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Category Description File | File Size (zipped) Contents Generated On
Data Files PathBank pathways CSV (subjects and descriptions) Download | 2.9 MB 1 file listing all pathways Aug 15 2019
Metabolite names linked to PathBank pathways CSV (includes KEGG and ChEBI IDs) Download | 366 MB 1 file listing all metabolite-pathway links Aug 16 2019
Protein names linked to PathBank pathways CSV (includes UniProt IDs) Download | 55.8 MB 1 file listing all protein-pathway links Aug 16 2019
BioPAX files Download | 752 MB 110234 files Sep 13 2019
SBGN files Download | 422 MB 110234 files Sep 12 2019
SBML files Download | 955 MB 110234 files Sep 13 2019
PWML files Download | 3.44 GB 110234 files Sep 12 2019
RXN files Download | 141 MB 1 file per species Aug 15 2019
SDF files Download | 32.9 MB 1 file combining structures from all species Aug 21 2019
Images
(Primary pathways only
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SVG files Download | 646 MB 2687 files Aug 16 2019
PNG files Download | 4.65 GB 2687 files Aug 17 2019
Sequences
(in FASTA Format)
Protein Sequences Download | 2.28 MB 1 file combining sequences from all species Aug 16 2019
Gene Sequences Download | 701 KB 1 file combining sequences from all species Aug 16 2019
Data Files (Primary Pathways Only) PathBank primary pathways CSV (subjects and descriptions) Download | 723 KB 1 file listing all pathways Aug 16 2019
Metabolite names linked to PathBank primary pathways CSV (includes KEGG and ChEBI IDs) Download | 8.73 MB 1 file listing all metabolite-pathway links Aug 16 2019
Protein names linked to PathBank primary pathways CSV (includes UniProt IDs) Download | 1.77 MB 1 file listing all protein-pathway links Aug 16 2019
BioPAX files for primary pathways Download | 26.5 MB 2687 files Aug 16 2019
SBGN files for primary pathways Download | 21.3 MB 2687 files Aug 16 2019
SBML files for primary pathways Download | 33.4 MB 2687 files Aug 16 2019
PWML files for primary pathways Download | 129 MB 2687 files Aug 16 2019
RXN files for primary pathways Download | 6.38 MB 1 file per species Aug 15 2019
SDF files for primary pathways Download | 2.05 MB 1 file combining structures from all species Aug 16 2019