet F: A chlorophyll synthetase gene from Arabidopsis thaliana. Mol Gen Genet. 1995 Nov 1;249(1):58-64. doi: 10.1007/bf00290236.
Pubmed: 8552034
Comella P, Wu HJ, Laudie M, Berger C, Cooke R, Delseny M, Grellet F: Fine sequence analysis of 60 kb around the Arabidopsis thaliana AtEm1 locus on chromosome III. Plant Mol Biol. 1999 Nov;41(5):687-700. doi: 10.1023/a:1006395324818.
Pubmed: 10645728
Cheng CY, Krishnakumar V, Chan AP, Thibaud-Nissen F, Schobel S, Town CD: Araport11: a complete reannotation of the Arabidopsis thaliana reference genome. Plant J. 2017 Feb;89(4):789-804. doi: 10.1111/tpj.13415. Epub 2017 Feb 10.
Pubmed: 27862469
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